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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019025 ID=TCONS_00019025|Name=TCONS_00019025|organism=Clytia hemisphaerica|type=transcript|length=768bp
TTGGTTGTGCAGTCAATATCAAGGCCCTCAGACCGCATTCTCCAGTTTCT
TGCCCGGGGTGCACGGGCTTGGTCATGTGgatttgttttaaaaacaaacg
aTGTTCCATCAATAAACATACCTATCTATTCTCTTAAAAATTCTTTGCTT
TTGCACGTGTTCTCACGAGCAAACTTGAGACGTTTGTGCAAGTCCGTGGC
TCTTATCAAGCCTTTTTCCCGCGACTGTAAATACTTATAACCGGCTTTGT
TTAGGACTCTTCTAACAGTATCATGCGACAAATGCATAACTCCGGCTTCC
ACTTGTAGTCGCTTTACAGTGAATGTTCCAATATCTCGTCAAAGCTGGGG
CACCTTCCGGAGAATCTGACGTCTATCATTGGCGGTAACTTTGGACGGTC
TTCCTTTATTTTCATGGCGCTTGTCGGTTTGTTCCTCCAACGAGCGATTA
ACATGGCGATATATTGTAGCGTATACAATGGGGAAATTGTTTTCTGATCT
GCGGTATTGAAAGTTTTGACTCTTGGTACAAAAGTCTCATATAAAGTGAT
TCCCTTTCAGTTATTTTGTTACTTGTGTTAATatactctttttttttcta
atgtGAAAAGAATATAACATTATAACAaatgtaatcgtcagccgtgcaaa
attactcgaatctgattggtttagaggagtgcgattaatcgttaattgca
ctattaccactttttgcactcttcggctaaaaaaaactatgatttactaa
tgattatttactgacaaT Run BLAST on NCBI transcript from alignment at sc0000317:364078..368969+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019025 ID=TCONS_00019025|Name=TCONS_00019025|organism=Clytia hemisphaerica|type=transcript|length=4892bp|location=Sequence derived from alignment at sc0000317:364078..368969+ (Clytia hemisphaerica)
TTGGTTGTGCAGTCAATATCAAGGCCCTCAGACCGCATTCTCCAGTTTCT
TGCCCGGGGTGCACGGGCTTGGTCATGTGgatttgttttaaaaacaaacg
aTGTTCCATCAATAAACATACCTATCTATTCTCTTAAAAATTCTTTGCTT
TTGCACGTGTTCTCACGAGCAAACTTGAGACATTTGCGCAAGTCCGTGGC
CTTTTTTCCGCAACTGTGAATACTTATAACCGGCTTTGTTCAGCCAGGAC
TCTTCTAACAGTATCAGGCGACAAATACATCCTCCGGCCTCCACTTGTAG
TCACTTTACAGTGAATGTTTCAATATCTCGTCAAAGCTGGGGCACCTTCC
GGAGAATCTGACGTCTATCATGGGCGGTAACTTTGGACGGTCTTCCTTTA
TTTTCATGGCGCTTGTCGGTTTGGACCTCCAACGAGCGATTAACATGGCG
ATATATTGTAGCGCGGTTATACTTGGGGAATTGTTTTCTGGTCTGCGGTA
TTAAAAGTTTTGGCTCTTGGTATAAAAGTCTCATATAAAGTGATTCCCTT
TCAGTTACTTTGTTAGTTGTGTTGatactcttttttttcttttttttctt
tttttgtgaaaaaaataaaacattataACAAATGAATTATTTTAACAAAc
attataccttatcggggaaaaaatgtcggagttttatttagtcgggtttt
tttttcgtcggggaaagatttcgtcacctagaggcattttggTCACTTTT
CCcctaccaaaatttcaaattcgtcactttcaccggactaaattgtccaa
aagaaatggtttccttcactgcTAGAATTCGATTAAGGCAACAATTAAAG
CGtgtataatattttgaaaaatagagtAATTGAACACGGTTATCGCAACC
ATATATCTTAAAGTTACCCAATCACGTAAGAATACAAAGATCTATTTTGC
AACCAGAAACTCtgtttattttgttgatttgaattatttttcagatAGTT
TTTGCAATTATTTTAGTTATTGCTGCATGCATACCAATATATTTGTTTTG
tataatttcagaaattttataaataaattatttgtatattttgaaatatt
tttgtataatGATGACATAAAAAATTGTAAACTTctcattaaattcaaaa
ttcttttcaaattacTTTTGAAATCAATTATTGTACCTTAAAGTCGAGAT
TGTATCACCTTTTAAAGCTAAACATGTAGATGTTCCAGATGGTAATAAAG
TTAacgtctcaaaagtatgtggacacttcacttttttgacaatttcttaG
CATCATTGCGTTCTAAATTCGTGTATTtcttttgctctaaaagagttgaC
AATTTGAGAGAAATGCACTGTATAGTAAtgaatttcaccaatttttcgtt
gcactgtaagggtgcaattttaaaagtcaTTTCGCCGCACATTCCATCAT
TTATATTAGTAAACCCCCGGGATTCCAGCACGAAATCTAACACAAAACAA
TAAATACACCGACCTGATATAAGGATATAAGACATGTTTCTGatatcatg
gaggtataaagaaagacaggagaagtatgctattgtaaccaagctcgccc
tacgattaaaaaagttacgatgtatgcatgctcNAATACAGAGTGATATT
ATAATCCAGATAAGAATGTTACTATAAGTCTTGTTTAATAGTGTTGATAA
TTTcaagatatgctttcatttcaatttccaaactattttctcaaaaaaat
ttaattttattatcaggtaggtccaaacaGCCCTGATAACGATGatagaa
ttttgtaaaaattgaaagattttctttgcatttttaaattaaagttaCCC
AATCAAAGAAGTTTTTTCGGACAAAATTTGGTTAGCGAGCAGATTTATCG
GAACGTTCGGCTAAAGATAAAACAGGACAACTTAACCGCTAATAATAATG
AAGACTTACCAGGAAGACACATCGCCCGGTTGGCCTTCATCTCATCGTTT
ATTCTGTATATTTCCAGTCCTAATTTCTCTTCGACTCTTCCGTGGCTGTG
AAATGTTATATAACGAGGATCTGTGTTCTCTTTCACAGCAAACGCATGAA
CCGTGTAGTTGGAATGTGATTCCATGAGACcaaatttctagaaaaatgAT
AAGTTTTTGCTTTTTGGTAATTTAGCACAGTTAGGATTTTTTCTCCAAGA
TTTCAGGAAAAAGGTGGGAGTGGAAAATGCTTACAATCTTTAAATTCCGA
CTCGAACAAGTCTTTGATCGGATCACCGAATATCTGGCTTTGTTCCCCAA
AGCCTGGTGTTGCGAAGTGGGTAAAGTTGTAaccgtttttatttttcttc
gcaaacaGTGTGATGCTGTGCATCTCTTGGTTCTGATGGAGTCCTGTAGA
ACAATTAAACTATACTATATAACATATCTcggattttcgcgaaaatttaa
atttactttaccGAGAAATCTTGAAGTAATGATCAAAAGGAGAATAGATA
ATAAAGTAGTACATTTGTCTGCCAATCATGCTTAACATACGTTATTCGGG
TCATTCCCGGTGGTACACAATCAATTGGTCGCTTCTTTTTCTTGACGAAC
CGGTGATGACCATTCTTACACAGACACCCTATGGTTGTTGAATGTGGCCA
ATACGTCGTACGTAGGACATTTCTAAGAGTATGAAAGGGAAGTTTTagag
gaaaaaaaatttaaacaaaatatttgtATGCAGCTATTTTCAAAACTTAT
TGGTATTCATTTTcatatttcatttaattttcgagaaaaagaGGCCCCAC
Agagtacaaaatgaaaaattatcaatgtaattgtaaaaatattcaaacat
tttcatcttcNaaatgaaaaattatcaatataattgtaaaaatattcgaa
cattttcatcttcattcagcATGTTTCCTACTGTCTATTGCTTGTTGATA
TTTATTGTATTTCCCTTTTAGAGAATTGTGTAAAACTTACTACTGTGTCG
GAGGAGGTACGTCGGTGTTTGAATGCATTTCTCAccttttttgccctttt
tgttGAGACAGTCTTGAACAAAGTATCTTAGATCCGTCCTGTCCATGGGT
ACCTGTTACTCACATGTTAGCTCTACCAATGAAGCCAGTGCCTTCTCTTC
TTCATGATCAAGAACGGTCGGACGTCCGTCGTCTTCTGAAACTGTTGCGG
TGAGCTCGCCTTTCGTGTTTGATTTTTCGGTCATTGTACCGACTTTCCTG
CTTCTAAAAATTAATTGACAATTTTGACATACCGATGCAATCATCAAAGA
CTCTGCGTGTAAATGCATGGAATGATTTCATATCATTCAAGGTTACCATT
CAATCTTCTGACGATTGGTTGATTGAATTAGTCCATTGGTTGAaccttga
aaaataattttagtttatTAGTTTCTTTAGCTTTGTCTATAAAGCCTTTA
TAGCATAAAGATTTAGTCTTTGCAGTGATAGTTTACAGTACCTCGTCCGT
AAAAGTAATGACGAAAAACAACTAAATTTATTGCATCCTCTGGCATTTTA
ACTAGAAATCCTGTCATGAAAAGTTATCCCATCAGGTTCCTTTATCAACG
GCAGGGGCATGTTTTGCTGATTTTCTacattgttgttattttctaaTTGC
TGGTCCTCAAAATcaagatgttctccatcatttATAAACATCTAAAGCTT
CCTCATCTTTATCAACTATCTCCTCATGTTTATCAACTATCTCCTCATCT
TTATCAACTATCTCCTCATCGACATCTAAGTTTATTCTTTCTAATATATC
Gtgtgtttcattttattttaagagagggttaacagtttttttttgctcat
ctATTCTCGACTATTCTTCTATGAATACATGATGACATGGCTTGATGTAT
TGAGATAAATTTTTTGTGTCTGCTGTCTTGTGTTGTTACAAATGAGGGTG
TAATCGTGGAAAGATGATGCGTAGAACAACAATCTTAGCAAAATATCATG
AGACACCTTGCAAATATAGCAAATTTAAGATTCCTCCTTCCCTAAAAACA
ATGTTGAGTGCAGTAACAGCTTGATTCCATAAACAACATTGACTGACTTT
CCTCCGTTACCAGACTCTCTTCCTTTGGTTGTGCAGTCAATATCAAAGCC
CTCAGACCGCATTCTCCAGTTTCTTGCCCCGGATGCACGGGCTTGGTCAT
GTGgatttgttttaaaaacaaacgaTGTTCCATCAATAAACATACCTATC
TATTCTCTTAAAAATTCTTTGCTTTTGCGTATGTTTTCACGAGCAAACTT
GAGACGTTTGTGCAAGTCCGTGGCTCTTATCAAGCCTTTTTCCCGCGACT
GTAAATACTTATAACCGGCTTTGTTTAGGACTCTTCTAACAGTATCATGC
GACAAATGCATAACTCCGGCTTCCACTTGTAGTCGCTTTACAGTGAATGT
TCCAATATCTCGTCAAAGCTGGGGCACCTTCCGGAGAATCTGACGTCTAT
CATTGGCGGTAACTTTGGACGGTCTTCCTTTATTTTCATGGCGCTTGTCG
GTTTGTTCCTCCAACGAGCGATTAACATGGCGATATATTGTAGCGTATAC
AATGGGGAAATTGTTTTCTGATCTGCGGTATTGAAAGTTTTGACTCTTGG
TACAAAAGTCTCATATAAAGTGATTCCCTTTCAGTTATTTTGTTACTTGT
GTTAATatactctttttttttctaatgtGAAAAGAATATAACATTATAAC
Aaatgtaatcgtcagccgtgcaaaattactcgaatctgattggtttagag
gagtgcgattaatcgttaattgcactattaccactttttgcactcttcgg
ctaaaaaaaactatgatttactaatgattatttactgacaaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019025-exon-sc0000317-1491911889:364078..364258 | TCONS_00019025-exon-sc0000317-1491911889:364078..364258 | Clytia hemisphaerica | exon |
| TCONS_00019025-exon-sc0000317-1510915933:364078..364258 | TCONS_00019025-exon-sc0000317-1510915933:364078..364258 | Clytia hemisphaerica | exon |
| TCONS_00019025-exon-sc0000317-1575043694:364078..364258 | TCONS_00019025-exon-sc0000317-1575043694:364078..364258 | Clytia hemisphaerica | exon |
| TCONS_00019025-exon-sc0000317-1491911889:368383..368969 | TCONS_00019025-exon-sc0000317-1491911889:368383..368969 | Clytia hemisphaerica | exon |
| TCONS_00019025-exon-sc0000317-1510915933:368383..368969 | TCONS_00019025-exon-sc0000317-1510915933:368383..368969 | Clytia hemisphaerica | exon |
| TCONS_00019025-exon-sc0000317-1575043694:368383..368969 | TCONS_00019025-exon-sc0000317-1575043694:368383..368969 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000317 | supercontig | sc0000317:364078..368969 + |
Blast
The following BLAST results are available for this feature:
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