TCONS_00019102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019102
Unique NameTCONS_00019102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019102 ID=TCONS_00019102|Name=TCONS_00019102|organism=Clytia hemisphaerica|type=transcript|length=508bp
ATGATCttgaatttacaaaaagattAAGTGGGAATAAGCACAAACGGTTA
TTGGTGCCATGCCAATGTGGCAAAGCGCATGAGTACCTTTACCAGGGGTT
TATAAACTTTGAAACAGTCAAAACTGTGACAGAGGAAGATTTTCACCAAA
AATACAAACACCTCCCTTTGGACACGCTAGAGAAAAAATaataTACGTAT
GGTACGGTGATTTTTGGAACAGTACGAAAACCGATGTATGTTTAATTTGA
TGGAATGGATTTGCCCGAAAATATCATTTGTCAAATTGATATCTCAAAAA
CTTCACATTCTTACTTACTTTATTACCTGAATCTTAAACAATTTTAATCA
TAATTTGTTCGTACTAAGAATGAGTTATATGTATTCTCATGCAAagttta
tacttctagactatgtATGTTTAAATATTTGTATATTTTGTCGATCTTTT
TATTTCTTACATCGTTTTCTATCGAATTCTTTATAATgaaatgaaatctt
ttttttta
Run BLAST on NCBI

transcript from alignment at sc0000319:298504..300067+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019102 ID=TCONS_00019102|Name=TCONS_00019102|organism=Clytia hemisphaerica|type=transcript|length=1564bp|location=Sequence derived from alignment at sc0000319:298504..300067+ (Clytia hemisphaerica)
ATGATCttgaatttacaaaaagattAAGTGGGAATAAGGTAACAATTGTT
TTATTATGAAAATCATTTGgggttaaaatttgaaatctttatatccctat
tttcaaattatttgcgAAATATTATCAAGTACGTGAAACGTGAAACCATT
TTTCTAATAGGGGTATTAAAGTGTCAAAAAGATGTGCCGTGTTTCTATCT
TTAACCATAACTTTCCAAGGTtgatatcgttggaaagatatttaaatGCG
CTGAATTTTCCACTCATttatctttcaaaatttgttcaagaaagtgaaac
aaaatgaaaaagaaaaaaacttcttgtagaataacACCCCTCGGTTTGAT
TGATAAATCGGAATATGATTTattataaaataatttattcTCATTTATCA
CCTGCGATTTCAGCAGCACAAACGGTTATTGGTGCCATGCCAATGTGGCA
AAGCGCATGAGTACCTTTACCAGGGTAAGATAGTCTTATTTATGGATCCC
AATCTCGTCCATGTGTGCTTTAGTGCTATTTAATGGACGCAGAGAATACA
CAGGTATTTTCAATACAATACGTTCCTCAGCAATGTAGATTATTGCTTGA
CAGTTCATATATgtcatatatttttttatgggTAGCATTATCAATACAAA
TTCTAAGAATTTCTCTCCAACTACTACGTACTTCATTTGGAAATTATAGG
TTTCATACATAgagtttttctttgcttatatttcaaattcattaaaaacT
CTTGTTTGTAGAGGGTTTATAAACTTTGAAACAGTCAAAACTGTGACAGA
GGAAGATTTTCACCAAAGTAAGTCCAAACCACATTGTTCCTGTAAATTTG
AACTGTCAGAAAAATGCATAGTACTGCAGTCGACTTTTTGGAACAATAAT
AACCTGTGTGATAGCTTGCTTATCAGTAATCGGATGTAAAGGATTTTAGT
TGTATAGAATTCAGATCAAAATATTGGGAATATATAATCATCTCTTTCTT
ATTTCAGAATACAAACACCTCCCTTTGGACACGCTAGAGAAAAAATGTAA
GTAAACAATCGTTTTATTTAAATGGGCTCTACCCCGAAAGCTAAGATTTC
ACCTAATTAAAAACCAATCagaaatttttctcttctttttgttAGGACAT
ATCCGTCAACCTAGGCACCAAAGACGTTTTTTGAAAACTCGTGAAGTAAT
GTGTTCTTCTTATATTTATCTTATTATACTtttcaaattcttcagaataT
ACGTATGGTACGGTGATTTTTGGAACAGTACGAAAACCGATGTATGTTTA
ATTTGATGGAATGGATTTGCCCGAAAATATCATTTGTCAAATTGATATCT
CAAAAACTTCACATTCTTACTTACTTTATTACCTGAATCTTAAACAATTT
TAATCATAATTTGTTCGTACTAAGAATGAGTTATATGTATTCTCATGCAA
agtttatacttctagactatgtATGTTTAAATATTTGTATATTTTGTCGA
TCTTTTTATTTCTTACATCGTTTTCTATCGAATTCTTTATAATgaaatga
aatcttttttttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010712XLOC_010712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019102-exon-sc0000319-1491911889:298504..298541TCONS_00019102-exon-sc0000319-1491911889:298504..298541Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1510915933:298504..298541TCONS_00019102-exon-sc0000319-1510915933:298504..298541Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1575043694:298504..298541TCONS_00019102-exon-sc0000319-1575043694:298504..298541Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1491911889:298920..298977TCONS_00019102-exon-sc0000319-1491911889:298920..298977Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1510915933:298920..298977TCONS_00019102-exon-sc0000319-1510915933:298920..298977Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1575043694:298920..298977TCONS_00019102-exon-sc0000319-1575043694:298920..298977Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1491911889:299267..299320TCONS_00019102-exon-sc0000319-1491911889:299267..299320Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1510915933:299267..299320TCONS_00019102-exon-sc0000319-1510915933:299267..299320Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1575043694:299267..299320TCONS_00019102-exon-sc0000319-1575043694:299267..299320Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1491911889:299511..299549TCONS_00019102-exon-sc0000319-1491911889:299511..299549Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1510915933:299511..299549TCONS_00019102-exon-sc0000319-1510915933:299511..299549Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1575043694:299511..299549TCONS_00019102-exon-sc0000319-1575043694:299511..299549Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1491911889:299749..300067TCONS_00019102-exon-sc0000319-1491911889:299749..300067Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1510915933:299749..300067TCONS_00019102-exon-sc0000319-1510915933:299749..300067Clytia hemisphaericaexon
TCONS_00019102-exon-sc0000319-1575043694:299749..300067TCONS_00019102-exon-sc0000319-1575043694:299749..300067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:298504..300067 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.82692	0	1.84681	2.21804	0	2.93365	0	0	0.758574	2.30953	0	0	0	0	0.459118	2.20128e-07	0	0	4.18776e-08	0	0	0	0	0	0	0	5.39361e-05	3.33335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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