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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019363 ID=TCONS_00019363|Name=TCONS_00019363|organism=Clytia hemisphaerica|type=transcript|length=2012bp
TGAGTGATGGGCAAGTAAATTCGGAAACTCTCAACAAGCCAAAAAAGGCT
GTAAGGCAAGCAGACAGGAGCATGTATTTATCGTGTGCAGGGTGACCACT
GCACAGTAAAAAGTTGGAAATGGTTCGCAGGTGGGACATGGTGATAGGTT
TTCTTTGTTTGCGGGTTAGGGAGTTGCCTTGGCGACGTCGGATGCCTCGG
ACGAGTTTGTGAAGGACGGGCATAAGGGGTAGGGATGCATTGGAACCCAG
CATGGTGTTTTGGTGTAGTACTCTAGTAATGTAGACTTTAATGATTTTGC
AAGCTATACCACGATTAAAAGAGAAGACAGCAAAAAAACACAACGAAGAC
TCTGAAACAGGAAATGGGGTCAAACCAGATGTCTCGCAAAAATTGAGGTA
GGAGTGGGTGCCACACATATAGGTGGATTGGGTGGAAGGGGCCAACGAGT
CGTTTAAGAGCCCAAAAAGATCTTTGCCAAGAGATCCATTGAAGAGACTG
GTGGAATTGATGGGTACGGACAAGATTCGGGACACGCTAATTTGAATGCG
TCGACCTGTAAACGGGACAAGAGATCAGCAAAAACATTATCAGAGCCCAG
GATGTGACGGAAGGAAAGGAGGATATTCTTCTTAGCAGTAATAAAAAAGA
TCTCCCTAATAATTGCCATCATTTGCTTGTCTTTTGAAGAAGAAGACGAC
CAGACCGAAACTGTAGCCTCGTTGTCAGAAAACACAACAATCCTACAATC
CCTAAAAAACTCAACCCATGTTGTTAAAGATACAAAAGCAGCGAAGATCT
CAAGGAAGGATATGTGGGTAAGATTGGAAACATCGAAAGGCCAGGCGTGG
GAAATCCATAAACCCTGGAAAAAGCAGCCAAAACCCAAAAAGGAAGCATC
CGTAAAAATCTCAAAAGGCTTCTTAAGGGAGATGGGGGTAGGGATAAAAA
AAGACCCATTCCAGGAATCGAGGAATTCTGCCCACGTGTCCAGATCAAGA
CGGACATCACAGGAAACGTCAATATGGTGATTGAGACGAGCCACAGAAGT
AGATAGATCGATTAGGCGACGCAGAAAGATACGACCTGGACGAATCACTT
TGCAGGCAAACGACAAAGACCCAATTAAAGAAAGAAGCTCGCGTTTTGTA
CATTTCTTCTTTGAGCGCCAAGAGGATACCATTGTTTTAAGCGCAGACAA
CTTATCATCAGGAAGAGGAATAAGAGAAGATACAGTGTCAATTTCAATAC
CAAGATAAGACATAACCTGACTTGGGCCTTCCAATTTGTCCAAAGCGATG
GGAACACCAACGTTCTTGAAGAGAGCCTGTGTAACATTCATCTTATGCTG
AGTTTCGACAGAAGTAACCGCACACAGAATGAAGTCGTCAAGATAGTGAG
AGAGAGCAGATAGAAGACATTTATGTACAAGAATCCACTGCAGAGCATCA
GCAAACATGTTGAAAATACAGTGGGAGGATCGGCTGCCAAAAGGGAGACA
AAGATCAAAACAATACCTACCTTGCCAATGGTAACCTAGAAGGGGCCAGT
CATCAGGATGAACAGGGCATAGGCGAAAGGCATGCTTAATGTCGATTTTC
CCCATAAAACAACCTGGGCCCACTAGGCGGATCATGTTGAGGGCTTCATC
AAAGGATGTGTATTCCAGATGAGTTAGATCGATAGGGATTCCATCATTAA
CAGAAGAGCCAGGGGGAAGGATAAGTCCAGGATGACACGTTGGGTTCCAT
CTTTCTTTAAGGCAGCACCAAGGGGGGGGGACAGAAGAAGGAAGGTAGAG
GGTGAGAGTCGAAGGGGCCTGCGGTATGTCCCCGCTTCAATTCTTTCAAG
ATGGTTGTAGACACAGCCTCACCGTTAGAATCGGCCAAAAGGTTGTTGCG
TTCAGGTCCTGAGGGAGGGGGCCCTTGAAATCCAATGTGGAATCCATAAA
AAAACCCTAACACTAAAAAATCCCTTATTTCAGGGTCATACCCAGAGAGC
AATTCATGGAGC Run BLAST on NCBI protein sequence of TCONS_00019363-protein >TCONS_00019363-protein ID=TCONS_00019363-protein|Name=TCONS_00019363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
MIRLVGPGCFMGKIDIKHAFRLCPVHPDDWPLLGYHWQGRYCFDLCLPFG
SRSSHCIFNMFADALQWILVHKCLLSALSHYLDDFILCAVTSVETQHKMN
VTQALFKNVGVPIALDKLEGPSQVMSYLGIEIDTVSSLIPLPDDKLSALK
TMVSSWRSKKKCTKRELLSLIGSLSFACKVIRPGRIFLRRLIDLSTSVAR
LNHHIDVSCDVRLDLDTWAEFLDSWNGSFFIPTPISLKKPFEIFTDASFL
GFGCFFQGLWISHAWPFDVSNLTHISFLEIFAAFVSLTTWVEFFRDCRIV
VFSDNEATVSVWSSSSSKDKQMMAIIREIFFITAKKNILLSFRHILGSDN
VFADLLSRLQVDAFKLACPESCPYPSIPPVSSMDLLAKIFLGS Run BLAST on NCBI transcript from alignment at sc0000325:339624..341635 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019363 ID=TCONS_00019363|Name=TCONS_00019363|organism=Clytia hemisphaerica|type=transcript|length=2012bp|location=Sequence derived from alignment at sc0000325:339624..341635 (Clytia hemisphaerica)
GCTCCATGAATTGCTCTCTGGGTATGACCCTGAAATAAGGGATTTTTTAG
TGTTAGGGTTTTTTTATGGATTCCACATTGGATTTCAAGGGCCCCCTCCC
TCAGGACCTGAACGCAACAACCTTTTGGCCGATTCTAACGGTGAGGCTGT
GTCTACAACCATCTTGAAAGAATTGAAGCGGGGACATACCGCAGGCCCCT
TCGACTCTCACCCTCTACCTTCCTTCTTCTGTCCCCCCCCCTTGGTGCTG
CCTTAAAGAAAGATGGAACCCAACGTGTCATCCTGGACTTATCCTTCCCC
CTGGCTCTTCTGTTAATGATGGAATCCCTATCGATCTAACTCATCTGGAA
TACACATCCTTTGATGAAGCCCTCAACATGATCCGCCTAGTGGGCCCAGG
TTGTTTTATGGGGAAAATCGACATTAAGCATGCCTTTCGCCTATGCCCTG
TTCATCCTGATGACTGGCCCCTTCTAGGTTACCATTGGCAAGGTAGGTAT
TGTTTTGATCTTTGTCTCCCTTTTGGCAGCCGATCCTCCCACTGTATTTT
CAACATGTTTGCTGATGCTCTGCAGTGGATTCTTGTACATAAATGTCTTC
TATCTGCTCTCTCTCACTATCTTGACGACTTCATTCTGTGTGCGGTTACT
TCTGTCGAAACTCAGCATAAGATGAATGTTACACAGGCTCTCTTCAAGAA
CGTTGGTGTTCCCATCGCTTTGGACAAATTGGAAGGCCCAAGTCAGGTTA
TGTCTTATCTTGGTATTGAAATTGACACTGTATCTTCTCTTATTCCTCTT
CCTGATGATAAGTTGTCTGCGCTTAAAACAATGGTATCCTCTTGGCGCTC
AAAGAAGAAATGTACAAAACGCGAGCTTCTTTCTTTAATTGGGTCTTTGT
CGTTTGCCTGCAAAGTGATTCGTCCAGGTCGTATCTTTCTGCGTCGCCTA
ATCGATCTATCTACTTCTGTGGCTCGTCTCAATCACCATATTGACGTTTC
CTGTGATGTCCGTCTTGATCTGGACACGTGGGCAGAATTCCTCGATTCCT
GGAATGGGTCTTTTTTTATCCCTACCCCCATCTCCCTTAAGAAGCCTTTT
GAGATTTTTACGGATGCTTCCTTTTTGGGTTTTGGCTGCTTTTTCCAGGG
TTTATGGATTTCCCACGCCTGGCCTTTCGATGTTTCCAATCTTACCCACA
TATCCTTCCTTGAGATCTTCGCTGCTTTTGTATCTTTAACAACATGGGTT
GAGTTTTTTAGGGATTGTAGGATTGTTGTGTTTTCTGACAACGAGGCTAC
AGTTTCGGTCTGGTCGTCTTCTTCTTCAAAAGACAAGCAAATGATGGCAA
TTATTAGGGAGATCTTTTTTATTACTGCTAAGAAGAATATCCTCCTTTCC
TTCCGTCACATCCTGGGCTCTGATAATGTTTTTGCTGATCTCTTGTCCCG
TTTACAGGTCGACGCATTCAAATTAGCGTGTCCCGAATCTTGTCCGTACC
CATCAATTCCACCAGTCTCTTCAATGGATCTCTTGGCAAAGATCTTTTTG
GGCTCTTAAACGACTCGTTGGCCCCTTCCACCCAATCCACCTATATGTGT
GGCACCCACTCCTACCTCAATTTTTGCGAGACATCTGGTTTGACCCCATT
TCCTGTTTCAGAGTCTTCGTTGTGTTTTTTTGCTGTCTTCTCTTTTAATC
GTGGTATAGCTTGCAAAATCATTAAAGTCTACATTACTAGAGTACTACAC
CAAAACACCATGCTGGGTTCCAATGCATCCCTACCCCTTATGCCCGTCCT
TCACAAACTCGTCCGAGGCATCCGACGTCGCCAAGGCAACTCCCTAACCC
GCAAACAAAGAAAACCTATCACCATGTCCCACCTGCGAACCATTTCCAAC
TTTTTACTGTGCAGTGGTCACCCTGCACACGATAAATACATGCTCCTGTC
TGCTTGCCTTACAGCCTTTTTTGGCTTGTTGAGAGTTTCCGAATTTACTT
GCCCATCACTCA Coding sequence (CDS) from alignment at sc0000325:339624..341635 >TCONS_00019363 ID=TCONS_00019363|Name=TCONS_00019363|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000325:339624..341635 (Clytia hemisphaerica)
ATGATCCGCCTAGTGGGCCCAGGTTGTTTTATGGGGAAAATCGACATTAA
GCATGCCTTTCGCCTATGCCCTGTTCATCCTGATGACTGGCCCCTTCTAG
GTTACCATTGGCAAGGTAGGTATTGTTTTGATCTTTGTCTCCCTTTTGGC
AGCCGATCCTCCCACTGTATTTTCAACATGTTTGCTGATGCTCTGCAGTG
GATTCTTGTACATAAATGTCTTCTATCTGCTCTCTCTCACTATCTTGACG
ACTTCATTCTGTGTGCGGTTACTTCTGTCGAAACTCAGCATAAGATGAAT
GTTACACAGGCTCTCTTCAAGAACGTTGGTGTTCCCATCGCTTTGGACAA
ATTGGAAGGCCCAAGTCAGGTTATGTCTTATCTTGGTATTGAAATTGACA
CTGTATCTTCTCTTATTCCTCTTCCTGATGATAAGTTGTCTGCGCTTAAA
ACAATGGTATCCTCTTGGCGCTCAAAGAAGAAATGTACAAAACGCGAGCT
TCTTTCTTTAATTGGGTCTTTGTCGTTTGCCTGCAAAGTGATTCGTCCAG
GTCGTATCTTTCTGCGTCGCCTAATCGATCTATCTACTTCTGTGGCTCGT
CTCAATCACCATATTGACGTTTCCTGTGATGTCCGTCTTGATCTGGACAC
GTGGGCAGAATTCCTCGATTCCTGGAATGGGTCTTTTTTTATCCCTACCC
CCATCTCCCTTAAGAAGCCTTTTGAGATTTTTACGGATGCTTCCTTTTTG
GGTTTTGGCTGCTTTTTCCAGGGTTTATGGATTTCCCACGCCTGGCCTTT
CGATGTTTCCAATCTTACCCACATATCCTTCCTTGAGATCTTCGCTGCTT
TTGTATCTTTAACAACATGGGTTGAGTTTTTTAGGGATTGTAGGATTGTT
GTGTTTTCTGACAACGAGGCTACAGTTTCGGTCTGGTCGTCTTCTTCTTC
AAAAGACAAGCAAATGATGGCAATTATTAGGGAGATCTTTTTTATTACTG
CTAAGAAGAATATCCTCCTTTCCTTCCGTCACATCCTGGGCTCTGATAAT
GTTTTTGCTGATCTCTTGTCCCGTTTACAGGTCGACGCATTCAAATTAGC
GTGTCCCGAATCTTGTCCGTACCCATCAATTCCACCAGTCTCTTCAATGG
ATCTCTTGGCAAAGATCTTTTTGGGCTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019363-exon-sc0000325-1491911889:339624..341635 | TCONS_00019363-exon-sc0000325-1491911889:339624..341635 | Clytia hemisphaerica | exon |
| TCONS_00019363-exon-sc0000325-1510915933:339624..341635 | TCONS_00019363-exon-sc0000325-1510915933:339624..341635 | Clytia hemisphaerica | exon |
| TCONS_00019363-exon-sc0000325-1575043694:339624..341635 | TCONS_00019363-exon-sc0000325-1575043694:339624..341635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:339624..341635 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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