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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019182 ID=TCONS_00019182|Name=TCONS_00019182|organism=Clytia hemisphaerica|type=transcript|length=4094bpRun BLAST on NCBI protein sequence of TCONS_00019182-protein >TCONS_00019182-protein ID=TCONS_00019182-protein|Name=TCONS_00019182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=832bp MRSGSVGDMETLSLSSDPGGKDLKDLWFQLGMDRELLTSDNTMESLNELARun BLAST on NCBI transcript from alignment at sc0000320:167794..191620- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019182 ID=TCONS_00019182|Name=TCONS_00019182|organism=Clytia hemisphaerica|type=transcript|length=23827bp|location=Sequence derived from alignment at sc0000320:167794..191620- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000320:167794..191620- >TCONS_00019182 ID=TCONS_00019182|Name=TCONS_00019182|organism=Clytia hemisphaerica|type=CDS|length=44982bp|location=Sequence derived from alignment at sc0000320:167794..191620- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019182 vs. Swiss-Prot (Human)
Match: KPCD1 (Serine/threonine-protein kinase D1 OS=Homo sapiens GN=PRKD1 PE=1 SV=2) HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0 Identity = 413/851 (48.53%), Postives = 538/851 (63.22%), Query Frame = 2
Query: 197 FQLGMDRELL------TSDNTMESLNELAYTIIDTKYPNQTKADLLESVLLFKHDYLSQGQLILVTSPDQVTNGDTIEIVIKATYFNGSRSEIRPHTLDVHSYKSPTFCDHCGVMLFGLVRQGLKCEGCGGNFHKRCAFKIPNNCTG------DNAPKFGSLQQRSVSQQWSV-ASGESVISNASNSSFMSTGSFKERRATWSGNSGRPAELDR-LVNKLEIPHTFVVHSYKRPTVCHVCRKLLRGLFRQGYQCKDCKFNCHKRCFERAPRNCLGEIS---------------MERGDSISDETDSTGIED------------TISQPDDNGDEVSSPSNDEPEP---ISEQLSNQIPLQRIAMSVRKKKYRGSKILRGGWMVHFTNTNRTKKVHYWRLDTKNICLFIDENARDPEFEIPLSEILSVDSNLEPMGSR----HGRNPYLFTLKTNTTIYHCGERDDFDDNGTLIPANPKSGKGTRIAIAWADDIKSAYQPVSINQQDVMMQQHPKPPSPEPGEEAVGKRQEIQAEDA-----------SQKDISQVYQVFADEILGSGQFGVVYGGVHRKTGKEVAIKVIDKFRFPTKEERALKNEVTILQVINHPAVVNLEQMFETPERIFVVMQKMKGDMLEMILNSPKGRLSERQTKFIVHQILVALHFLHGRDIVHCDLKPENVLLSGVLTASGLPQIKLCDFGFARIIGRESFRRSVVGTPAYLAPEVLSNRKYNRTLDMWXXXXXXXXXXXXTFPFNEEEDISDQIKNAAFMYPPNPWAEISEESCDLIGKLLQVKKESRLSCQQALLHVWMQDFNTFKELRGLEEMIGTRYLTHESDDEAWSRYG 2572
Q+G+ RE + + D ++ + E+A +I+D K+P + + +LLF+HD S+ L LV + + GD IE+V+ A+ +IRPH L VHSY++P FCDHCG ML+GLVRQGLKCEGCG N+HKRCAFKIPNNC+G N G R+ S + S A E ++ + + SF+ +E+R+ GRP LD+ L++K+++PHTFV+HSY RPTVC C+KLL+GLFRQG QCKDC+FNCHKRC + P NCLGE++ ME G +D ++G+ D +++ ++ E+ P D + IS SN IPL R+ SV+ K + S +++ GWMVH+T+ + +K HYWRLD+K I LF ++ EIPLSEILS LEP+ + +G NP+ F + T +Y+ GE + + + SG G +A W I+ A PV P +VG + + + DIS VYQ+F DE+LGSGQFG+VYGG HRKTG++VAIK+IDK RFPTK+E L+NEV ILQ ++HP VVNLE MFETPER+FVVM+K+ GDMLEMIL+S KGRL E TKF++ QILVAL LH ++IVHCDLKPENVLL+ +A PQ+KLCDFGFARIIG +SFRRSVVGTPAYLAPEVL N+ YNR+LDMWSVGVIIYVS+SGTFPFNE+EDI DQI+NAAFMYPPNPW EIS E+ DLI LLQVK R S + L H W+QD+ T+ +LR LE IG RY+THESDD W +Y
Sbjct: 53 LQIGLSREPVLLLQDSSGDYSLAHVREMACSIVDQKFPECGFYGMYDKILLFRHDPTSENILQLVKAASDIQEGDLIEVVLSASA-TFEDFQIRPHALFVHSYRAPAFCDHCGEMLWGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRRRRLSNVSLTGVSTIRTSSAELSTSAPDEPLLQKSPSESFIG----REKRSNSQSYIGRPIHLDKILMSKVKVPHTFVIHSYTRPTVCQYCKKLLKGLFRQGLQCKDCRFNCHKRCAPKVPNNCLGEVTINGDLLSPGAESDVVMEEGSDDNDSERNSGLMDDMEEAMVQDAEMAMAECQNDSGEMQDPDPDHEDANRTISPSTSNNIPLMRVVQSVKHTKRKSSTVMKEGWMVHYTSKDTLRKRHYWRLDSKCITLFQNDTGSRYYKEIPLSEILS----LEPVKTSALIPNGANPHCFEITTANVVYYVGENVVNPSSPSPNNSVLTSGVGADVARMWEIAIQHALMPVI------------------PKGSSVGTGTNLHRDISVSISVSNCQIQENVDISTVYQIFPDEVLGSGQFGIVYGGKHRKTGRDVAIKIIDKLRFPTKQESQLRNEVAILQNLHHPGVVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPEHITKFLITQILVALRHLHFKNIVHCDLKPENVLLA---SADPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDIHDQIQNAAFMYPPNPWKEISHEAIDLINNLLQVKMRKRYSVDKTLSHPWLQDYQTWLDLRELECKIGERYITHESDDLRWEKYA 873 The following BLAST results are available for this feature:
BLAST of TCONS_00019182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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