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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019286 ID=TCONS_00019286|Name=TCONS_00019286|organism=Clytia hemisphaerica|type=transcript|length=2426bpRun BLAST on NCBI protein sequence of TCONS_00019286-protein >TCONS_00019286-protein ID=TCONS_00019286-protein|Name=TCONS_00019286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp MAVYKQRLDQFEECLKQSKIDLKQFQTLCFAGIPDKPSLRSLAWKILLYYRun BLAST on NCBI transcript from alignment at sc0000323:258413..286429- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019286 ID=TCONS_00019286|Name=TCONS_00019286|organism=Clytia hemisphaerica|type=transcript|length=28017bp|location=Sequence derived from alignment at sc0000323:258413..286429- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000323:258413..286429- >TCONS_00019286 ID=TCONS_00019286|Name=TCONS_00019286|organism=Clytia hemisphaerica|type=CDS|length=19620bp|location=Sequence derived from alignment at sc0000323:258413..286429- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00019286 vs. Swiss-Prot (Human)
Match: TBC13 (TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3) HSP 1 Score: 454.136 bits (1167), Expect = 8.969e-152 Identity = 222/396 (56.06%), Postives = 286/396 (72.22%), Query Frame = 2
Query: 35 AVYKQRLDQFEECLKQSKIDLKQFQTLCFAGIPDKPSLRSLAWKILLYYLPRNHDDWDDVLRKQRAIYKNYVEEIVAHPADCKE----AKEHV---DHPLNMNPDSQWITYFKDNEVLLQIDRDVRRLCPDISFFQHPTKYPIQTIIDVSSSNQTLTKRVETCVLDNSVIGTSKGGLSNITIKKYSN-----EEYVVLPQGQEAHWQVVERILFIYAKLNPGISYVQGMNEIIGPIYYTFASDADEKWKAHAEADAFFCFTAIMAEIRDNFIKTLDDSELGIGQDMNKLYCLLQVKDEEVYDDLSKKGMKPQFFAFRWITLLLSQEFYLPDVIRLWDSLFADQKRFDFLLYVCLAMLVLIRDQILEGDFAKTMKIIQNFPHDQYDMATIIRKAVEL 1186
+++K R+ F++ LK+ I L++ + L F+GIP + LR L WKILL YLP W +L KQR +Y ++ E++ P K ++E V DHPLN NPDS+W TYFKDNEVLLQID+DVRRLCPDISFFQ T YP I+D + +TL KRVE L + + ++ G++N++ ++ EY VLP G EAHW+VVERILFIYAKLNPGI+YVQGMNEI+GP+YYTFA+D + +WK HAEAD FFCFT +MAEIRDNFIK+LDDS+ GI M K+Y L+ KD E+Y L ++ +KPQFFAFRW+TLLLSQEF LPDVIR+WDSLFAD RFDFLL VC AML+LIR+Q+LEGDF M+++Q++P D+ I++KA EL
Sbjct: 3 SLHKSRIADFQDVLKEPSIALEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRELYAQFLREMIIQPGIAKANMGVSREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRATDYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNSVPSSLNEYEVLPNGCEAHWEVVERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYLKLQEQNIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADDNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLLQDYPIT--DVCQILQKAKEL 396 The following BLAST results are available for this feature:
BLAST of TCONS_00019286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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