TCONS_00019072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019072
Unique NameTCONS_00019072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019072 ID=TCONS_00019072|Name=TCONS_00019072|organism=Clytia hemisphaerica|type=transcript|length=294bp
gcaaataaacaaaaaagaaattacaaGTCAAAATTGTGTGATTTTAAAAT
TACTCATTTTGCCAACACAAGCTTTCATCCAATCTGTAGCACCCCATACT
TTCACATTATAAAACTGTTCAGCTTGCGTATTATCGGCCGTGTGGACTTC
TTCACCGTTTATAATTATCGAATATTTATAAACACCTCCCCTCTTGTATC
GTTGATGAAGCTCCATTTCATAGATTGTTTTCTGTGTCAAGCCATTATGA
AAATAGGAGTACTGCGATCTTCCACTGACAGAGTTTGAGATCTC
Run BLAST on NCBI

transcript from alignment at sc0000317:139089..139382

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019072 ID=TCONS_00019072|Name=TCONS_00019072|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at sc0000317:139089..139382 (Clytia hemisphaerica)
GAGATCTCAAACTCTGTCAGTGGAAGATCGCAGTACTCCTATTTTCATAA
TGGCTTGACACAGAAAACAATCTATGAAATGGAGCTTCATCAACGATACA
AGAGGGGAGGTGTTTATAAATATTCGATAATTATAAACGGTGAAGAAGTC
CACACGGCCGATAATACGCAAGCTGAACAGTTTTATAATGTGAAAGTATG
GGGTGCTACAGATTGGATGAAAGCTTGTGTTGGCAAAATGAGTAATTTTA
AAATCACACAATTTTGACttgtaatttcttttttgtttatttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010687XLOC_010687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019072-exon-sc0000317-1491911889:139089..139382TCONS_00019072-exon-sc0000317-1491911889:139089..139382Clytia hemisphaericaexon
TCONS_00019072-exon-sc0000317-1510915933:139089..139382TCONS_00019072-exon-sc0000317-1510915933:139089..139382Clytia hemisphaericaexon
TCONS_00019072-exon-sc0000317-1575043694:139089..139382TCONS_00019072-exon-sc0000317-1575043694:139089..139382Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:139089..139382 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.416273	0.405932	0	0	0.561368	0	0.535185	0	0.701571	0.434504	0.42174	0.554471	1.93795	2.5876	0.945494	0.253665	1.56247	1.28119	6.63761	11.5763	1.20743	1.17788	0	2.16963	1.3408	0.797756	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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