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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019509 ID=TCONS_00019509|Name=TCONS_00019509|organism=Clytia hemisphaerica|type=transcript|length=359bp
CAGCTACGCCCAGTTACCATCGGTTgtcctgaaaaaaggaaaagagaGAA
CGACAAAGAAACTTCGGTTTTTGTAACCCTGATCTTAATTGAAGCAAGGA
cgaaaaatatacaaatatGTCTTACGTATTttacaaacaacaaacaaatc
TGATGAAACATGTTTTAAGTCATTCGAGTAAAAGGTTAACCCGCCAGAAG
GCTGACAAGCACAACAAAATTAGCACCCGCCATAAGGCTAGCAAGCACTG
AATTACATTTACTCAAATGGATAAAATTTCATCTTAATGGTAAAGGTTTT
TGGGGCATTGGAATGAAAGGTTAATCAATGAGACACAAGCACAACAAAAT
AAGCACCCG Run BLAST on NCBI transcript from alignment at sc0000329:171417..173621+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019509 ID=TCONS_00019509|Name=TCONS_00019509|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at sc0000329:171417..173621+ (Clytia hemisphaerica)
CAGCTACGCCCAGTTACCATCGGTTgtcctgaaaaaaggaaaagagaGAA
CGACAAAGAAACTTCGGTTTTTGTAACCCTGATCTTAATTGAAGCAAGGA
cgaaaaatatacaaatatGTCTTACGTATTttacaaacaacaaacaaatc
TGATGAAACATGTTTTAAGTCATTCGAGTAAAAGGTTAACCCGCCAGAAG
GCTGACAAGCACAACAAAATTAGCACCCGCCATAAGGCTAGCAAGCACCG
AATTACATTTActcaaatggaaaaaaattgatgatgattttATTCNAATT
GAAGCAAGGAcgaaaaatatacaaatatGTCTTACGTATTttacaaacaa
caaacaaatcTGATGAAACATGTTTTAAGTCATTCGAGTAAAAGGTTAAC
CCGCCAGAAGGCTGACAAGCACAACAAAATTAGCACCCGCCATAAGGCTA
GCAAGCACCGAATTACATTTACTCAAATGGAAAAAAGTTGATGATGATTT
TATTTGTATAAATTTTAGGTCATTCGAGTAAAAggttaaggtatgtgttc
accttgcttgacacattctctttaattgatcatatctttagaacaactaa
tttttatatatcaaaaatatatattttctgaaagccaataacattctctt
tctaatggtaaaagtttcagctgaatttaaaaaactgggcaggatataat
taaaatcttaagaattttaaccttacctacttcaaagaagttaaagtcac
ccatagcttttgaattttgaaaaaataatttcgatgctatgttcccaata
gattgaactaaaaaagtgtcttgggatttttttttggattgactttaact
ctttaaatcctaaattctgtaaaaatatcgataaaaaagtaaatttaaat
gtgattttatcagttatctgtaaatcgaggaaaaacaactcggttagaaa
ttagatcctaagacactttttaagtttgatcgtttgggaatctcataaaa
aagaatgaagtcgatatctaaatgctatgggtgactttaacttcgttaaa
agtagtatggtgtggtaaaatttcgtttttttctNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttttgaaattta
aatggttataactctggatctaaaaaagattttaagatcgcgattttacc
aaaatgaaatccagtaacttttcttccactttgactgaaaacattttttt
tgacaaaaaattggaaaaaaggtgtacacataccttaaccCGCCACAAGG
CTGACAAGCACAACAAAATTAGCACCCGCCATAAGGATAGCAAGCACTGA
ATTACATTTACTCAAATGGGGAAAATTTGACGATTTTATTTGTATAAGTT
TTAGGTCATCCGAGTAAAGGTTAACCCACCAGAAGGCTGACAAGCACAAC
AAAATTAGCACCCGTTATAAGGCTAGCAAGCACTGAATTACATTTActca
aatggaaaaaaattgatgattttaTTTGTATAAGTTTTAGGTCATTCAAG
TAAAAGGTTAACCCGCCAGAAGGCTGACAAGCACAAAAAAATTAGCACCC
GCCATAAGGCTAGCAAGCACTGAATTACATTTActcaaatggaaaaaaat
tgatgattttaTTTGTATAAGTTTTAGGTCATTCAAGTAAAAGGTTAACC
CGCCAGAAGGCTGACAAGCACAAAAAAATTAGCACCCGCCATAAGGCTAG
CAAGCACTGAATTACATTTActcaaatggaaaaaaattgatgattttaTT
TGTATAAGTTTTAGGTCATTCAAGTAAAAGGTTAACCCGCCAGAAGGCTG
ACAAACACAATAAAATTAGCACCGGCCATAAGGCTAGCAAGCACTGGATT
ACATTTACTCAAATGGATAAAATTTCATCTTAATGGTAAAGGTTTTTGGG
GCATTGGAATGAAAGGTTAATCAATGAGACACAAGCACAACAAAATAAGC
ACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019509-exon-sc0000329-1491911889:171417..171652 | TCONS_00019509-exon-sc0000329-1491911889:171417..171652 | Clytia hemisphaerica | exon |
| TCONS_00019509-exon-sc0000329-1510915933:171417..171652 | TCONS_00019509-exon-sc0000329-1510915933:171417..171652 | Clytia hemisphaerica | exon |
| TCONS_00019509-exon-sc0000329-1575043694:171417..171652 | TCONS_00019509-exon-sc0000329-1575043694:171417..171652 | Clytia hemisphaerica | exon |
| TCONS_00019509-exon-sc0000329-1491911889:173225..173244 | TCONS_00019509-exon-sc0000329-1491911889:173225..173244 | Clytia hemisphaerica | exon |
| TCONS_00019509-exon-sc0000329-1510915933:173225..173244 | TCONS_00019509-exon-sc0000329-1510915933:173225..173244 | Clytia hemisphaerica | exon |
| TCONS_00019509-exon-sc0000329-1575043694:173225..173244 | TCONS_00019509-exon-sc0000329-1575043694:173225..173244 | Clytia hemisphaerica | exon |
| TCONS_00019509-exon-sc0000329-1491911889:173519..173621 | TCONS_00019509-exon-sc0000329-1491911889:173519..173621 | Clytia hemisphaerica | exon |
| TCONS_00019509-exon-sc0000329-1510915933:173519..173621 | TCONS_00019509-exon-sc0000329-1510915933:173519..173621 | Clytia hemisphaerica | exon |
| TCONS_00019509-exon-sc0000329-1575043694:173519..173621 | TCONS_00019509-exon-sc0000329-1575043694:173519..173621 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000329 | supercontig | sc0000329:171417..173621 + |
Blast
The following BLAST results are available for this feature:
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