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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019383 ID=TCONS_00019383|Name=TCONS_00019383|organism=Clytia hemisphaerica|type=transcript|length=2308bpRun BLAST on NCBI protein sequence of TCONS_00019383-protein >TCONS_00019383-protein ID=TCONS_00019383-protein|Name=TCONS_00019383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp MAGESEEKLNQKDEEQKIELTTMTIKNEVIDDVSPTGYPRPESASPSGYPRun BLAST on NCBI transcript from alignment at sc0000326:251081..269260+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019383 ID=TCONS_00019383|Name=TCONS_00019383|organism=Clytia hemisphaerica|type=transcript|length=18180bp|location=Sequence derived from alignment at sc0000326:251081..269260+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000326:251081..269260+ >TCONS_00019383 ID=TCONS_00019383|Name=TCONS_00019383|organism=Clytia hemisphaerica|type=CDS|length=13152bp|location=Sequence derived from alignment at sc0000326:251081..269260+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019383 vs. Swiss-Prot (Human)
Match: ARI3A (AT-rich interactive domain-containing protein 3A OS=Homo sapiens GN=ARID3A PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 2.111e-25 Identity = 45/107 (42.06%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 982 WLYEENIKKLYNLDKNPQRQIFLDEFFSYRRTHGLYC-KIPVIARKPLDVFLLYSIVQKYGGFEQTMKNRMWSQIARELELPRTMTSGAFTLKLKYIRLLYQFECYK 1299
W YEE K+LY LD +P+R+ FLD+ FS+ + G +IP++A++ LD+F+LY +V + GG + + ++W +I + L LP ++TS AFTL+ +Y++ LY +EC K
Sbjct: 223 WTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 329 The following BLAST results are available for this feature:
BLAST of TCONS_00019383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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