TCONS_00019400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019400
Unique NameTCONS_00019400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019400 ID=TCONS_00019400|Name=TCONS_00019400|organism=Clytia hemisphaerica|type=transcript|length=1917bp
CAAAATACAAACATGATCAGAATGCGAATGAAAAGTTATTCCTTGAAAAG
CACTGTCAGAACTTCAATGCTCGGAAAAGATCACCACGTTCTTATCGCTA
CATGGAAGTTTTCGCGGAATGTCAATTATTACATCTTACAGCTTTATCTT
CCTTGCATGCTCATCGTTGTCCTCTCATGGGTCGGTTTCTGGATTGACTA
TCGTTCGGTTCCGGCAAGAACGGCTTTGGGAATTGTAACAGTTCTAAGCA
TGATTACTTTCACGAACACTGTGCATGCAGAATCTCCACCAAATGGCAAA
TCAACTCTGGTTAATTGGTATGTCTTGGTTAGTTTCATCTTTGTCTTTTT
GGGGATTGTTGAATTTGCAATCGTTGGGATCACTGATAAAATTTGGAAAC
AGAGAATTCAGAGAACAATCAAGGAATCATCAAATGTGTCACAGCATCGA
AAAAACAACCACGGTTTGTCGCCACGGAGTCGCCGTCAATCTGCATATTC
TCAAACGCCATGTGAAAGCGATCATGTCGACGATTTGAACGTCATTTTTA
AACGACAATTACAACAGACGGATTCGACAGCTCGTGTAAATGATCTACAA
CCACAAATGAATCGACGGAATCCAAGATCTAACGGTATGTTTTTGGCACC
TACAGGAGTTGCCTTGCAAGAACTAACTAAGGTGCATGAGTATACACAAA
AATGGAAAGCCAAGGCTGGTCTCAAAGAGAAAGTCCATGCTCGACTTTAC
GAGAAACAAAAGTTCGGTAAAGACGATGCACACGTGCTTGACCAATTAGC
AAGAGTTATTTTCCCTGTATGTTTCGTCTTGTTCAATATCATTTATGGCG
TCGCTGTGTATTTTCATCGACAGAAGGATAATTTGGCAAGTGAAGGTTTT
ATTGCTCCAAAGAGACTACAATGGCAAGATCAGAATTAGAATCAAAAGCT
ATATACTATTGTACTTGTTCAATATAATTTATGGCGCCGCTGTATATTTT
CATCGACAAAAGGATAATTTGGCAAGTCAAGGTTTTATCGCTCCAAAGAG
GTTGCAATGGCAAGATCAAACTTTGTTAAATCAGAAACTTCATGATATTA
TGATTGTTCAATATCATTTATGACTTCGCTGTATATTTTCATTGCCAGAA
GGATAATTTGGCAAGCGAAAGTTTTATTGTTTCGAATGGGTTGCAATGGC
AAGATCAAACTTTGTTAAATCAAGTCTCAAAATATTATGCTTGTTCAATA
TCATTTATGGCGTCGCTGTATATTTTCATTACCAGAAGGATAATTTGGCA
AGCGAAGGTTTATTGTTTCGAATGGGTTGCAATGGCAAGATCAGAATTAG
AATCAATAATGTCCTATTCGTGGTAAAGGGACATAATTACATTGTTGTTG
TCAAAAAaatgagatgccttggagtttttacaagataattcactaattgg
tcatttaaagtgatagagatgatgcgttctttagaaaaagtaataagatt
cttttattactacatcttaacgaccaaccaaatcaaataagagcttgtaa
aaactcaagcttgtcaaaaaaaatttctactcTTCAGAAGCAAATGCTCC
TTCACCCGTGTCCACGCTACTGCATCAAAAcattatgttcttatgaaaga
aagtaccttatcgggaaaaatttgtcggggaaaagtgacgaaattttggc
caagtgacaaatattttttcccgacgaaaattttccccggcttTATTGCG
TTTACccactaccagcaagtgacgaatatttttccccgacgaaaattttc
ccgacgaagttttccccgataaggtatagatGATACGGGCAAACGAATCG
TCATTTTATTTACTTGAATTTTTAACCTCGAGAATATTTAGCTTTGGTTT
TCGAGACTGGCAACCCA
Run BLAST on NCBI

transcript from alignment at sc0000326:85398..91755-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019400 ID=TCONS_00019400|Name=TCONS_00019400|organism=Clytia hemisphaerica|type=transcript|length=6358bp|location=Sequence derived from alignment at sc0000326:85398..91755- (Clytia hemisphaerica)
CAAAATACAAACATGATCAGAATGCGAATGAAAAGTTATTCCTTGAAAAG
CACTGTCAGAACTTCAATGCTCGGAAAAGGTAAGTGTCTTCCGGTCCTCA
AAATACAAACATGATCAGAATGCGAATGAAAAGTTATTCCTTGAAAAGCA
CTGTCTGAACTTCAATGCTCGGAAAAGGTAAGTGTCTTCCGATCCTCAAA
ATACAAACATGATCAGAATGAGAATGAAAAGTTATTCCTTGAAAAGCACT
GTCAGAACTTCAATGCTTGGAAAAGGTAAGTGTCTTCTGGTCCCGAAAAT
AGAAACATGATCAGAATGCAGATCGTTGAATAGCACTATCAGAACTTAAT
GCTCCGAAAAGGTAAGAAAGCGACTTCGGATCCTGAAAATACAAACATGA
TTAGAATGACAACGTCCACATAACGTTAGACAATCGTCCTGAGAATATTA
ACATAATCTGAATACTAATTAAAAGTCATTTGCTAAAAAGCATTGTCAGA
GCCACTGGTCTTTATATATCCTTGATCAAGTTTCTCAATTCCGGCCAAGA
AAAATCTTTGTTCGGAGTTTTTTGAAAAGTGGTACCCTAATGGCGGCACT
ACTCAATAGTGGTGTAAATGCATCGATAGCGCTAGACCTACGTCCACTCG
AATACTTTTGATGATATAGCGCCGTTCGACGTTAATTTTTAACACTGCAA
CGGCTCGTGGGTACCAATTCAAAAGCGGATATAGCTTGGTCCAGGGATAT
ATAAAGGTCAGTGGTCAGAGCAAATAATAGCGGTGCTAGAGTTTGGAACA
AAAACTACAGTAACCAGTAGCGTGGTGGGCCGACAAAAGTTCGGGCAAAC
CGGGGAGGCAATTTTTGAACATTATGATTTTGGCGCCTTCTATGAAATCT
AAATATATTTGTAAAGATTACGCGTGCGAAGCGAGCACGAAAATTTTAGG
ATATTTTTTTCTCTTTTAGAATGAAGTGACTTCCATTTCTAGGGTGAAAA
AGGGCACTACCCACCCCCCATGCCACGCTACTGACAGAAACTTATCTCTA
TCTCTGGGTTGTAAACTTTCTTTCCAGATCACCACGTTCTTATCGCTACA
TGGAAGTTTTCGCGGAATGTCAATTATTACATCTTACAGCTTTATCTTCC
TTGCATGCTCATCGTTGTCCTCTCATGGGTCGGTTTCTGGATTGACTATC
GTTCGGTTCCGGCAAGAACGGCTTTGGGAATTGTAACAGTTCTAAGCATG
ATTACTTTCAGTACGTGTTTCCGACATATTTTAATGATTTAAATGATCAA
TTTATCTTTACCGCAAAATTCAATTCAATCATTTTTGTTGAAAAAAAAAG
AACTTTTTTCAATGGACAAATATAGACACCAGGGGGTACTAGGGTAGGAG
AATATTGGTACCGGCAAGAACGACTTTGGGAATTGTAACAAGTTCTAACC
TTTAGTAAGGCTTATATATACCATATTTCAAAATCTAGTCCTAAGAATTC
ACCATCAGAGGATCCCAACCGGCACACAACGTCAAAACAACGTCAAATCA
ACGTCCATAACGTCCATATAACGTTGTGTGAACGTTAAAATAACGTTGTG
TGCCAGCTGGGATTATTTCAATAATTTCTACAGTAATCTAACCGGGTAAC
TGCTTTCAAATAAATTACCAAGCAACAAATTTAGTGATGCCAAAAATTGC
CGATGTAGAACGATAAACTCGTTATACATTCATTCACGATCTGGATAACG
CTATCAATAAGTCTCAATAACTTTCTGCATATTGGAAGTGAAGGCTTCGA
TCTCAGACTTGCATTTAACTGCAATTAACTGTGTTTGAACCCCAGAAACT
TCCAGGTAGGGTATCAAGGATGCATCTATTTTCACTAATGATATCTTGAA
ATACTTTGTTTTCACATATATCTTTGTAACTTTTTTAACCGTTTCTCATT
TTAGCGAACACTGTGCATGCAGAATCTCCACCAAATGGCAAATCAACTCT
GGTTAATTGGTATGTCTTGGTTAGTTTCATCTTTGTCTTTTTGGGGATTG
TTGAATTTGCAATCGTTGGGATCACTGATAAAATTTGGAAACAGAGAATT
CAGGTGAGACCAATTGATAATATAAAGAATTATCTTTCTTCAAAACCTTA
ACATTTTTTAACCGTGTGCTCAGACATATTTGATAAATGAAAATACATTA
ACCCTTTAAGTGTCAATGTGGTATATATCAGACATGGGCTATGTAGGAGG
GCGAACTCCTTCTAGATCCGGAGATAAAAGCATTTAAAGTTTGAACTAGC
GATTTTCTTTAAAAAAACTTAGAAAAAATGACCGTTGCACTTAAAGGGTT
AAGCAAAACAAAATATTAAGGCATAAAGAAACGTAGGACGATCACGACAA
GATGTAAACATGGCCTGGAATCAGGTGTAACAGAGAACAAACTATAAATA
AGAACATAAGGCTTTGATGTCAAAATATTAAGATCAGGTTAAGAACATTT
TAAGTCTTTGCGGACTCGAAAACGCCCGATTTCATCATCTTTAGAACATT
TTTAGACTTAAAACTTAAAAAAGATTAAGAACATCCGAAATCTTCAAACA
TTTTGGATGTTCTTATAAAAAAAACGTGTAAATACTGAAAATACTTTTGA
CAGACAAACAAAAGAACAAAGAAAAAAAAACAGGACGATCACGACAAGAT
GAAGATAGAGTCTAGAATCACGGGCACAGTTTAATACAGACCTGTTTTTA
GTGGGTGGAATATCATTAATTGGTTCTTCCTAGCTTATCCCCCGTGTCTA
ACGTTACCGATGAATTATAAATTTATATCATCTGGTTCCAGAAATAAAAA
AAAACCAGCTGCTACAAATGGCTGTGCATCTAAGATTGAGGTTTTGTGCC
AGTTTGGATCAAAATGATAGTGCTATGTTAAAGAAATCCTTTCCATGATG
TACACCNCTCTTCCTAGCTTATCCCCCTTGTCTAACGTTACCGATGAATT
CTAAATTTATATCATATGGTGCCAGAAATAAAAAAAAACCAGCTGGTACA
AGTGGCTGTGTATCTAAGATTGAGGTTTTGTGCCAGTTTGGATCAAAATG
ATAGTGCTATGTTAAAGAAATCCTTTCCATGATGTACACCCCTGTCTCAC
TGACCCGGTGGGAATGAAATTGAAGGAGTATTCTGCAGTGGGGGTAGCAA
ATCCCTTCTATTTTATGACTGGGGATTTTGATTTCTATTGTTTTCAATAC
AAAAATTCCAGTGAAGACGGCAAATTTACATTAAAATTTTACAGTGGGGA
TATTGATACTTCAATCTTTCCGATGGGGACGAAATTTGAGGGATTTAACT
CCTTTGGGGACAAATTTTGGGCTTATATTTCCAGTGGGGCGGAGGTCCCA
CCCGGTCTGTGACACAGCGGTGTTGATGTAGAAAAGAAGCGAACCTCTTA
TGTTGTCAAAATATATAGAGTGTCGTTTATCAGTTCCTTGTTGACGTTAA
CTTTCAATATTATCTAATAATGGAGCGTGTTGAACAGCAGAATGTCAATT
AAGAACGCTAACATTAAGAAAAACACTCAAAGCAACATCAAGTTTCAAAA
TAATTTTTATTTCTTCTTTAACCAGAGAACAATCAAGGAATCATCAAATG
TGTCACAGCATCGAAAAAACAACCACGGTTTGTCGCCACGGAGTCGCCGT
CAATCTGCATATTCTCAAACGCCATGTGAAAGCGATCATGTCGACGATTT
GAACGTCATTTTTAAACGACAATTACAACAGACGGATTCGACAGCTCGTG
TAAATGATCTACAACCACAAATGAATCGACGGAATCCAAGATCTAACGGT
ATGTTTTTGGCACCTACAGGAGTTGCCTTGCAAGAACTAACTAAGGTACA
TTTTTACATCTTTTTGTTTTTAATACATTCTGCAATGTGCTTTTCCAGAA
GAAAAAACTTACCAAATACTGTTGAGGATATTGATTTTTCAAAGTATCAA
ACCCCCTGGATATCCTCTCTTATAAAGATGCTTAAGTACCCCTGGATATC
GTATTTTTTACTTGAATAGACACTTTACGGACTATTTTCGGAAAAGCCCA
ATATCAGAAAGATAGGGTTTAAGAGGAATTTCAAAAATCCATTTTCACGA
GTACATGATTTTCACGGTTCACGCTTTTGGAAGGAAATAATTCGAGTATG
TGCGAACTCGATCTGCGAAAATTGAACCCTTAAGAGAGACTTAGAATTTT
GTGAAAGTGTTACCCTAGCAGAGACAAAAGAGGAGAGGAAAGCTAACCCT
GACCCTTAGAAAAACTATTTTAACTTGTGATATGGAAAGAGACGTGTCTT
ATGCCTTATGCTCACAAAACAAGCAAGTACATGAAATTCTAAAAATCTGT
ACTTGAACTACGCAGATTTTTACACAGAAGGTCTTGAGAAAAAGGTGGTG
TCAATTTCTCTCTGTGATTTGAATTTTTCCTAATTTGAAGAAATTTCTTG
AAGATTGAATTAGAGAGACAATTGTATTTAACCCTATTCGTACTCGGCCT
AGGGGGGCTGTTTCTGTTCGGAGGTCAAATTATTGGTAATAGCTCCTGAA
ATAATAGAGCTTTCGTCATGAAATTTTCTGTAAATTCCTAACTATTATTT
TTAGTTTCAAAATAAATAAAAATTTGACACCTAAATATTTTCACACCTTG
TGCATGATGACATTTCCGACAGGAAAATTGACACTTTTCCAATACAAATT
TATTTTTAATGTCATATATCGATTAAACCGTAATTTATTGAATATCTAAG
ATGAAATAAGCATTTTAAACTCGGGCAACTTTTTTCTAGAAAGCCTTTGT
TAGAAGACAATAGCTATTTATAAGAACAAAGGAAATTTTCGGTTTTTGCT
CACTTTTGGCATGATGAGTGACGTCATCAAAAAAATTTTTTGTCAAACCT
TATGTGACAAGGATCTTGTGTGCCAAATTTCATCAAAAAAGACCCACTAG
ATCAAAAGTTAAGGGGTGAAACAGGAAAAGCCCCCCCCCCCCCCGTTCTG
AACCACCCATAAAAGTCTAGGTTGAATAGGGTATACTAGGTTAAGAAATG
TGTTTTTCTTATTTTCTCAAAGGTGCATGAGTATACACAAAAATGGAAAG
CCAAGGCTGGTCTCAAAGAGAAAGTCCATGCTCGACTTTACGAGAAACAA
AAGTTCGGTAAAGACGATGCACACGTGCTTGACCAATTAGCAAGAGTTAT
TTTCCCTGTATGTTTCGTCTTGTTCAATATCATTTATGGCGTCGCTGTGT
ATTTTCATCGACAGAAGGATAATTTGGCAAGTGAAGGTTTTATTGCTCCA
AAGAGACTACAATGGCAAGATCAGAATTAGAATCAAAAGCTATATACTAT
TGTACTTGTTCAATATAATTTATGGCGCCGCTGTATATTTTCATCGACAA
AAGGATAATTTGGCAAGTCAAGGTTTTATCGCTCCAAAGAGGTTGCAATG
GCAAGATCAAACTTTGTTAAATCAGAAACTTCATGATATTATGATTGTTC
AATATCATTTATGACTTCGCTGTATATTTTCATTGCCAGAAGGATAATTT
GGCAAGCGAAAGTTTTATTGTTTCGAATGGGTTGCAATGGCAAGATCAAA
CTTTGTTAAATCAAGTCTCAAAATATTATGCTTGTTCAATATCATTTATG
GCGTCGCTGTATATTTTCATTACCAGAAGGATAATTTGGCAAGCGAAGGT
TTATTGTTTCGAATGGGTTGCAATGGCAAGATCAGAATTAGAATCAATAA
TGTCCTATTCGTGGTAAAGGGACATAATTACATTGTTGTTGTCAAAAAAA
TGAGATGCCTTGGAGTTTTTACAAGATAATTCACTAATTGGTCATTTAAA
GTGATAGAGATGATGCGTTCTTTAGAAAAAGTAATAAGATTCTTTTATTA
CTACATCTTAACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCAAG
CTTGTCAAAAAAAATTTCTACTCTTCAGAAGCAAATGCTCCTTCACCCGT
GTCCACGCTACTGCATCAAAACATTATGTTCTTATGAAAGAAAGTACCTT
ATCGGGAAAAATTTGTCGGGGAAAAGTGACGAAATTTTGGCCAAGTGACA
AATATTTTTTCCCGACGAAAATTTTCCCCGGCTTTATTGCGTTTACCCAC
TACCAGCAAGTGACGAATATTTTTCCCCGACGAAAATTTTCCCGACGAAG
TTTTCCCCGATAAGGTATAGATGATACGGGCAAACGAATCGTCATTTTAT
TTACTTGAATTTTTAACCTCGAGAATATTTAGCTTTGGTTTTCGAGACTG
GCAACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010901XLOC_010901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019400-exon-sc0000326-1575043694:91677..91755TCONS_00019400-exon-sc0000326-1575043694:91677..91755Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1575043694:90496..90678TCONS_00019400-exon-sc0000326-1575043694:90496..90678Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1575043694:89653..89801TCONS_00019400-exon-sc0000326-1575043694:89653..89801Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1575043694:87861..88130TCONS_00019400-exon-sc0000326-1575043694:87861..88130Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1575043694:85398..86633TCONS_00019400-exon-sc0000326-1575043694:85398..86633Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1510915933:91677..91755TCONS_00019400-exon-sc0000326-1510915933:91677..91755Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1510915933:90496..90678TCONS_00019400-exon-sc0000326-1510915933:90496..90678Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1510915933:89653..89801TCONS_00019400-exon-sc0000326-1510915933:89653..89801Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1510915933:87861..88130TCONS_00019400-exon-sc0000326-1510915933:87861..88130Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1510915933:85398..86633TCONS_00019400-exon-sc0000326-1510915933:85398..86633Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1491911889:91677..91755TCONS_00019400-exon-sc0000326-1491911889:91677..91755Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1491911889:90496..90678TCONS_00019400-exon-sc0000326-1491911889:90496..90678Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1491911889:89653..89801TCONS_00019400-exon-sc0000326-1491911889:89653..89801Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1491911889:87861..88130TCONS_00019400-exon-sc0000326-1491911889:87861..88130Clytia hemisphaericaexon
TCONS_00019400-exon-sc0000326-1491911889:85398..86633TCONS_00019400-exon-sc0000326-1491911889:85398..86633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:85398..91755 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0130447	0.0984669	0	0	0	0	0	0	0	0	0.0644779	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00019400 vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 7.223e-25
Identity = 77/244 (31.56%), Postives = 110/244 (45.08%), Query Frame = 1 
Query:  115 RNVNYYILQLYLPCMLIVVLSWVGFWIDYRSVPARTALGIVTVLSMITFTNTVHAESPPNGKSTLVNWYVLVSFIFVFLGIVEFAIVGITDKIWKQRIQRTIKESSNVSQHRKNNHGLSPRSRRQSAYSQTPCESDHVDDLNVIFKRQLQQTDSTARVNDLQPQMNRRNPRSNGMFLAPTGVALQELTKVHEYTQKWKAKAGLKEKVHARLYEKQKFGKDDAHVLDQLARVIFPVCFVLFNIIY 846
            R++ +++LQ Y P  L+V+LSWV FWID R+VPAR  LGI TVL+M T    V+A  P       V+ Y+ VSF+FVFL ++E+A V     +                Q RK           Q    + PC S     L       L    S   VNDL   M     + + M +        +LT   E +   + K+     V  R+         D H +D+ +R+IFP  ++LFN+IY
Sbjct:  279 RHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTV----------------QERKE----------QKLREKLPCTS----GLPPPRTAMLDGNYSDGEVNDLDNYMPENGEKPDRMMV--------QLTLASERSSP-QRKSQRSSYVSMRI---------DTHAIDKYSRIIFPAAYILFNLIY 474
The following BLAST results are available for this feature:
BLAST of TCONS_00019400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBRR17.223e-2531.56Gamma-aminobutyric acid receptor subunit rho-1 OS=... [more]
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