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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019356 ID=TCONS_00019356|Name=TCONS_00019356|organism=Clytia hemisphaerica|type=transcript|length=1417bp
ATTACAAACTTGGGACACGTTTTCTCTTGTACAATCATTCGTAGTAGCTT
TAATGtttatatttcatatatatttAGATaccaaaaacaagaaaatggcT
GTGCAAATGACTCATGGTGTTATCTTTTTACTAGCAATCTTTACCATACT
CAATATTTATATGGTCATGCAACGATACAACAACAATCATCAAAACGAAA
ACAACTTAGAATCGACAAAACGTTCCATAATCAAAGACTCCACAGATTTG
CAACAAAACATTTTACAAATAAACGACATACAAAAGCGCCTTCAGCGCTT
AGAAACCAAATCTGATTTTGACAGATCTCTCAAGGAGATTAACAACAAAA
CAGAGACTTTAATAGAGCGTCTAGTGAAAACTATTTGGCGCCCGacgaat
gaaaacaaaaacacaacTTATGGAACACATCGAAATCTTAACATAGATGA
TGGTGATTTAGAATGGCTAGACAGAGATGGCGCCAAAGATCTTGCCAATT
ATGGTGACGGGTCTTGTCCAATCAACCGGAACCGGGAAGCATGGCAGAAA
ATGTTACGGTATTGGATTACACTAGCTAAAAAATACAACATCCGTTATTT
CCTAACTGCTGGGTCACTGCTAGGAGCATGGCGCGACGAGGAGGTTATTC
CTTATGACCAGGACATGGATATTCGGATTCATATTGATGATTTTGATAAA
TTCTATCCATTACGTCAACGTAAATTCGTTTGGGAATCCTACGATGATTG
GGACATGCATTTTTATTTTGTCAGAGATTGGCGACTCCCGTACGACCTTC
GTCGTCGGTATTCGTGTAAAGGAAAACTCGTTCCCGACTATGAAGGACAA
TGCTCGTTTGTTGATCCTAATGCTCGGTTAATATACAGGAATTGGCATTT
GGATTTATACGCTTACACTACTTATACAGATGTCGTAAAGTTTATACCCC
ATTCTGCTGATTGGGAATATCGGAAAGATGAAATCTTTCCTTTAACCAGA
TGTAATTTTATGGGAATTGAAACTCGATGTCCACAAAAACCAGTTGCAAT
ATTTAAAAACCTTTATAATGCACCTTTTAAACCATCTAAGATATGTGCTA
ATAAAACTTTTGTTAAAGTGTGATTTTAAAGGATATTCTAGCATTTAGAT
TTTTGATAAATTCTTTAATATGACCTTTATTTAATTTAGTAGATATTTGA
GTTTTAGGGAaacaacttttgaaatttgaaaaactttttttgacgtTTAT
GTTTAGAGATCGATGTCTTTCATTGAATCTTTTCTACTTTTCTTACTTAT
GATTGGATTGGTACACGGCCTTTAAAGGCATTATCTGATGATTTCTTTTA
TATCTGGGTTATAGATACCTTTTATGGTCCTAAGAAACacctccaaagtt
tttgacccaGTTATTTC Run BLAST on NCBI protein sequence of TCONS_00019356-protein >TCONS_00019356-protein ID=TCONS_00019356-protein|Name=TCONS_00019356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
LQTWDTFSLVQSFVVALMFIFHIYLDTKNKKMAVQMTHGVIFLLAIFTIL
NIYMVMQRYNNNHQNENNLESTKRSIIKDSTDLQQNILQINDIQKRLQRL
ETKSDFDRSLKEINNKTETLIERLVKTIWRPTNENKNTTYGTHRNLNIDD
GDLEWLDRDGAKDLANYGDGSCPINRNREAWQKMLRYWITLAKKYNIRYF
LTAGSLLGAWRDEEVIPYDQDMDIRIHIDDFDKFYPLRQRKFVWESYDDW
DMHFYFVRDWRLPYDLRRRYSCKGKLVPDYEGQCSFVDPNARLIYRNWHL
DLYAYTTYTDVVKFIPHSADWEYRKDEIFPLTRCNFMGIETRCPQKPVAI
FKNLYNAPFKPSKICANKTFVKV Run BLAST on NCBI transcript from alignment at sc0000325:186462..187878 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019356 ID=TCONS_00019356|Name=TCONS_00019356|organism=Clytia hemisphaerica|type=transcript|length=1417bp|location=Sequence derived from alignment at sc0000325:186462..187878 (Clytia hemisphaerica)
GAAATAACtgggtcaaaaactttggaggtGTTTCTTAGGACCATAAAAGG
TATCTATAACCCAGATATAAAAGAAATCATCAGATAATGCCTTTAAAGGC
CGTGTACCAATCCAATCATAAGTAAGAAAAGTAGAAAAGATTCAATGAAA
GACATCGATCTCTAAACATAAacgtcaaaaaaagtttttcaaatttcaaa
agttgttTCCCTAAAACTCAAATATCTACTAAATTAAATAAAGGTCATAT
TAAAGAATTTATCAAAAATCTAAATGCTAGAATATCCTTTAAAATCACAC
TTTAACAAAAGTTTTATTAGCACATATCTTAGATGGTTTAAAAGGTGCAT
TATAAAGGTTTTTAAATATTGCAACTGGTTTTTGTGGACATCGAGTTTCA
ATTCCCATAAAATTACATCTGGTTAAAGGAAAGATTTCATCTTTCCGATA
TTCCCAATCAGCAGAATGGGGTATAAACTTTACGACATCTGTATAAGTAG
TGTAAGCGTATAAATCCAAATGCCAATTCCTGTATATTAACCGAGCATTA
GGATCAACAAACGAGCATTGTCCTTCATAGTCGGGAACGAGTTTTCCTTT
ACACGAATACCGACGACGAAGGTCGTACGGGAGTCGCCAATCTCTGACAA
AATAAAAATGCATGTCCCAATCATCGTAGGATTCCCAAACGAATTTACGT
TGACGTAATGGATAGAATTTATCAAAATCATCAATATGAATCCGAATATC
CATGTCCTGGTCATAAGGAATAACCTCCTCGTCGCGCCATGCTCCTAGCA
GTGACCCAGCAGTTAGGAAATAACGGATGTTGTATTTTTTAGCTAGTGTA
ATCCAATACCGTAACATTTTCTGCCATGCTTCCCGGTTCCGGTTGATTGG
ACAAGACCCGTCACCATAATTGGCAAGATCTTTGGCGCCATCTCTGTCTA
GCCATTCTAAATCACCATCATCTATGTTAAGATTTCGATGTGTTCCATAA
gttgtgtttttgttttcattcgtCGGGCGCCAAATAGTTTTCACTAGACG
CTCTATTAAAGTCTCTGTTTTGTTGTTAATCTCCTTGAGAGATCTGTCAA
AATCAGATTTGGTTTCTAAGCGCTGAAGGCGCTTTTGTATGTCGTTTATT
TGTAAAATGTTTTGTTGCAAATCTGTGGAGTCTTTGATTATGGAACGTTT
TGTCGATTCTAAGTTGTTTTCGTTTTGATGATTGTTGTTGTATCGTTGCA
TGACCATATAAATATTGAGTATGGTAAAGATTGCTAGTAAAAAGATAACA
CCATGAGTCATTTGCACAgccattttcttgtttttggtATCTaaatatat
atgaaatataaaCATTAAAGCTACTACGAATGATTGTACAAGAGAAAACG
TGTCCCAAGTTTGTAAT Coding sequence (CDS) from alignment at sc0000325:186462..187878 >TCONS_00019356 ID=TCONS_00019356|Name=TCONS_00019356|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000325:186462..187878 (Clytia hemisphaerica)
TCACACTTTAACAAAAGTTTTATTAGCACATATCTTAGATGGTTTAAAAG
GTGCATTATAAAGGTTTTTAAATATTGCAACTGGTTTTTGTGGACATCGA
GTTTCAATTCCCATAAAATTACATCTGGTTAAAGGAAAGATTTCATCTTT
CCGATATTCCCAATCAGCAGAATGGGGTATAAACTTTACGACATCTGTAT
AAGTAGTGTAAGCGTATAAATCCAAATGCCAATTCCTGTATATTAACCGA
GCATTAGGATCAACAAACGAGCATTGTCCTTCATAGTCGGGAACGAGTTT
TCCTTTACACGAATACCGACGACGAAGGTCGTACGGGAGTCGCCAATCTC
TGACAAAATAAAAATGCATGTCCCAATCATCGTAGGATTCCCAAACGAAT
TTACGTTGACGTAATGGATAGAATTTATCAAAATCATCAATATGAATCCG
AATATCCATGTCCTGGTCATAAGGAATAACCTCCTCGTCGCGCCATGCTC
CTAGCAGTGACCCAGCAGTTAGGAAATAACGGATGTTGTATTTTTTAGCT
AGTGTAATCCAATACCGTAACATTTTCTGCCATGCTTCCCGGTTCCGGTT
GATTGGACAAGACCCGTCACCATAATTGGCAAGATCTTTGGCGCCATCTC
TGTCTAGCCATTCTAAATCACCATCATCTATGTTAAGATTTCGATGTGTT
CCATAAgttgtgtttttgttttcattcgtCGGGCGCCAAATAGTTTTCAC
TAGACGCTCTATTAAAGTCTCTGTTTTGTTGTTAATCTCCTTGAGAGATC
TGTCAAAATCAGATTTGGTTTCTAAGCGCTGAAGGCGCTTTTGTATGTCG
TTTATTTGTAAAATGTTTTGTTGCAAATCTGTGGAGTCTTTGATTATGGA
ACGTTTTGTCGATTCTAAGTTGTTTTCGTTTTGATGATTGTTGTTGTATC
GTTGCATGACCATATAAATATTGAGTATGGTAAAGATTGCTAGTAAAAAG
ATAACACCATGAGTCATTTGCACAgccattttcttgtttttggtATCTaa
atatatatgaaatataaaCATTAAAGCTACTACGAATGATTGTACAAGAG
AAAACGTGTCCCAAGTTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019356-exon-sc0000325-1491911889:186462..187878 | TCONS_00019356-exon-sc0000325-1491911889:186462..187878 | Clytia hemisphaerica | exon |
| TCONS_00019356-exon-sc0000325-1510915933:186462..187878 | TCONS_00019356-exon-sc0000325-1510915933:186462..187878 | Clytia hemisphaerica | exon |
| TCONS_00019356-exon-sc0000325-1575043694:186462..187878 | TCONS_00019356-exon-sc0000325-1575043694:186462..187878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:186462..187878 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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