|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019354 ID=TCONS_00019354|Name=TCONS_00019354|organism=Clytia hemisphaerica|type=transcript|length=1288bp
TGCTTGTTCCTCCCTCATTATaagtttcaatattttcatcgGTAGAAATT
TCCTCACTCGGAGCTGTTGACGGTGGGATTGTCTCGACCGAGTCTTCACT
ATTCTGACGATTGAAGTCTTTGGAACTGGCATTTAGAAAATCGATGTTTT
CCTCGTTAGAGGCTACGTTGCttgatttatcttttttcttagTAGAATGT
TCAGTATTTGATAAAGTGGGTCTTGAATTCGACAAATATTCATCGTCATC
AACGCCGTCGTTTTCCTCATTTTCTATGTATTCCTTTTGTTCCGTAGCTT
CTGCTCTATTGTCTTTATTCTTCATCGTAGAAGACTTTTCATCTGGAGTT
TTTGCTGTTGATGTTGGTACCCCTTTTGTATTACTATCATCAACCCTTCC
CTTGCTTTCTGTGTCAATTTTAGCTGGTGTGAGTTCTTTGTTCCCCATAG
TTTTAACATGAAGGTTTGTAgaagtattttctttttttactagATTATTC
CTCGCAGTATCTGTTGCATCTACTAACTCCGCTGGAGAACCTGTTTCAAG
CTCGCCTTTTAAAGCTGGCATCGTATGGTCCTCactattttgatcatttt
cgaTTTGCTTATCCTGCTCCTCTTTACCGTAAGGGTCCTCTTTGTTATTT
TCATGGTCACGTGGTTCTAAAGTCAATTTCTGATTGGTCTCTTCTGAGGT
TATACTTGCCTTAAGTTTGTTGTTCTGTTTCTTTTTCATGTGGTCCCAAA
AATGTTCAAATCTAACATTTTTGTTGGAGCGTTTCAAACTGTTTGACGGC
TTCATTGAGTTCGTTgaatattttaattgttctttttttaaatgatgatT
TAGNCGTTTCAAACTGTTTGGCGGCTTCATTGAGTTCGTTgaatatttta
attgttctttttttaaatgatgatTTAGGTCGTTTGTGACGTTGTTTGCT
CTTCGATTTTTGGTATATTTCTCGTTGTCATTAAAGTCTATAAACTCGCC
ATTAGAATCTTCCAGGTCTTTAAGACTGGGTGGTTTCCATAGTGTTTCCA
TGGTTGTCGGTGTTGTTGCTAGGTAACCAAACATGATGTCATTAAATAAC
GCACGAAATGTGAACACGCCGTAAAGACAAATGCATAATAGAATTGATCT
TTTAcgacaaagcaaatttttcattatttttttgtgttATAATTTCTGAA
ACAAAATGATACGAAAATGTCACTTTAACAGGCCCCACGTCAGCGGGGGA
GAGGGTGACTGGGCCCTGACCCGaccagattttttcaa Run BLAST on NCBI protein sequence of TCONS_00019354-protein >TCONS_00019354-protein ID=TCONS_00019354-protein|Name=TCONS_00019354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MKNLLCRKRSILLCICLYGVFTFRALFNDIMFGYLATTPTTMETLWKPPS
LKDLEDSNGEFIDFNDNEKYTKNRRANNVTNDLNHHLKKEQLKYSTNSMK
PPNSLKXLNHHLKKEQLKYSTNSMKPSNSLKRSNKNVRFEHFWDHMKKKQ
NNKLKASITSEETNQKLTLEPRDHENNKEDPYGKEEQDKQIENDQNSEDH
TMPALKGELETGSPAELVDATDTARNNLVKKENTSTNLHVKTMGNKELTP
AKIDTESKGRVDDSNTKGVPTSTAKTPDEKSSTMKNKDNRAEATEQKEYI
ENEENDGVDDDEYLSNSRPTLSNTEHSTKKKDKSSNVASNEENIDFLNAS
SKDFNRQNSEDSVETIPPSTAPSEEISTDENIETYNEGGTS Run BLAST on NCBI transcript from alignment at sc0000325:176934..178221 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019354 ID=TCONS_00019354|Name=TCONS_00019354|organism=Clytia hemisphaerica|type=transcript|length=1288bp|location=Sequence derived from alignment at sc0000325:176934..178221 (Clytia hemisphaerica)
ttgaaaaaatctggtCGGGTCAGGGCCCAGTCACCCTCTCCCCCGCTGAC
GTGGGGCCTGTTAAAGTGACATTTTCGTATCATTTTGTTTCAGAAATTAT
aacacaaaaaaataatgaaaaatttgctttgtcgTAAAAGATCAATTCTA
TTATGCATTTGTCTTTACGGCGTGTTCACATTTCGTGCGTTATTTAATGA
CATCATGTTTGGTTACCTAGCAACAACACCGACAACCATGGAAACACTAT
GGAAACCACCCAGTCTTAAAGACCTGGAAGATTCTAATGGCGAGTTTATA
GACTTTAATGACAACGAGAAATATACCAAAAATCGAAGAGCAAACAACGT
CACAAACGACCTAAatcatcatttaaaaaaagaacaattaaaatattcAA
CGAACTCAATGAAGCCGCCAAACAGTTTGAAACGNCTAAatcatcattta
aaaaaagaacaattaaaatattcAACGAACTCAATGAAGCCGTCAAACAG
TTTGAAACGCTCCAACAAAAATGTTAGATTTGAACATTTTTGGGACCACA
TGAAAAAGAAACAGAACAACAAACTTAAGGCAAGTATAACCTCAGAAGAG
ACCAATCAGAAATTGACTTTAGAACCACGTGACCATGAAAATAACAAAGA
GGACCCTTACGGTAAAGAGGAGCAGGATAAGCAAAtcgaaaatgatcaaa
atagtGAGGACCATACGATGCCAGCTTTAAAAGGCGAGCTTGAAACAGGT
TCTCCAGCGGAGTTAGTAGATGCAACAGATACTGCGAGGAATAATctagt
aaaaaaagaaaatacttcTACAAACCTTCATGTTAAAACTATGGGGAACA
AAGAACTCACACCAGCTAAAATTGACACAGAAAGCAAGGGAAGGGTTGAT
GATAGTAATACAAAAGGGGTACCAACATCAACAGCAAAAACTCCAGATGA
AAAGTCTTCTACGATGAAGAATAAAGACAATAGAGCAGAAGCTACGGAAC
AAAAGGAATACATAGAAAATGAGGAAAACGACGGCGTTGATGACGATGAA
TATTTGTCGAATTCAAGACCCACTTTATCAAATACTGAACATTCTActaa
gaaaaaagataaatcaaGCAACGTAGCCTCTAACGAGGAAAACATCGATT
TTCTAAATGCCAGTTCCAAAGACTTCAATCGTCAGAATAGTGAAGACTCG
GTCGAGACAATCCCACCGTCAACAGCTCCGAGTGAGGAAATTTCTACcga
tgaaaatattgaaacttATAATGAGGGAGGAACAAGCA Coding sequence (CDS) from alignment at sc0000325:176934..178221 >TCONS_00019354 ID=TCONS_00019354|Name=TCONS_00019354|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at sc0000325:176934..178221 (Clytia hemisphaerica)
atgaaaaatttgctttgtcgTAAAAGATCAATTCTATTATGCATTTGTCT
TTACGGCGTGTTCACATTTCGTGCGTTATTTAATGACATCATGTTTGGTT
ACCTAGCAACAACACCGACAACCATGGAAACACTATGGAAACCACCCAGT
CTTAAAGACCTGGAAGATTCTAATGGCGAGTTTATAGACTTTAATGACAA
CGAGAAATATACCAAAAATCGAAGAGCAAACAACGTCACAAACGACCTAA
atcatcatttaaaaaaagaacaattaaaatattcAACGAACTCAATGAAG
CCGCCAAACAGTTTGAAACGNCTAAatcatcatttaaaaaaagaacaatt
aaaatattcAACGAACTCAATGAAGCCGTCAAACAGTTTGAAACGCTCCA
ACAAAAATGTTAGATTTGAACATTTTTGGGACCACATGAAAAAGAAACAG
AACAACAAACTTAAGGCAAGTATAACCTCAGAAGAGACCAATCAGAAATT
GACTTTAGAACCACGTGACCATGAAAATAACAAAGAGGACCCTTACGGTA
AAGAGGAGCAGGATAAGCAAAtcgaaaatgatcaaaatagtGAGGACCAT
ACGATGCCAGCTTTAAAAGGCGAGCTTGAAACAGGTTCTCCAGCGGAGTT
AGTAGATGCAACAGATACTGCGAGGAATAATctagtaaaaaaagaaaata
cttcTACAAACCTTCATGTTAAAACTATGGGGAACAAAGAACTCACACCA
GCTAAAATTGACACAGAAAGCAAGGGAAGGGTTGATGATAGTAATACAAA
AGGGGTACCAACATCAACAGCAAAAACTCCAGATGAAAAGTCTTCTACGA
TGAAGAATAAAGACAATAGAGCAGAAGCTACGGAACAAAAGGAATACATA
GAAAATGAGGAAAACGACGGCGTTGATGACGATGAATATTTGTCGAATTC
AAGACCCACTTTATCAAATACTGAACATTCTActaagaaaaaagataaat
caaGCAACGTAGCCTCTAACGAGGAAAACATCGATTTTCTAAATGCCAGT
TCCAAAGACTTCAATCGTCAGAATAGTGAAGACTCGGTCGAGACAATCCC
ACCGTCAACAGCTCCGAGTGAGGAAATTTCTACcgatgaaaatattgaaa
cttATAATGAGGGAGGAACAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019354-exon-sc0000325-1491911889:176934..178221 | TCONS_00019354-exon-sc0000325-1491911889:176934..178221 | Clytia hemisphaerica | exon |
| TCONS_00019354-exon-sc0000325-1510915933:176934..178221 | TCONS_00019354-exon-sc0000325-1510915933:176934..178221 | Clytia hemisphaerica | exon |
| TCONS_00019354-exon-sc0000325-1575043694:176934..178221 | TCONS_00019354-exon-sc0000325-1575043694:176934..178221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:176934..178221 . |
Blast
The following BLAST results are available for this feature:
|
