TCONS_00019078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019078
Unique NameTCONS_00019078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019078 ID=TCONS_00019078|Name=TCONS_00019078|organism=Clytia hemisphaerica|type=transcript|length=599bp
CCTAAAAAAAACTAGTACCATGTACtaaaaaagggtggtggtcccaagtt
ttttttaaattaccgAAAATCAGGTTATTACCCCTTGGTTTACTACACTG
AACATGTAACCCCCCCTGataaaatagagaaaaattatCAACCCCAGGGC
TGCCTAGGGTACTAACTGGTTTCCAATAGTGATTACTTTGAATGTCGGTC
ACTCTGGACTGCTAAACAGAGTAGAAAAGGGGGTGGTGGCACCTGCCAAT
AGTCGAATGCACTTAGTACTTTGGGGGTAATAAGTGCAAATAGGGGTGGT
GTCGACCTGCCAATAATGAAATGCACTTTGTACTTTGGGGTACCAAGTGC
GAATAGGGGTGGTGTCAACCTGTCAATAGTCAAAAGCACTTAATACTTTT
GGGTACTAACTGCTGAGGGATGGTGGGTGTActtccaaattttcaatttt
gtagtTAGTCATCATGATTTCTGGTACCAACTGCATGACTCCCCCTGCAC
CATTTCTCTATCAAAATTTGTTATCTTGAGAAAACATGTATCATTCCATC
TAGCGAATTTAATACCATTTAATCTTCTAAATCTTTCTTAGTATTTCAG
Run BLAST on NCBI

transcript from alignment at sc0000317:305975..306573

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019078 ID=TCONS_00019078|Name=TCONS_00019078|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0000317:305975..306573 (Clytia hemisphaerica)
CTGAAATACTAAGAAAGATTTAGAAGATTAAATGGTATTAAATTCGCTAG
ATGGAATGATACATGTTTTCTCAAGATAACAAATTTTGATAGAGAAATGG
TGCAGGGGGAGTCATGCAGTTGGTACCAGAAATCATGATGACTAactaca
aaattgaaaatttggaagTACACCCACCATCCCTCAGCAGTTAGTACCCA
AAAGTATTAAGTGCTTTTGACTATTGACAGGTTGACACCACCCCTATTCG
CACTTGGTACCCCAAAGTACAAAGTGCATTTCATTATTGGCAGGTCGACA
CCACCCCTATTTGCACTTATTACCCCCAAAGTACTAAGTGCATTCGACTA
TTGGCAGGTGCCACCACCCCCTTTTCTACTCTGTTTAGCAGTCCAGAGTG
ACCGACATTCAAAGTAATCACTATTGGAAACCAGTTAGTACCCTAGGCAG
CCCTGGGGTTGataatttttctctattttatCAGGGGGGGTTACATGTTC
AGTGTAGTAAACCAAGGGGTAATAACCTGATTTTcggtaatttaaaaaaa
acttgggaccaccacccttttttaGTACATGGTACTAGTTTTTTTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010693XLOC_010693Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019078-exon-sc0000317-1491911889:305975..306573TCONS_00019078-exon-sc0000317-1491911889:305975..306573Clytia hemisphaericaexon
TCONS_00019078-exon-sc0000317-1510915933:305975..306573TCONS_00019078-exon-sc0000317-1510915933:305975..306573Clytia hemisphaericaexon
TCONS_00019078-exon-sc0000317-1575043694:305975..306573TCONS_00019078-exon-sc0000317-1575043694:305975..306573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:305975..306573 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186277	0.266126	0.514996	0.240861	0.613381	0.193881	0.467818	0.656948	0.311682	0.379811	0.184327	0.302923	0.244821	0.12566	0.173503	0.110867	0.13658	0.13999	0	0	0.178773	0	0	0	0.888695	0.697337	0	0	0.100968	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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