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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019318 ID=TCONS_00019318|Name=TCONS_00019318|organism=Clytia hemisphaerica|type=transcript|length=395bp
ATCAAGTTGATTTCATTCATGAAAGACTACGATTTAAAGGTTGTTAGAAT
GAAAACTAGGTATCTAAAATAAATTGCAGCCACGATACAACAAAACATGT
CTACTGCTATCTTCATGTTGGTATTTGGACTAATGCTATCCTTCACACAC
GCCTTAAattttgatgttttcaattcTTTCATTTTGACGGATGGCATCAA
TGGTGCTCATAAATCTCCTGATATTGACAACGCTGTCTATTTCAAGAAAA
GTCATCATGGTATTGTTGCGTTACCAGCAATACGAGATGAGTTCATTGAA
GTGATGGGGACGTATAATTCATTTATCATGGCTTTCAAGATGTCACCAGA
ACCATTCCATAAAGGATCCATAATCTGGTTGGAACAGAAAGACAC Run BLAST on NCBI protein sequence of TCONS_00019318-protein >TCONS_00019318-protein ID=TCONS_00019318-protein|Name=TCONS_00019318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MSTAIFMLVFGLMLSFTHALNFDVFNSFILTDGINGAHKSPDIDNAVYFK
KSHHGIVALPAIRDEFIEVMGTYNSFIMAFKMSPEPFHKGSIIWLEQKD Run BLAST on NCBI transcript from alignment at sc0000325:263252..268026+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019318 ID=TCONS_00019318|Name=TCONS_00019318|organism=Clytia hemisphaerica|type=transcript|length=4775bp|location=Sequence derived from alignment at sc0000325:263252..268026+ (Clytia hemisphaerica)
ATCAAGTTGATTTCATTCATGAAAGACTACGATTTAAAGGTAAGATTATA
gggttatttttgaaatttccaccatAATATGAAAAACATACAACACTAAC
AATCCTACAAGCCCTGAGAAGAGGGGGGGGGTAACTTAGGCAAAATGCGT
GGCAGGTATGTGCGAGCTGTAAGGGTTCCATTTTCACACCCTCGGGgtac
aaaaatcattaaaaatcaattgagCCTCTGTAAGAGTTGTGCTCGCTCAA
AAggtcataaatttttgaaattttcactttttgcttgaaaattttGGTCG
AAATTTCTGGAAAAACGGTCaagaaattgacaaaattttcaaatttcagt
cTCTCGAATGGGTCGACTTTAGAACTACCCTTATTTTCTAAAAAGTGATC
CTACTGAAAAACTAGGATTTGATATTAAAACGTGTCGTCGTGTCTATTTT
AGAGGGTccagctggagtttttacaagatacttacAAATCAGAGATGCTT
TGAGCATAGAACTTTTTTCTATCGTATacattaaaattgatttataAAAT
ACAGAACATATAGAAGGTAAATGAAAGATAAATACCTCAGGCGTCCACAA
CACTCTCCAAACTATCTAcacccccaggtcccgaggtcccgaagtcccga
gttgaactgtgccaacactctccaaagtatctacaaccccaggtcccgaa
gtcccgagctgaactgtgccaacacttTCCAAAGTACagtcgacgctctc
taattcgacgttctactattcgataggctcccatattcgatgaaatctta
agtccccgtcaacaagaaactctcataaacgatgctcccttattcgataa
actctctttttcgataaaaattcaattccccttgaaggtcgaattagaga
gcgtcaactgtatctacaaccccaggtcccgaggtcccgaagtctcGAGT
Taaactgtgccaacactctccaaagtatctacaaccccatgtcccgaggt
cccgaagtcccgagttgaactgtgccaacactctccaaagtatctacaac
cccaggtcccaaggtcccgaagtcccgagttgaactgtgccaacactttc
caaagtatctacaaccctaggtcccgaggtcccgaagtcccgagctGAAC
TGTGCCAAcgctctccaaagtatctactcCCCCAAGTCctgaggtcccga
agtcccgagttgaactgtgccaacactctccaaagtatttACAACCCCAG
GTTCCGAGGTCCCGAAGTTCCaagttgaactgtgccaacactctccaaag
tatctactcccccaagtcccgaagtcccgaagtcccgagttgaactgtgc
caacactctccaaagtatctacaaccccaggtcccgaggtcccgagttga
GTAATGTTCTATTcaccaaaaaaaacaacccACACCTCGCCCAGGTCCCG
AGTTGAATGAACTATATCAATAATCGTCAAataagaaacaagaaacaaaa
catcttttcaaataaaaattttcactaGAAGTCAATAATAATATTGATAT
ATAGTTCAActtgggacctcgggacctcgggacctgggctgtttaatttt
tttggagaGAATATTGAaatagttcaactcgggacttcggaaCTTGGGGT
TAGAGAATTTTTAGGAGGTATAACATATCGGGTGTGCTTGTTCCGTAAGA
TACACACAAAGAAAATCACATCccagcttgtaaaaactccagctcatccg
aTTTTAGATAGGGTCCAGATAAAAATTCAAGAgttttttccactggggac
aaaattttagccaaatttgggGTCCCAGCGGTTCTAGGTAATTGACGTAC
TAGTTATGTGCGACCATTAAGGGGCCGTTTTTTTTACCATGCCAAATCAC
TTAAGGGTttacaaaagaacaaaacagTTTCAGAAAGGTCGGGATTTCCC
TTTTTGGGACTATTTAAGGGTATTTAAACCATTAAGGGGAAAAAATCCCC
ACAGTAGTGTCCCTTTAACGACCTCCCTAGCTCAAATTTCTCCTTAGTTC
GAAACAAGTTTTCTTAAGTCCATTCACTAACAATCcctttataaacctta
ctccattactcgaaatttccttaataaCTCGAACAAAATTCTTATCtgtg
tgtgttcgagttatgtaAACTTTACTGTATTACAAGTGAAATGATCGGGC
AGGTCAGTAAAGAAGCTTGAAGTCGTCAATATAAAACAagacttttttca
aaggaagtttatcaggatttaaatttttggtAATGATATTAAGTTTGATA
AAGTATTATGCGGTAGTGAGAAATGATATGAGGAATTAAATGTGATCAAA
ATAAATGATAACAAGTTTGATTTGAAGACTTTCTCTCTAATGTTAAATCA
CAGCCACGTTTTTTGATGAGCAAACGTGTGATTCtgtgtttgttattttt
gtttcaaaggtAGTTGGTTCATTTGTTGGTAAGGGgctgtaggggttcga
aatacctctttttttcgtcaaatcctgtaataccgtactaaaaaagggct
aATTCCGTAACACCGTAAAAGTAGTAGTATATGGATAGGCAGTAAAGGCA
AGTGGTACAGTAGAGATAGATCTTGATTACTTCCAGGCGGTCGGGATTCG
ATTTCTACTCGGTGGTATGATTCATTTGGCAAGTGAAGCCTTCACCATAG
GGCCATGGCCAACCCATGTCATGTTAGGGAAATTGCGTCTAGACAGAAAT
TCAATAAGTATGTCGGCGACTGTGCTAGGTATCATGCACTAGTCTGTATT
AACAACGCTGTCTACTTCAAAAAAGTCATATTGGTATTGTATTATATTAT
TCCAGCAATATTGGAGATTAGTTTATTGAAGGGGTGGGGATGATTCATTT
ATCATCGTGTTGGGCTTGTTTCNaggttgtaggggttcgaaataccgttt
ttccgtctcttttttcgtcaaatctcGTAACatcgtactaaaaaagggcc
aatcccgtcacaccttAAAAGTAGTAGTATATGGATAGGCAGTAAAGGTA
ATTAGCATAGAAGATATCGATCTTGATTACTTTCAGGCGAACGGGGTTCG
ATTTCTACTCGGTGGTATGATTCATTTGGCAAGTGAATGTGCCTTCACCA
TAGGGCCATggccaacccatgccatgttAGGGAAATCGCGTCTAGACAGA
AATTCAATAAGTATGTCGGCGACTGTGCTAGGTTTCATGCACTAGTCCAG
TTTCCTTATATTAACAACGCTGTCTACTTCAAAAAAGTCATATTGGTATT
GTATTATATTATTACCAGCAATATTCGAGATTAGTTTATTGAAGGGATGG
GGATGATTCATTTATCATCGTGTTGGGCTTGTTTCCTagtcttttttttt
gtctcgactgcggtcgagcaatgatgatgatgatgatgatgatgtttcCT
AGTGGCACACGCCGAGTTAACGCAGAACGTAGACAGCTTATAGACCCCTT
TAAAAAATAGGTACAAGAATCTTCTGTAAAAGAGATCATAGGCAAGTAAG
AAACGCCTCTTACGGTTCGACAAAATGAGTTCTTTGTTAGGTGTAGATGA
CAAATATTCTCGACATCAAGAGCTTGGTAAGCCACACAATATATTTGAAA
CAACAAAGTGTCATCTGAGTAAGGCTCCTGGACAGTGGTGTGTTGGGTGG
ACAAAGGTTTTGggtaatttctttttcttttgatcgaAAACTGCCAATTC
TAAGGTGTGAAAAAATAAACGGGTGCCAAAACTAGTAATAAGAGCGTCTT
ATTGCTCCCTTTTTATTTCGGCGCCCCgcccaaaaaataaaaatagacta
CTGGGGGCACTGCCTCCTATCCCCCTGCCCCCCTACCACCACGTTACTGC
TCCTAGAAACAATCAAAAGGCTACGTAAATGGAGGGTTGAAATATCACTG
CATTTTCTTAAATCGCTGTATCACTGACCTCACACATTTGAATTTACTTT
GTTTTTCAGGTTGTTAGAATGAAAACTAGGTATCTAAAATAAATTGCAGC
CACGATACAACAAAACATGTCTACTGCTATCTTCATGTTGGTATTTGGAC
TAATGCTATCCTTCACACACGCCTTAAGTAAGTGGAATTACCCAAGCAAA
AGTTAATATGCTCTTATCTGTTAAGGATCTGTTAAGGTGGTatcagtttt
gaaattttaacaaagTTTTAATAGTCAAATAACATTCAAATAAAATCATC
AAGGTTGTCAACTTTGTTCTTGAAGATgaacttttccagaaaattaattt
ttggtcCCAATTGTGGGGGCCAACAATTTATTATGAAATGCAGGGATTCT
CATGACCAGGAGTTACCTGATGTAGCACCATTGGACGTTAGGTAAAGTTT
CAAGCTACAATGGCTCCTTTGCAGATACCAATGTCAAAAATAATTCCGAC
CAAAGATGGTGGAAAAAGTTTAGTCCTAGgttttatcttgatttttttaa
tattaattTTGGATTCAACACCTTTTTACATCTTcagattttgatgtttt
caattcTTTCATTTTGACGGATGGCATCAATGGTGCTCATAAATCTCCTG
ATATTGACAACGCTGTCTATTTCAAGAAAAGTCATCATGGTATTGTTGCG
TTACCAGCAATACGAGATGAGTTCATTGAAGTGATGGGGACGTATAATTC
ATTTATCATGGCTTTCAAGATGTCACCAGAACCATTCCATAAAGGATCCA
TAATCTGGTTGGAACAGAAAGACAC Coding sequence (CDS) from alignment at sc0000325:263252..268026+ >TCONS_00019318 ID=TCONS_00019318|Name=TCONS_00019318|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000325:263252..268026+ (Clytia hemisphaerica)
ATGTCTACTGCTATCTTCATGTTGGTATTTGGACTAATGCTATCCTTCAC
ACACGCCTTAAattttgatgttttcaattcTTTCATTTTGACGGATGGCA
TCAATGGTGCTCATAAATCTCCTGATATTGACAACGCTGTCTATTTCAAG
AAAAGTCATCATGGTATTGTTGCGTTACCAGCAATACGAGATGAGTTCAT
TGAAGTGATGGGGACGTATAATTCATTTATCATGGCTTTCAAGATGTCAC
CAGAACCATTCCATAAAGGATCCATAATCTGGTTGGAACAGAAAGACATG
TCTACTGCTATCTTCATGTTGGTATTTGGACTAATGCTATCCTTCACACA
CGCCTTAAattttgatgttttcaattcTTTCATTTTGACGGATGGCATCA
ATGGTGCTCATAAATCTCCTGATATTGACAACGCTGTCTATTTCAAGAAA
AGTCATCATGGTATTGTTGCGTTACCAGCAATACGAGATGAGTTCATTGA
AGTGATGGGGACGTATAATTCATTTATCATGGCTTTCAAGATGTCACCAG
AACCATTCCATAAAGGATCCATAATCTGGTTGGAACAGAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019318-exon-sc0000325-1491911889:263252..263290 | TCONS_00019318-exon-sc0000325-1491911889:263252..263290 | Clytia hemisphaerica | exon |
| TCONS_00019318-exon-sc0000325-1510915933:263252..263290 | TCONS_00019318-exon-sc0000325-1510915933:263252..263290 | Clytia hemisphaerica | exon |
| TCONS_00019318-exon-sc0000325-1575043694:263252..263290 | TCONS_00019318-exon-sc0000325-1575043694:263252..263290 | Clytia hemisphaerica | exon |
| TCONS_00019318-exon-sc0000325-1491911889:267261..267378 | TCONS_00019318-exon-sc0000325-1491911889:267261..267378 | Clytia hemisphaerica | exon |
| TCONS_00019318-exon-sc0000325-1510915933:267261..267378 | TCONS_00019318-exon-sc0000325-1510915933:267261..267378 | Clytia hemisphaerica | exon |
| TCONS_00019318-exon-sc0000325-1575043694:267261..267378 | TCONS_00019318-exon-sc0000325-1575043694:267261..267378 | Clytia hemisphaerica | exon |
| TCONS_00019318-exon-sc0000325-1491911889:267789..268026 | TCONS_00019318-exon-sc0000325-1491911889:267789..268026 | Clytia hemisphaerica | exon |
| TCONS_00019318-exon-sc0000325-1510915933:267789..268026 | TCONS_00019318-exon-sc0000325-1510915933:267789..268026 | Clytia hemisphaerica | exon |
| TCONS_00019318-exon-sc0000325-1575043694:267789..268026 | TCONS_00019318-exon-sc0000325-1575043694:267789..268026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:263252..268026 + |
Blast
The following BLAST results are available for this feature:
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