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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019062 ID=TCONS_00019062|Name=TCONS_00019062|organism=Clytia hemisphaerica|type=transcript|length=687bp
TCAATAATGCTAAAGAAGCCCTGCAATGATCATAAAATCGAAAAACGTAT
TGCGAGCCCAGTGGAGAAAACCGAAACATCAATTCTCTGCAATTTCAAAG
ACGTGTGGAGAAAACTTATCACAGAATGAACATCGTCTCATCAGAAGACA
AAGAAATAAATGctACTCAATAAACGGAAAGTGGCAGCAACTGCTGTTGC
AGAAAATCTAACAGAGGAGGAGAGGAATATAATCAACAAACTGTTGCCAG
AATGCATGACCGATGAGGAGAAAGAAGATGCAGGTGAAGGTGAAGAAGAA
CTATATAAGACTCGACCTGTGCCGTGGCTGACAGATGAAGTAGTCGCTGT
GAAAAGAAAATTGGACGAGTCTTGTAATCAAAAAAAGAACTCATTGAAGC
GCGCAAGAATTCCGGGGCCGCCAACCGAAAGACAGCCGTCGCACAAAGTG
CCACGATAATTCTTAATCGACtattaattttgatattttgatatttattt
ttctactaacattttgtaaaaatatataaCCTACAAGctgtaaaatattt
tctaaagaatttttaatcgactaatttttatttattattttgatatttat
ttttctactaatatttgtaaaaatattcaaCCTACAATCTGTAATAATAC
TTTCTAAAGTAATTCAAGAAATTAACTAttactaaaa Run BLAST on NCBI protein sequence of TCONS_00019062-protein >TCONS_00019062-protein ID=TCONS_00019062-protein|Name=TCONS_00019062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MLLNKRKVAATAVAENLTEEERNIINKLLPECMTDEEKEDAGEGEEELYK
TRPVPWLTDEVVAVKRKLDESCNQKKNSLKRARIPGPPTERQPSHKVPR Run BLAST on NCBI transcript from alignment at sc0000317:406278..407576- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019062 ID=TCONS_00019062|Name=TCONS_00019062|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at sc0000317:406278..407576- (Clytia hemisphaerica)
TCAATAATGCTAAAGAAGCCCTGCAATGATCATGTAAGTACACTTTTTTA
GTTATTTTTGGAATAACCTGTCTAAAACACATAATTTCTTTCTTTCTTCA
AGTTATTTTCAATTTAAATAAAGATAAAGGGCAATCAATCTGTTTGATAA
TCTTGTTTTTAAGAAGTAGAGTATAATTTTATCATTTTCTCTCGACAGAA
AATCGAAAAACGTATTGCGAGCCCAGTGGAGAAAACCGAAACATCAATTC
TCTGCAATTTCAAAGACGTGTGGAGAAAACTTATCACAGAATGAACATCG
TCTCATCAGAAGACAAAGAAATAAATGGTAATAAGAAAAGGAAGTAAATA
TAATAACAAATTTGTTTCATCCAAGCTAGCTGAAAGTCCTGCCGGGTCTA
TGAGAAAGGGGTGTCAAAAATTCTAGTTCTTCTTCTTTGCGAGTGTTTAT
ATAAAATATGCTGTGTCCAGGAGCTATAAAATTCTTCATTTTTAATTATT
TTCTGGACGGTACATGATCAAATATTTTTGATTTTATAGGATTACTAAAT
AAAATTGACATAGAATAGCATAATATTAAGACAAATTAGCATAAAATATC
ATGAAAGAATTTGGAAATTTTGGCTGAGTGGCCTGCATGAACATTTCTTT
CGTTTTTCTTAAAATGGTTGGGATTTGTAATTGTAATGAAGTTTTTTCTC
TCAGAGCACTAATTCAATTCAATTTTAATAATTCAAGTGACTCTTTAATA
ATAACCTATTTTTCTTATTTTTAGCTACTCAATAAACGGAAAGTGGCAGC
AACTGCTGTTGCAGAAAATCTAACAGAGGAGGAGAGGAATATAATCAACA
AACTGTTGCCAGAATGCATGACCGATGAGGAGAAAGAAGATGCAGGTGAA
GGTGAAGAAGAACTATATAAGACTCGACCTGTGCCGTGGCTGACAGATGA
AGTAGTCGCTGTGAAAAGAAAATTGGACGAGTCTTGTAATCAAAAAAAGA
ACTCATTGAAGCGCGCAAGAATTCCGGGGCCGCCAACCGAAAGACAGCCG
TCGCACAAAGTGCCACGATAATTCTTAATCGACTATTAATTTTGATATTT
TGATATTTATTTTTCTACTAACATTTTGTAAAAATATATAACCTACAAGC
TGTAAAATATTTTCTAAAGAATTTTTAATCGACTAATTTTTATTTATTAT
TTTGATATTTATTTTTCTACTAATATTTGTAAAAATATTCAACCTACAAT
CTGTAATAATACTTTCTAAAGTAATTCAAGAAATTAACTATTACTAAAA Coding sequence (CDS) from alignment at sc0000317:406278..407576- >TCONS_00019062 ID=TCONS_00019062|Name=TCONS_00019062|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000317:406278..407576- (Clytia hemisphaerica)
CTACTCAATAAACGGAAAGTGGCAGCAACTGCTGTTGCAGAAAATCTAAC
AGAGGAGGAGAGGAATATAATCAACAAACTGTTGCCAGAATGCATGACCG
ATGAGGAGAAAGAAGATGCAGGTGAAGGTGAAGAAGAACTATATAAGACT
CGACCTGTGCCGTGGCTGACAGATGAAGTAGTCGCTGTGAAAAGAAAATT
GGACGAGTCTTGTAATCAAAAAAAGAACTCATTGAAGCGCGCAAGAATTC
CGGGGCCGCCAACCGAAAGACAGCCGTCGCACAAAGTGCCACGATAAATG
CTACTCAATAAACGGAAAGTGGCAGCAACTGCTGTTGCAGAAAATCTAAC
AGAGGAGGAGAGGAATATAATCAACAAACTGTTGCCAGAATGCATGACCG
ATGAGGAGAAAGAAGATGCAGGTGAAGGTGAAGAAGAACTATATAAGACT
CGACCTGTGCCGTGGCTGACAGATGAAGTAGTCGCTGTGAAAAGAAAATT
GGACGAGTCTTGTAATCAAAAAAAGAACTCATTGAAGCGCGCAAGAATTC
CGGGGCCGCCAACCGAAAGACAGCCGTCGCACAAAGTGCCACGATAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019062-exon-sc0000317-1575043694:407544..407576 | TCONS_00019062-exon-sc0000317-1575043694:407544..407576 | Clytia hemisphaerica | exon |
| TCONS_00019062-exon-sc0000317-1575043694:407250..407378 | TCONS_00019062-exon-sc0000317-1575043694:407250..407378 | Clytia hemisphaerica | exon |
| TCONS_00019062-exon-sc0000317-1575043694:406278..406802 | TCONS_00019062-exon-sc0000317-1575043694:406278..406802 | Clytia hemisphaerica | exon |
| TCONS_00019062-exon-sc0000317-1510915933:407544..407576 | TCONS_00019062-exon-sc0000317-1510915933:407544..407576 | Clytia hemisphaerica | exon |
| TCONS_00019062-exon-sc0000317-1510915933:407250..407378 | TCONS_00019062-exon-sc0000317-1510915933:407250..407378 | Clytia hemisphaerica | exon |
| TCONS_00019062-exon-sc0000317-1510915933:406278..406802 | TCONS_00019062-exon-sc0000317-1510915933:406278..406802 | Clytia hemisphaerica | exon |
| TCONS_00019062-exon-sc0000317-1491911889:407544..407576 | TCONS_00019062-exon-sc0000317-1491911889:407544..407576 | Clytia hemisphaerica | exon |
| TCONS_00019062-exon-sc0000317-1491911889:407250..407378 | TCONS_00019062-exon-sc0000317-1491911889:407250..407378 | Clytia hemisphaerica | exon |
| TCONS_00019062-exon-sc0000317-1491911889:406278..406802 | TCONS_00019062-exon-sc0000317-1491911889:406278..406802 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000317 | supercontig | sc0000317:406278..407576 - |
Blast
The following BLAST results are available for this feature:
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