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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019170 ID=TCONS_00019170|Name=TCONS_00019170|organism=Clytia hemisphaerica|type=transcript|length=891bp
GAAAGGTTATTTTTGtatcaattttctttatcttaaggcgggttaaaaat
attatttagtCTTCACAGAACATAGGGGCACTTCAATGTTTCAACAGAGA
GGTTTTGTTACAAAGCCAAGAATTCTACATGAGTTGAAGCAAAGTTTTTG
CACATCGATGagtgctgaatcagcagaaaatttgataaaatggCATTCAA
GCAATAACTTGTtattcgaaaatgaagaaacaATATTAAGAGATATTTAC
GCTCGGAAGGAAGAATTCGCGAAAGAAAACGCTCGTCACCgtaaaaggat
tttcgagttaCGACGTAAGCAGGCGGAAGAAGAAGAGAGAATGCAGGAGA
TTTTCAAATATGGTATCGATCTTTGGCATCACCGGAAATTCGCTCATTTA
AAAGTAAACATTCGTGAAGAGAAACAGCCACTTAAAGCTGAAGTAAATCA
AGGAAaaatcgaaagcgaaagtaTTATAGATAGGACACCACCACCTTTTC
TCCCACCACTTTACAGACAAGTGAAGAACGAATTGAAACGAATCGATTTT
GGATGCGATATGACGAATAAACCTTTAAATATCCGGAACATCTGTATGAC
TAGATATTTAAGATTGCCAGAAAAATATATTCCTAAAACgtaaagctttt
gttagatAGTTCAAGAATTGTGTCCCTTGTTTTTAACAAAGATGCTGAAA
ATATATTCCTAAATGTAACATAAAGACCAGATTTAGTTCAATAGGACACT
CAAAGTTTTATGGTTTCGAAAGGAATATGCTATCTTAAATTTTACAAAtg
attcaatatcaaaaagcgaTTTCAACTGATTTCAATTTAAAGACTTGCTA
AGGGTTTTGATACTGGAACGGACgatatttttttgtcattt Run BLAST on NCBI protein sequence of TCONS_00019170-protein >TCONS_00019170-protein ID=TCONS_00019170-protein|Name=TCONS_00019170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MFQQRGFVTKPRILHELKQSFCTSMSAESAENLIKWHSSNNLLFENEETI
LRDIYARKEEFAKENARHRKRIFELRRKQAEEEERMQEIFKYGIDLWHHR
KFAHLKVNIREEKQPLKAEVNQGKIESESIIDRTPPPFLPPLYRQVKNEL
KRIDFGCDMTNKPLNIRNICMTRYLRLPEKYIPKT Run BLAST on NCBI transcript from alignment at sc0000320:336184..337141+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019170 ID=TCONS_00019170|Name=TCONS_00019170|organism=Clytia hemisphaerica|type=transcript|length=958bp|location=Sequence derived from alignment at sc0000320:336184..337141+ (Clytia hemisphaerica)
GAAAGGTTATTTTTGtatcaattttctttatcttaaggcgggttaaaaat
attatttagtCTTCACAGAACATAGGGGCACTTCAATGTTTCAACAGAGA
GGTTTTGTTACAAAGCCAAGAATTCTACATGAGTTGAAGCAAAGTTTTTG
CACATCGATGagtgctgaatcagcagaaaatttgataaaatggCATTCAA
GCAATAACTTGTtattcgaaaatgaagaaacaATATTAAGAGATATTTAC
GCTCGGAAGGAAGAATTCGCGAAAGAAAACGCTCGTCACCgtaaaaggat
tttcgagttaCGACGTAAGCAGGCGGAAGAAGAAGAGAGAATGCAGGAGA
TTTTCAAATATGGTATCGATCTTTGGCATCACCGGAAATTCGCTCATTTA
AAAGTAAACATTCGTGAAGAGAAACAGCCACTTAAAGCTGAAGTAAATCA
AGGAAaaatcgaaagcgaaagtaTTATAGATAGGACACCACCACCTTTTC
TCCCACCACTTTACAGACAAGTGAAGAACGAATTGAAACGAATCGATTTT
GGATGCGATATGACGAATAAACCTTTAAATATCCGGAACATCTGTATGAC
TAGATATTTAAGATTGCCAGAAAAATATANTGAATAAACCTGTAAATAAT
CGGAACATCTGTATGACTAGATATTTAAGATTGCCAGAAAAATATATTCC
TAAAACgtaaagcttttgttagatAGTTCAAGAATTGTGTCCCTTGTTTT
TAACAAAGATGCTGAAAATATATTCCTAAATGTAACATAAAGACCAGATT
TAGTTCAATAGGACACTCAAAGTTTTATGGTTTCGAAAGGAATATGCTAT
CTTAAATTTTACAAAtgattcaatatcaaaaagcgaTTTCAACTGATTTC
AATTTAAAGACTTGCTAAGGGTTTTGATACTGGAACGGACgatatttttt
tgtcattt Coding sequence (CDS) from alignment at sc0000320:336184..337141+ >TCONS_00019170 ID=TCONS_00019170|Name=TCONS_00019170|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000320:336184..337141+ (Clytia hemisphaerica)
ATGTTTCAACAGAGAGGTTTTGTTACAAAGCCAAGAATTCTACATGAGTT
GAAGCAAAGTTTTTGCACATCGATGagtgctgaatcagcagaaaatttga
taaaatggCATTCAAGCAATAACTTGTtattcgaaaatgaagaaacaATA
TTAAGAGATATTTACGCTCGGAAGGAAGAATTCGCGAAAGAAAACGCTCG
TCACCgtaaaaggattttcgagttaCGACGTAAGCAGGCGGAAGAAGAAG
AGAGAATGCAGGAGATTTTCAAATATGGTATCGATCTTTGGCATCACCGG
AAATTCGCTCATTTAAAAGTAAACATTCGTGAAGAGAAACAGCCACTTAA
AGCTGAAGTAAATCAAGGAAaaatcgaaagcgaaagtaTTATAGATAGGA
CACCACCACCTTTTCTCCCACCACTTTACAGACAAGTGAAGAACGAATTG
AAACGAATCGATTTTGGATGCGATATGACGAATAAACCTTTAAATATCCG
GAACATCTGTATGACTAGATATTTAAGATTGCCAGAAAAATATATTCCTA
AAACgtaaATGTTTCAACAGAGAGGTTTTGTTACAAAGCCAAGAATTCTA
CATGAGTTGAAGCAAAGTTTTTGCACATCGATGagtgctgaatcagcaga
aaatttgataaaatggCATTCAAGCAATAACTTGTtattcgaaaatgaag
aaacaATATTAAGAGATATTTACGCTCGGAAGGAAGAATTCGCGAAAGAA
AACGCTCGTCACCgtaaaaggattttcgagttaCGACGTAAGCAGGCGGA
AGAAGAAGAGAGAATGCAGGAGATTTTCAAATATGGTATCGATCTTTGGC
ATCACCGGAAATTCGCTCATTTAAAAGTAAACATTCGTGAAGAGAAACAG
CCACTTAAAGCTGAAGTAAATCAAGGAAaaatcgaaagcgaaagtaTTAT
AGATAGGACACCACCACCTTTTCTCCCACCACTTTACAGACAAGTGAAGA
ACGAATTGAAACGAATCGATTTTGGATGCGATATGACGAATAAACCTTTA
AATATCCGGAACATCTGTATGACTAGATATTTAAGATTGCCAGAAAAATA
TATTCCTAAAACgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019170-exon-sc0000320-1491911889:336184..336772 | TCONS_00019170-exon-sc0000320-1491911889:336184..336772 | Clytia hemisphaerica | exon |
| TCONS_00019170-exon-sc0000320-1510915933:336184..336772 | TCONS_00019170-exon-sc0000320-1510915933:336184..336772 | Clytia hemisphaerica | exon |
| TCONS_00019170-exon-sc0000320-1575043694:336184..336772 | TCONS_00019170-exon-sc0000320-1575043694:336184..336772 | Clytia hemisphaerica | exon |
| TCONS_00019170-exon-sc0000320-1491911889:336840..337141 | TCONS_00019170-exon-sc0000320-1491911889:336840..337141 | Clytia hemisphaerica | exon |
| TCONS_00019170-exon-sc0000320-1510915933:336840..337141 | TCONS_00019170-exon-sc0000320-1510915933:336840..337141 | Clytia hemisphaerica | exon |
| TCONS_00019170-exon-sc0000320-1575043694:336840..337141 | TCONS_00019170-exon-sc0000320-1575043694:336840..337141 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000320 | supercontig | sc0000320:336184..337141 + |
Blast
The following BLAST results are available for this feature:
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