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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019157 ID=TCONS_00019157|Name=TCONS_00019157|organism=Clytia hemisphaerica|type=transcript|length=2138bp attagatttaaaagaaaaatagaaagcAGGAAATAAAACTTCATAACCAA GATGACGAACGTGACGATTCCAAACAAGCTTTTCTACAAAGAAGCCATGG ACCAAGTTCATCTTTACAATTCCAAACTATTGTTGGATCGTCGATTGCGA ATGCCTTACATTGATAGTCAAACTGGCCTTGCACAACAAGATTGTCATTT ATGGGTTAGTCGCGTGCAACGTTCCTCCCCCATCCGTGAGGGTCAAGTGT ACAGCTATCCATCACGTAGATGGCGCGTCAGAAAGCGGCCCGACTTTATC GGCACCAAAAGCAAGATAACGGAAAAACAAAAGAGTGAGGATGACGGCCA agGAACGACAACCGAGACAACGGACAGCACTTTGGAAACGATAGAAGATT CGAAGACCGCTTTTGATACCGCCAGTCAATCTTCAACTACCACGGGCGGT GGTGGCGGTGGAAATAGCAGTATTTATGAATATTATGACGACATGGCCTT CGATTCTGAGTTTGATTCCGATGAGGAATTTGGTAgcagaaagaagaaaa agaagggcGGCAAAGTGGCTAAAGGCAAGAAAAATGCCATGGCTTTGAAA TACGCAACCAGTATCAAGGTGATGTCGAAAGAAGAATTGAACCTTCTTTC TTCTGAAGATCGAAAGAAGCCTTACGACTGTCAAATTTGCGGAAAGCGTT ACAAGAACTCGCAAGGTTTGCGGTATCACTATGAACATCACAATCACGAT TTAGAAGAGCAGCAGCCCGCCCCTCCACCTGCCCCACTCTCATCCCTTCC ACCACCCATCGATCCGATCCCTCCGCCTATGCCCGCCCTGACCGTTCAAC CGGTCGAAGCACCACCTCCCAATCATATTGCAGGAGCCAAACGGGCGAAA GGAACGCCACCAAGTCATTTCTGTGACACCTGTCTGGGCAACGTGAATGC GAACAGACAAGGATCTGCGGAAAGATTAATTTGTTGCGCAGACTGTGGNC CTGTCTGGGCAACGTGAATGCGAACAGACAAGGATCAGCGGAAAGATTAA TTTGTTGCGCAGACTGTGGCCGTTCAGCTCATCCATCGTGTTTGACATTC ACGGAGAAGATGACAGAGCAAGTGCAGAAATACCGATGGCAATGTATCGA ATGTAAATCGTGCTGTTTGTGCGGCACCTCTGACAATGATGATCAGTTGT TGTTTTGCGATGATTGTGATAGAGGCTACCATCTTTATTGTCTCAACCCT CCCATGGGTGAACCTCCTGAAGGCCACTGGCAATGTCAACTTTGCAACTC ACGCATCCAAGGTTTGGATATTTCCCGTGTTGCAGTCTTGCCGGAACACA TGGATGCCGCCCTTCATGCCACGCCTTCCAAATGAACAAACAAGAAGACA GGTATCTtcatttggcccaaattttaggGTTGTTCTTTTATCATGTTAGC GACGACATAATGACATCACAGCCTCTGTTCAATTCAGACACATGGAAAAG TTGCTCGTCTTTTCTTTGTTATGGCATTTGTGAGACAAGATTTTGAATGG CCAACATAGGAAGCTCGTCGATAGTGAATAATGGCAgatatcaaaaaagt ttcaatgattattttcaatgaaaacagTTAGTAACACATTTACCTTGTTG CTAGAGACTTACCCGATGGGATATCTCTATTCATGGAAGATGAAACATTC AGCTGTTTTCACAGATCATACGAGCAGAAACATTACAGATATGTGTGATG GTGTttctattttatcttttttttatttatgaaacatttttaatggaata attttaaattacttGTGGTGTTTTTATATTTCACACTTTGAAATTGATGA TTTGATATTAAGCTCCCTGATGGTTTGGGAACTTTTGTTTTGAGATACTG AGTCTTATTTTTCTAACGAAACAACATGATACCGTGCTTAGCTTAGACTA TCAGTGCCTTTCAGTCATCCTTTCTTTCTTCCTTCCTCCAAATATCTCCC TTATTGACGGTTGTCATGGATGGTTTCGTTGCTACTTGTTGAACAAAATC TCGCAATTCTCGTATCAACCGAATGAAAACTTTACTTTGGCGCTGTGCTT TATCTTTAAAAAACGTTTGATTTGTTTTAAAAGGAAAC Run BLAST on NCBI transcript from alignment at sc0000320:19404..25507+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019157 ID=TCONS_00019157|Name=TCONS_00019157|organism=Clytia hemisphaerica|type=transcript|length=6104bp|location=Sequence derived from alignment at sc0000320:19404..25507+ (Clytia hemisphaerica) attagatttaaaagaaaaatagaaagcAGGAAATAAAACTTCATAACCAA
GATGACGAACGTGACGATTCCAAACAAGCTTTTCTACAAAGAAGCCATGG
ACCAAGTTCATCTTTACAATTCCAAACTATTGTTGGATCGTCGATTGCGA
ATGCCTTACATTGATAGTCAAACTGgtaaatgaaattttaatgGCATTGT
TCATCTTaagcaaaactatttttttgaGCAATAAAGTGATTAGAATAGTC
ACGGTTTGCACAAATCTACGAGGCAGTGTTTTTAATTGTGACTAGTTGCC
CAAGTATAGAAAATCTGACGCAATAGCCCATCCACTATTATAATATGTGT
ATTCGCTTTTTATAACAATAGTTAGAAATTTATGTCTAATTTTTACTACA
CTTTGAATTCTTTGATTTCgattttggaaagaaaagatttttgattgTTG
AAGTCACGCAGACGGTTGTATTGACCAAAATACTTGTTTCTCTTCCCTCT
CTCTGAATGTGTAGCATTATTTCTTTTCAGGCCTTGCACAACAAGATTGT
CATTTATGGGTTAGTCGCGTGCAACGTTCCTCCCCCATCCGTGAGGGTCA
AGTGTACAGCTATCCATCACGTAGATGGCGCGTCAGAAAGCGGCCCGACT
TTATCGGCACCAAAAGCAAGATAACGGAAAAACAAAAGAGTGAGGATGAC
GGCCAaggtatttttctttgtttttacctCGAAAAAGTGAAGAACTGATG
TTCTTAAGCATGCAAAGCTAACTCTCTCAAGTTGGACGGATTTTTTGGGA
AATAGTCTATTATATTTCCTTCCGTGAGTTTATCCGTGATGATTGTGGTG
TGAGTATCAATGACCCACATCAAGTTGTGGTACCATTAGGGAACTACTTT
TGGAGAGCAGCAATTAGGATTTTGTTTGGTCGGGATAGAAAATTACCCAC
ATGTATGGATACCTCTGCCCACATCACTTTTcgagttttgaaacttttta
gaTAAGTTTGTTTGTTGGCCCCTTCGAGTGATACagtgttttattatata
tttctAAGGAACGACAACCGAGACAACGGACAGCACTTTGGAAACGATAG
AAGATTCGAAGACCGCTTTTGATACCGCCAGTCAATCTTCAACTACCACG
GGCGGTGGTGGCGGTGGAAATAGCAGTATTTATGAATATTATGACGACAT
GGCCTTCGATTCTGAGTTTGATTCCGATGAGGAATTTGGTAgcagaaaga
agaaaaagaagggcGGCAAAGTGGCTAAAGTAAGAAAAATAACACGCTAT
TGTAATGTTCTAACGCCCACTACAAAGTATTTAGAGTAAAAGCAATTAGT
TcttctttttaattaaaatattttcttacaggCATTAAAGTGCATAATGA
TGTTTTTAAAGAAGATGTTTTGAAATTGCATTCGCTCTCTATTCTACTTG
CTATTCCTTGGTCTGTTTGTTCGTCAACGGTTGAAGAtaacattttcatt
tgaaaccaTGATTAATTCTCTTCACCCTGTTTTCAAATTCTTTAGCCTTT
CTCGTCCTTTTCTTATTCTCACATCATTTTTCGTCGTAAGTTTTTCATTA
GGGCCATGGCAAACCAGTctaacatttcatccaacatgactttccaatgt
tggatgaaatgcttgatggaaaaacttgcgttggatgaagcgaaaatcaa
ggctggggcaaaccgatccaacattttATCCGACATGACTtgggaaaaaa
tttaaaattcaaaaaataaagaaaaaagtactaCCAAACCAATGcaacac
gaaaaattacacaattcaatgaaagagcttctttgatctcgccgcaaatg
ttgaatgaaatgtttgatggcgaattttcatttctttccaaaaatttgaa
ttgacgcaaaccggtccaacatttcatccaacataaAAAAAAGGCATGTT
agatgaaatgttggattggTTTGCTCCATCCTTTACATCACAATTAATGC
AGCAAACCTTTCCCCTTATCTTGCCTTGAATTCACCGAcaatcatttttt
gaattttaacacaaaaacaatcttgaatttctcaaatgaaagaccctTTA
CTAGGATCCTACCCATTAGTGAGATAAAGTTCgcataaaatgtttttatt
ttaacgTTCACTATACAGGGCAAGAAAAATGCCATGGCTTTGAAATACGC
AACCAGTATCAAGGTGATGTCGAAAGAAGAATTGAACCTTCTTTCTTCTG
AAGATCGAAAGAAGCCTTACGACTGTCAAAGTAAGTTTAAAGATCACAGT
TTCTGTCATAATACCAAagataatagacgatatcggcttaacgtgaaaac
tcagatttgacccccgaaaatttcccaaaaagcattgtggggaattctcg
gtggtcaaatctgagttttcatgtgaagCCGATATTGTCTATTGGCTGTT
TGGGCTCCCCTTTCATGTTTTTAAACAGTAGCGACAAGTAATAATACACG
GTTTTTTTCGCTTATTTCTCTATAGTTTGCGGAAAGCGTTACAAGAACTC
GNGAGGAATTTGGTAgcagaaagaagaaaaagaagggcGGCAAAGTGGCT
AAAGTAAGAAAAATAACACGCTATTGTAATGTTCTAACGCCCACTACAAA
GTATTTAGAGTAAAAGCAATTAGTTCTTCTTTTtaagtaaaatattttct
taaaggCATTAAAGTGCATAACGATGTTTTTAAAGAAGATGTTTTGAAAT
TGCATTCGTTCTCTATTATACTTACTATTCCTTGGTCTGTTTGTTCGTCA
ACGGTTGAAGATAACATTTTAATTTGAAACCATGATTAATTCTCTTCACC
CTGTTTTCAAATTCTTTAGCCTTTCTCGTCCTGTTCCTATTCTCACATCA
TTTTCCGTCGTAAGTTTTTCATTAGAGCCAGGGCAAACCAGTCTAACATT
TCCTCCAACATGACTttccaatgttggatgaaatgcttgatggaaaaact
tgcgttgGATGAAGCGAAAATCAAGGCTGGGGCGAActgatccaacattt
catccgacatgacttggaaaaaaattgaaaattcaaaaaataacgaaaaa
agtactaccaaaccaatccaacacgaaaaattacacaattcaatgaaaga
gcttctttgatctcgccgcaaatgttgaatgaaatgtttgatggcgaatt
ttcatttttttccaaaaatttgaattgccgcaaaccggtccaacatttca
tccaacataaAAAAGGCATGTtagatgaaatgttggaccggtTTGCTCCG
GCCTTTACATCACAATTAATACAGCAAACCTTTCCCCTTATCTTGCCTTG
AATTCACCGACaaccattttttgaattttaaccaCAAAACAATCTTGAAt
ttctcaaatgaaagaccctTTACTGCTTTACTGATCCTACCCATTAGTGA
GATAAAGCTCGCATAAAACGTTTTTATTTTAACGTTCACTATACAGGGCA
AGAAAAATGCTATGGCTTTGAAATACGCAACCAGTATCAAGGTGATGTCG
AAAGAAGAATTGAACCTTCTTTCTTCTGAAGATCGAAAGAAGCCTTACGA
CTGTCAAAGTAAGTTTAAGAGCAAAGTTACATACAGATCACTGTTTCTGT
CATAATACCAAagataatagacgatatcggcttaacgtgaaaactcagat
ttgacccccgaaAATTGCCCACAATGGTTTGCGCGGAAAAAATTTCACGG
TGAAATTATTTCCGCACagagcattgtggggaattctcgggggtcaaatc
taAGTTTTCAGgtgaagccgatatcgtctattggctGTTTGGGCtccatt
ttcatgtttttaaacaGTAGCGACAAGTAATAATACACGGTTTTTTTCGC
TTATTTCTCTATAGTTTGCGGAAAGCGTTACAAGAACTCGCAAGGTTTGC
GGTATCACTATGAACATCACAATCACGATTTAGAAGAGCAGCAGCCCGCC
CCTCCACCTGCCCCACTCTCATCCCTTCCACCACCCATCGATCCGATCCC
TCCGCCTATGCCCGCCCTGACCGTTCAACCGGTCGAAGCACCACCTCCCA
ATCATATTGCAGGAGCCAAACGGGCGAAAGGAACGCCACCAAGTCATTTC
TGTGACACCTGTCTGGGCAACGTGAATGCGAACAGACAAGGATCTGCGGA
AAGATTAATTTGTTGCGCAGACTGTGGNCCTGTCTGGGCAACGTGAATGC
GAACAGACAAGGATCAGCGGAAAGATTAATTTGTTGCGCAGACTGTGGCC
GTTCAGGTAAGGGACGTTTTCTCTTCAAAATACTATAAAAAATGTGAAAC
AATGGTTATTACATTACACTAATATGGAATGAGTTTTGCTCAGTAAATAA
ATGTACTTTTTGCTGTCACATAGCTCATCCATCGTGTTTGACATTCACGG
AGAAGATGACAGAGCAAGTGCAGAAATACCGATGGCAATGTATCGAATGT
AAATCGTGCTGTTTGTGCGGCACCTCTGACAATGATGTAAGTAACCCTTG
CAATGAGAGTTCACAATGTTAATTCGTTCTACCACGCTGAAAATGTTGAT
CAAAATTATGTTTTCAAATCAAGATGGTTATGAATGGTGCGAATGACACA
ATATTCAGTTAGTAATAGACTTTGAGTcaaatttaaaagtttattttata
CCCTGTGGCGGACACTTTGTTCCCACTGTTTCTTTTATGAAACCAGTTTT
TACTTGTGTGTTCTTTTTCAGGATCAGTTGTTGTTTTGCGATGATTGTGA
TAGAGGCTACCATCTTTATTGTCTCAACCCTCCCATGGGTGAACCTCCTG
AAGGTATCAAAACCTCTTCTTTTTTAGTTAAGGTCAAGAaaaaaatgagc
gattgacaaCGATTGAATTGTTGTtcattttgatattatttttttgtcgA
CGGTATTTTGAGATTTATTTATGATGTATTTTTCGGTTTAGGATTTGTTT
TATTTCTCGAGTTAATTTGATTGAATGCCCTGTTAAAATTCTAGAGAACT
AACTTTTCTTTAAGATTGTTTGAAGTTTCTGTTGTCATACTTTTACCAAc
gtaaaaatcataatttttagGGAGCTCCGagccaaaatgaactttttttt
taacgGAGGCTTGTGGTGGCACTGTCACGTCGAATCATTTTGGTATAATG
TTCTTCTTCGCCACTCATCCTTGTTCTTCTTTTATTAGGCCACTGGCAAT
GTCAACTTTGCAACTCACGCATCCAAGGTTTGGATATTTCCCGTGTTGCA
GTCTTGCCGGAACACATGGATGCCGCCCTTCATGCCACGCCTTCCAAATG
AACAAACAAGAAGACAGGTATCTtcatttggcccaaattttaggGTTGTT
CTTTTATCATGTTAGCGACGACATAATGACATCACAGCCTCTGTTCAATT
CAGACACATGGAAAAGTTGCTCGTCTTTTCTTTGTTATGGCATTTGTGAG
ACAAGATTTTGAATGGCCAACATAGGAAGCTCGTCGATAGTGAATAATGG
CAgatatcaaaaaagtttcaatgattattttcaatgaaaacagTTAGTAA
CACATTTACCTTGTTGCTAGAGACTTACCCGATGGGATATCTCTATTCAT
GGAAGATGAAACATTCAGCTGTTTTCACAGATCATACGAGCAGAAACATT
ACAGATATGTGTGATGGTGTttctattttatcttttttttatttatgaaa
catttttaatggaataattttaaattacttGTGGTGTTTTTATATTTCAC
ACTTTGAAATTGATGATTTGATATTAAGCTCCCTGATGGTTTGGGAACTT
TTGTTTTGAGATACTGAGTCTTATTTTTCTAACGAAACAACATGATACCG
TGCTTAGCTTAGACTATCAGTGCCTTTCAGTCATCCTTTCTTTCTTCCTT
CCTCCAAATATCTCCCTTATTGACGGTTGTCATGGATGGTTTCGTTGCTA
CTTGTTGAACAAAATCTCGCAATTCTCGTATCAACCGAATGAAAACTTTA
CTTTGGCGCTGTGCTTTATCTTTAAAAAACGTTTGATTTGTTTTAAAAGG
AAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00019157-exon-sc0000320-1491911889:19404..19578 | TCONS_00019157-exon-sc0000320-1491911889:19404..19578 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1510915933:19404..19578 | TCONS_00019157-exon-sc0000320-1510915933:19404..19578 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1575043694:19404..19578 | TCONS_00019157-exon-sc0000320-1575043694:19404..19578 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1491911889:19934..20110 | TCONS_00019157-exon-sc0000320-1491911889:19934..20110 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1510915933:19934..20110 | TCONS_00019157-exon-sc0000320-1510915933:19934..20110 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1575043694:19934..20110 | TCONS_00019157-exon-sc0000320-1575043694:19934..20110 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1491911889:20462..20682 | TCONS_00019157-exon-sc0000320-1491911889:20462..20682 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1510915933:20462..20682 | TCONS_00019157-exon-sc0000320-1510915933:20462..20682 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1575043694:20462..20682 | TCONS_00019157-exon-sc0000320-1575043694:20462..20682 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1491911889:21572..21683 | TCONS_00019157-exon-sc0000320-1491911889:21572..21683 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1510915933:21572..21683 | TCONS_00019157-exon-sc0000320-1510915933:21572..21683 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1575043694:21572..21683 | TCONS_00019157-exon-sc0000320-1575043694:21572..21683 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1491911889:23318..23709 | TCONS_00019157-exon-sc0000320-1491911889:23318..23709 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1510915933:23318..23709 | TCONS_00019157-exon-sc0000320-1510915933:23318..23709 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1575043694:23318..23709 | TCONS_00019157-exon-sc0000320-1575043694:23318..23709 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1491911889:23827..23939 | TCONS_00019157-exon-sc0000320-1491911889:23827..23939 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1510915933:23827..23939 | TCONS_00019157-exon-sc0000320-1510915933:23827..23939 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1575043694:23827..23939 | TCONS_00019157-exon-sc0000320-1575043694:23827..23939 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1491911889:24175..24256 | TCONS_00019157-exon-sc0000320-1491911889:24175..24256 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1510915933:24175..24256 | TCONS_00019157-exon-sc0000320-1510915933:24175..24256 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1575043694:24175..24256 | TCONS_00019157-exon-sc0000320-1575043694:24175..24256 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1491911889:24642..25507 | TCONS_00019157-exon-sc0000320-1491911889:24642..25507 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1510915933:24642..25507 | TCONS_00019157-exon-sc0000320-1510915933:24642..25507 | Clytia hemisphaerica | exon |
TCONS_00019157-exon-sc0000320-1575043694:24642..25507 | TCONS_00019157-exon-sc0000320-1575043694:24642..25507 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000320 | supercontig | sc0000320:19404..25507 + |
Blast
BLAST of TCONS_00019157 vs. Swiss-Prot (Human)
Match: DPF3 (Zinc finger protein DPF3 OS=Homo sapiens GN=DPF3 PE=1 SV=3) HSP 1 Score: 158.303 bits (399), Expect = 2.912e-42 Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 3
Query: 1002 CLGNVNANRQ-GSAERLICCADCGRSAHPSCLTFTEKMTEQVQKYRWQCIECKSCCLCGTSDNDDQLLFCDDCDRGYHLYCLNPPMGEPPEGHWQCQLC 1295
CLG N N++ G E L+ CADCGRS HP+CL FT MTE V+ Y+WQCIECKSC LCGTS+NDDQLLFCDDCDRGYH+YCLNPP+ EPPEG W C LC
Sbjct: 265 CLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLC 363 HSP 2 Score: 82.0333 bits (201), Expect = 1.447e-16 Identity = 31/69 (44.93%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 82 FYKEAMDQVHLYNSKLLLDRRLRMPYIDSQTGLAQQDCHLWVSRVQRSSPIREGQVYSYPSRRWRVRKR 288
FYKEA++ YNS+L +R +R+P++DSQTG+AQ +C++W+ + R + GQ+Y+YP+R WR ++R
Sbjct: 16 FYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRR 84
The following BLAST results are available for this feature:
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