TCONS_00019021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019021
Unique NameTCONS_00019021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2627

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019021 ID=TCONS_00019021|Name=TCONS_00019021|organism=Clytia hemisphaerica|type=transcript|length=2627bp
TGACTTTGGAAGCTAGAGTAACACGGACACAAATTTAGTAAATCAAACGT
AACAAAAGTAACGGAGGCAAAGGATTATGGGAAAATCAGAAGACAAAGGA
TTGTTGAATCGTGGCGGAGGAGAGACGATCAATTTGAGAGAAACAAGTCC
TGAAGGAAGTTTGTGTAAAGATGGCGGCGAAAGTTCGACCTCCTCACTCA
ATGATAATGCTCCTTGGTATATACGATTCTGGAGACGCGAGAAGCTGATG
ATTTTCATCATCATTGGTGTTTGTTTGGGATTTCTCGTTGGTATCTCTTG
TAATAAACCCATTCAAAACCTCGATCAACCAATCCGAAAAAATGTTCTCC
TCATCTTAGGATTCCCAGGTGAACTTTTGATGCGaatgttgaaaatgttg
atccTCCCTTTAATTGTCTCCAGCTTGATTGTCGGATTGGCGGAGCTTGA
CCAAAGGGCGTCTGGACGTTTGGGAAAAAGAGCGGTTTTGTATTACATGG
GAACGACAATGTGTGCTGTCATCTTGGGTATCATTCTGGTAGTAGCTATA
TATCCTGGTGGAAATAAACAAGAGGCTGAAGGTGAGAAAGAAGATAAACG
AGTTCGTCCGTTAGATTCGTTCCTCGATCTAATTCGCAACATGTTTCCGG
ACAATCTTGTTAAAGCTTGTATAGCACAACTGGTGACAGGAGTCAAGTTT
GAGAAACATGATGAAAGGACGACTGTTTGGAGTAGTAATGAGACATTGGC
TGACCAAATGAATTGGAATCATTGGGAAGTCAACCAAACAGCTTTACAAA
ATCAAACGAATTCAGAATGGAAATATTTGACTTACCAGAGTGTACTAAAT
GGAACAAACGTAACAATGGTTAAAGAATGGCGTGAAGTCAAGATGCCTGA
TAAACCATCAGACAAAGGAAGCACCAATGTTCTCGGTCTCGTAGTTTTCT
CCATCGTCGTTGGTCTAATGTTAGGGAAGATGGGAAAGAAAGGACGCGTC
TTCGTTGATTGGATGATTGTGTTAAATGATATCGTTATGGAGTTGGTTGG
TTGGGTCATGTGGTATTCACCTATTGGTATATGGAGTTTGATTTCAGCTA
AATTTGCATCCATGAATGATATTGAAGGAACATTTGAGAAACTGGCTCTC
TATATGGTGACTGTCATTGTTGGTTTGATTATCCATTCATTCTTGGTGTT
GCCTGCTATATTCGCTGTTGTCACAAGAAAGAATCCGTTCAGATTCGCTA
CTGGTCTGATCAAAGCATTACTAACGGCCTTCGGTACAAGCTCCAGTTCG
GCAACTCTGCCAGTCACGTTTTCCTGCCTCGAAGATAATCTCCGCGTGGA
TAAGCGTGTCACACGGTTCGTGCTCCCTATCGGTGCCACTATCAACATGG
ATGGAACCGCCTTGTATGAAGCGGTCGGAGCAATCTTCATTGCTCAAAAC
TCAGGTCTTGATTTAGATTTTGGTCAATATGTTGCCGTTAGTTTAACAGC
AACTCTAGCCTCAATTGGAGCTGCCGGAATACCACAGGCTGGCTTGGTGA
CCATGTTGATTGTATTGCAGACGATTGGTCTCCCAGAAGATGCAGTGACC
CTCATCTTGGCAGTGGATTGGTTCTTGGATCGAGTACGAACGACTGTTAA
TGTTTTAGGTGATGCTTATGGAGCTGGTATCGTTCACCACTTGTCACAAC
GAGAACTCCAACAAATGGATGAAGATCAAAAAGCTTTGGATGAAGTGCAC
CGTGTTGAAGaaggatttgaaaattttactggaAAACATGATGAAAATCC
ACCTAATATGAATATGTATAATGGCCTTACTGCTCTGTAAGAATTTTGAG
AATTAATGCTCCCTCTTAGAGCTCTTTTAAAAATACTACAAAGCCAAAGA
GTACTTCCCAATTCATAAAGTCGTTTCAACAGACTTACTGCTCTATAAAA
ATTTAGTACCAATATTCCTTGTTAAAAAAATACTACCAATCCAAATAGTA
CTAGGCTCTTTCTAATTCATAAAGACGCTTCAATGGCAATGATACAGCTC
TGTAAAGATTTTGAGTATTAATGTTGCTTATTAGAACCCTCCGAGATCTT
CCAAACTCAGTCGCTTAAATGACAACAATTCAACCCGTGAAAACCCTTTT
CGAGGAAGGCGATAGACTTTCCTTAAGTAAATTGGGGTGTATAAGCGCGG
TTTTTAGTCATACAGTAATGGTAGCGGGTTAATATTTCGGTAATTAATTA
AAACTAAAGTAATTAATGTAATTAATTACCTCAGCGGAGTGATCAAACAT
TCGAAAGGGTAACTAACTCCCTTATACTGTAAATATTAGTTTTAACTTAT
AATTTTAatgcgaaaatgaaaatttatgatttttactaattgttataaat
taaaaaaagagatCTTTTGTATATCATGATTCTTTATATGAGTGTAGTAA
TGATTGCGCtttagattttttcttcttgtaaATACTTTTTTCTGTATCTT
Taatatcaaaaaaagaattaataaacttcagttttaaaaaattaaaaaaa
agctttcatctcctattcatgatatgcaccactgcaatgacttcacgaaa
ttatgcaacttttctgtttttgttcca
Run BLAST on NCBI

transcript from alignment at sc0000317:284050..292641+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019021 ID=TCONS_00019021|Name=TCONS_00019021|organism=Clytia hemisphaerica|type=transcript|length=8592bp|location=Sequence derived from alignment at sc0000317:284050..292641+ (Clytia hemisphaerica)
TGACTTTGGAAGCTAGAGTAACACGGACACAAATTTAGGTAAGTTCCAAG
ATTTGATAACGTACGCGTAGAGCTTATGACCTTAATGACAGTGAATTAAT
ttctctcgctaattcgaataCGAGCGGTAATATTCGAATTGTACAGTTTT
TCAAatatctttataagaatcaaaagcctaaaattttttgttaaatttca
ggtagaatttttttgtttaaccaTGTGACATTTTctggattttgaatttt
taaattatagtttgttcttgtttcctttttgttttttttcgcacGTCCGA
GGCAATACTTGAAGTTagttacacccccttctcataggTAGGATTTTTTG
AGCCAGTGGGTATAAAAATAACAAACCGAAACTcgatattctcatatttt
ttgtgagtggggatttcaattctttttcaagtcagaaaattcagctgGGA
TGGGAAAattagtaaatattttgcaagcgaggattggtttatttgattat
tttcagttgggATAAAATTTGAGGATTATTTTCCATCGGGGGcgatattt
tggcaaatttttccagtggatctgtgagaagggggtatttAGTTCGAagt
atagaaagatttgaataatagaaaCTCGAATAAACGAGGGTATTAAGACT
TAATCAAATCAACTCGAGAAATTATCTTTCCTTTCTTGTCATCTAAGTCT
CGTAGCAAAATTGAACAGTCCTAGACCACAAAAACGAAGTTGTTTTTGAT
CAAGAAATTTGCCTGTTATCTGTAAAGGAAGAGGACATACCCAGGAAGGG
GAAAAAAGAGAGACTTTTTCACTGTAACACGTTAAAAATAAAGTCGACAA
CAAGTATAAGGTGAAGAATTAAAAAGTAGCgaattcaacttcaaaaaaac
atCTGCTTTTACTTTagtgaaaaatcatcaaattctCAGATTCCCAATTC
ATAGCCTATAAGTTTATGAATAGATTTAAATAAGAAACAGCGTGAGCGAT
AGCAAAACCTGTTTAATATTGTGAACTTGGTGTGAAGAACAAATTGGCTA
CACATACTCCATATAGCTCAGTTTTTAGTGAGAATTTCTCATTCAAGATA
AGGGTATTCCATGTAAAGTCAGTCCAAGACGGTTTTTACAGTCTGATGTA
CACATGAAGGGTTCCAGAACtgtaaaaaaaatcgaatttagcgctgtcct
cacttactaaaataaaaataagtttaaaaagctaaaagaataacaaaatt
tgattggctgcaTTTTCAACTGTTAACTCGTAGCCGTAGTATATGGCAAG
GGTAATACAAGTTTATACAGGCTTtaaggccttactcttggtatATAGGT
GGTGGTTTCACGCTGGAAACAAAGGAAGGTATGGTTTAGCCTAGGGTATT
CCAATCGGCCTAGAGTGGGTacataaaaagttaaaagatttttattgaAT
TGTTGATAgattattaaaaaagaaaatcaccCAAAGGATAGCCAGACAAT
TTATTCAGGGAAGTAACCTGGAACCCGAGAAAATCCTGCCActcagattt
ttccaaaaaagagaaataaatcATTGAAATCGACGAAACAGCAAAAGCTT
TTTAGACAATCTAAGAatggcaaacgatagcccttgatccaataagcata
aatatagtataatatcaGGGATGACCTAAGAAATTTTTATAggaaatgag
ctagaatgctaagcagcCCCAGACCTGACCTGAAAATtcaagttgcttat
aaaaaatgggTATTTGACGTAGAAAATCTTGATATGAAGGAAAAGGGGTT
GCACTGAAAAACCAAACTAAAACCAAATCACGACGAGAATTAAATGAAAG
ATTGAGTTGAATTTAGAGTTCAAAAGAGGAGTACGATAGCTGCTGCTTAT
CATGCCAAATTCTTTTCAACTAACATTAATAAGTACAGTTAAGCTGATTT
AGAATGTTGCAACTTGTATAATAAAATTGTGTTAAATGTTATGATATTCT
GAGAAGAAACTTAACGGTTTTTAAAATCTTCTCGTACAAGCGTCTATTTT
CTTTCAActattttatgcaaaaaaatagtCACCTGCAATTGCCTGTAATT
TTAAATAAACGGTCACGATTTCGCTTCTTTTCCAGTAAATCAAACGTAAC
AAAAGTAACGGAGGCAAAGGATTATGGGAAAATCAGAAGACAAAGGATTG
TTGAATCGTGGCGGAGGAGAGACGATCAATTTGAGAGAAACAAGTCCTGA
AGGAAGTTTGTGTAAAGATGGCGGCGAAAGTTCGACCTCCTCACTCAATG
ATAATGCTCCTTGGTAAGATGACGTCAATTTAACAAAGTTTTCCTCCCCT
TTGTGCTAGTAACGTGAAAAGCACTGGGttcgaatctcaatcaaatcCTC
AGCAGTGGTCCCCTTTTAAATCTAGTTTGTTGCGTTTTTTCGTGTTGGCA
GCTTTTTTATGGCCCTTTTCTGGATGAGCTTGTGAAAAGGGTGCTTTCAA
AACGTAGACTGCTTGCATCCTTTTGGATTCGTGTGGTATGTAGAGGGATG
CGATTCAAACtaatttaaattgttttaaatcataaatttcagtgcttctt
ggaaaaattttcgaatGCAAAAAAATATCTCCACAAAACTCCTTGCGTAA
CTTTTTGACTATAGGTACGCTGACAATATTGAAATATGAACTGAAACATG
TGATCAAATTTAACCCCAATTTTAAAATCCAATCTATATTTTCAGGTATA
TACGATTCTGGAGACGCGAGAAGCTGATGATTTTCATCATCATTGGTGTT
TGTTTGGGATTTCTCGTTGGTATCTCTTGTAATAAACCCATTCAAAACCT
CGATCAACCAATCCGAAAAAATGTTCTCCTCATCTTAGGATTCCCAGGTA
AGCGAGACATACAGTATTAATGGTTTAGTGGTATAGTAATCATTGTTGAA
AATTATGTCCAATTTTTGAGTGCATCTTCTTTCTTTATTTGAAGGCAATG
CacgtttttaataagaacaaactatataagagtaTGAGgcatggccaaaa
tattaagaacatcttaatgcTTCGAGgaatctaaaacacccaatttctaa
ggaaaatggacaaaaatattcaaaaaatggcgaaaataagaacatgttaa
gaacattttttaaggcttaggactaaaaaagttaaaaccatTTGAGTGCT
TCAAAATATTTGGATgtacaaaaaaaacaagatcAAAAAGGAATTATTCA
GTATAGAAACTAAAACAAATACACAAAATGGAAGAATTATTTTCTGAAAG
GTGAATCACGAAGAATAAACAGAGAAGAGAAGAGAAGTAGAGGAACACAA
CACACCTCTATCGAGCCCTTCACCTAAGCAACTGACGTCAAACATGGAGA
GAGTAAAATCACTGGGGAATAAAATGAATGACTCATTCAATCTAGAAACT
TAATATCATCATCTAAGGGAGTTTCTAAGGTCTCTTGATGTTTCATAgag
aaaaaaagaggaaaaacgGAAAAAGTGTTTTCGATTTTTGTTTCCTTATC
TCGTGGTTCAATCTAAATTATTTATTGAATGTCTATTTCGGTACTACTAT
AGACCCCATTCATGGAATTTAacattgcataaattatgctaCTATTGTAG
TATTTAACATAAATTATTCATGCAAATCATGTGATTCTTTTGAGCTACAG
ATAGATGAATTCATTTAAATCCGCCAGAATTATCGGAAATAAAActccaa
aaaaatattaaatcatATATAAAATCGTCTAGACAACAAAATTAAAATGA
TCATacatctttttataagaacaaattatataagaatataaggcttcgat
ggctaaaatataatgaacaagttaagaacatttttaagtctTCGCGAACT
CTAAGACAGCtaatttctaaggaaaatggacaaaaatactaaaaaaatgg
cgaaaataagaacatgttaaaagctcaaaaagttttaagaacacccgaag
gcttcaaaacttttggatgttcttataaaaagacgtgtAGTATACTTTGC
TAACTACAACGATTTATATGTcctaaaagaattgaaatctcaAATCtact
ttgaaaataatgaaagttCAGCAGTAGGGACAACTAAAACTAAATCTCAG
AAATAAAGCAATAACTCAAGATTCGAAACATCTCATGTAGGAAGAATCCT
AAAAAACATCTACCACCAAAcacttgaaaaacaaaaatactcTTTACGAA
ACTTACTGCACAATTTTGGACTGATAGTTTCCTCTGGTGAATTTCCATTG
CATGTTCATGAATATTGGCTCTTTCCAGGTCCCCTTGGTTTGTTACATAC
TTCAAAATCACTGAAATATACGAAAAAGTGTTCGTTCTACTACAACCCCT
ACAATAATTTGAAAAGACTTTTGAATTgtcaacaaaaaagtttttcatgt
tATGTTAAGTAAAGTAATTTTCGCCATTATGGAATCAAACGCTCGATTTG
CATAAGGGATCGCCTCAgcaaattcgaacgtttgcttccataatggcgaa
taatgcagaaaaaaatacattttagtgggaattaaatttggcggattttg
ggtacccaaatccgccaaattttctttaggccaaatttcttcttttaatg
tacacgttttttataagaacaaactacataagaacataaggcttggatgg
ccaaaatgttaagaacaagttaagaacattttatggctttgtggtctcaa
aaacaccctttttcttaggaaaatggtcaaaaatactcacaaaatggtca
aaataagagcatgctaaaaacatttttaggcttaaaacccaaaaagtttt
taagaacatccgaaggcttcaaaaattatggatgttcttataaaaaaaac
tactttttttgtAATACTTTTAATCAGAAAACTTAGTATGATATTATATT
GTACCTTATTGTCTTTTATTTCCCAGGTGAACTTTTGATGCGaatgttga
aaatgttgatccTCCCTTTAATTGTCTCCAGCTTGATTGTCGGATTGGCG
GAGCTTGACCAAAGGGCGTCTGGACGTTTGGGAAAAAGAGCGGTTTTGTA
TTACATGGGAACGACAATGTGTGCTGTCATCTTGGGTATCATTCTGGTAG
TAGCTATATATCCTGGTGGAAATAAACAAGAGGTATGtatcttttccttt
tttaagaagaaatatttatttttcagctGAAAATTGGCTAATataaaacc
taagaacaaattcaGAACAATCCTAAGCCCAAGAAGTTTTTAATTACGAT
AGCTCAGtgtattaagaacatcgtaagagcAGATAAGcctgagaatttaa
aaaatattaagaagagccaagcctgagccaaaatttactggttctcataa
aaaaagcgCGTAATGAACATTATCCCAATAACATTCTTTTCGGCTTAATA
GGCTGAAGGTGAGAAAGAAGATAAACGAGTTCGTCCGTTAGATTCGTTCC
TCGATCTAATTCGCAACATGTTTCCGGACAATCTTGTTAAAGCTTGTATA
GCACAACTGGTGACAGGAGTCAAGTTTGAGAAACATGATGAAAGGACGAC
TGTTTGGAGTAGTAATGAGACATTGGCTGACCAAATGAATTGGAATCATT
GGGAAGTCAACCAAACAGCTTTACAAAATCAAACGAATTCAGAATGGAAA
TATTTGACTTACCAGAGTGTACTGTGagtagattttcaaattcaaatcca
TATGTTAAATCCTTCATTTATCCAAATTTGAGTGACCtgaaaaatccaat
aaaaaatAGCTTATGCAAGATCAGTACCCAGCTTCAGTATGTGTATACta
gtacaatcaaggtcataatatttgagaaaaaagggaaattccccaggaag
ttttgaaaccacaatcgatttgtaagtgctctaaagtaggttcgaagggt
agattTATAACGCTAAACATGGAATCTGaggatttaaaagttcaaaaata
gtccaataaggctcagaatatagactggaagtctgccaaaccatcccaaa
ttgaaatattcgattaaatagatttgatagctcaaaatcgattttttcgc
cggaactttaaatcttgaaaaacgttaaaataaccggaattctcaatata
tttcgaccatgattgtagattgGCTTTGAGTTAATGAAATGAACAGAAAA
GTCTTACCCTTTTCCCTCTTTGATTCTAACATAGAAATGGAACAAACGTA
ACAATGGTTAAAGAATGGCGTGAAGTCAAGATGCCTGATAAACCATCAGA
CAAAGGAAGCACCAATGTTCTCGGTCTCGTAGTTTTCTCCATCGTCGTTG
GTCTAATGTTAGGGAAGATGGGAAAGAAAGGACGCGTCTTCGTTGATTGG
ATGATTGTGTTAAATGATATCGTTATGGAGTTGGTTGGTTGGGTCATGTG
GTATTCACCTATTGGTATATGGAGTTTGATTTCAGCTAAATTTGCATCCA
TGAATGATATTGAAGGAACATTTGAGAAACTGGCTCTCTATATGGTGACT
GTCATTGTTGGTTTGATTATCCATTCATTCTTGGTGTTGCCTGCTATATT
CGCTGTTGTCACAAGAAAGAATCCGTTCAGATTCGCTACTGGTCTGATCA
AAGCATTACTAACGGCCTTCGGTACAAGCTCCAGTTCGGCAACTCTGCCA
GTCACGTTTTCCTGCCTCGAAGATAATCTCCGCGTGGATAAGCGTGTCAC
ACGGTTCGTGCTCCCTATCGGTGCCACTATCAACATGGATGGAACCGCCT
TGTATGAAGCGGTCGGAGCAATCTTCATTGCTCAAAACTCAGGTCTTGAT
TTAGATTTTGGTCAATATGTTGCCGTTAGTTTAACAGCAACTCTAGCCTC
AATTGGAGCTGCCGGAATACCACAGGCTGGCTTGGTGACCATGTTGATTG
TATTGCAGACGATTGGTCTCCCAGAAGATGCAGTGACCCTCATCTTGGCA
GTGGATTGGTTCTTGGATCGAGTACGAACGACTGTTAATGTTTTAGGTAA
GGAaagtttattttattgtttggCTATGATGATAAAAGAACTAAATTACT
TTTTGGCCTGCTATATGCTGCTATTTTAGCTATAATACCAACCTAAATGT
GACAAAAAATACAAGAGTAAATCAATGACAATTTTCCAGGGAAGTGTTCC
TTAACAAATGTTGCAAACAACTTTTTCCTGTAAACTATAGAATTTAGTAA
ACTTAAAGTGTAAAAACAGCAAATAGATAAAACAGAAATGAAATTTCATG
TGATGTTGAAATTCTCGTCATCTTTTACGTGACTGCGTTAGTATAGGGCA
ACAAAAATGTTATGACTTTTATAAAGGAAGCTAAAAATTTAACAATTTCC
TAATTATGCTATTAATTATCAAATAAAACTAAAGGTTTTTTTCATGTTat
gttaagttacgtaactttCGCCATTCtgaaagcaaacgttcgatttgcgt
aagggatTGCTTCTACAGAAGTTAACAAATCATGAATAAACCTTACCATA
TATTTATTCACCAGGTGATGCTTATGGAGCTGGTATCGTTCACCACTTGT
CACAACGAGAACTCCAACAAATGGATGAAGATCAAAAAGCTTTGGATGAA
GTGCACCGTGTTGAAGaaggatttgaaaattttactggaAAACATGATGA
AAATCCACCTAATATGAATATGTATAATGGCCTTACTGCTCTGTAAGAAT
TTTGAGAATTAATGCTCCCTCTTAGAGCTCTTTTAAAAATACTACAAAGC
CAAAGAGTACTTCCCAATTCATAAAGTCGTTTCAACAGACTTACTGCTCT
ATAAAAATTTAGTACCAATATTCCTTGTTAAAAAAATACTACCAATCCAA
ATAGTACTAGGCTCTTTCTAATTCATAAAGACGCTTCAATGGCAATGATA
CAGCTCTGTAAAGATTTTGAGTATTAATGTTGCTTATTAGAACCCTCCGA
GATCTTCCAAACTCAGTCGCTTAAATGACAACAATTCAACCCGTGAAAAC
CCTTTTCGAGGAAGGTGATAGACTTTCCTTAAGTAAATTNTAATTCGACC
CGTGAAAACCTTTTTCGAATTAGGCGATAGACTTTCCTTAAGTAAATTGG
GGTGTATAAGCGCGGTTTTTAGTCATACAGTAATGGTAGCGGGTTAATAT
TTCGGTAATTAATTAAAACTAAAGTAATTAATGTAATTAATTACCTCAGC
GGAGTGATCAAACATTCGAAAGGGTAACTAACTCCCTTATACTGTAAATA
TTAGTTTTAACTTATAATTTTAatgcgaaaatgaaaatttatgattttta
ctaattgttataaattaaaaaaagagatCTTTTGTATATCATGATTCTTT
ATATGAGTGTAGTAATGATTGCGCtttagattttttcttcttgtaaATAC
TTTTTTCTGTATCTTTaatatcaaaaaaagaattaataaacttcagtttt
aaaaaattaaaaaaaagctttcatctcctattcatgatatgcaccactgc
aatgacttcacgaaattatgcaacttttctgtttttgttcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010663XLOC_010663Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019021-exon-sc0000317-1491911889:284050..284087TCONS_00019021-exon-sc0000317-1491911889:284050..284087Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1510915933:284050..284087TCONS_00019021-exon-sc0000317-1510915933:284050..284087Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1575043694:284050..284087TCONS_00019021-exon-sc0000317-1575043694:284050..284087Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1491911889:286185..286362TCONS_00019021-exon-sc0000317-1491911889:286185..286362Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1510915933:286185..286362TCONS_00019021-exon-sc0000317-1510915933:286185..286362Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1575043694:286185..286362TCONS_00019021-exon-sc0000317-1575043694:286185..286362Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1491911889:286795..286946TCONS_00019021-exon-sc0000317-1491911889:286795..286946Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1510915933:286795..286946TCONS_00019021-exon-sc0000317-1510915933:286795..286946Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1575043694:286795..286946TCONS_00019021-exon-sc0000317-1575043694:286795..286946Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1491911889:289026..289231TCONS_00019021-exon-sc0000317-1491911889:289026..289231Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1510915933:289026..289231TCONS_00019021-exon-sc0000317-1510915933:289026..289231Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1575043694:289026..289231TCONS_00019021-exon-sc0000317-1575043694:289026..289231Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1491911889:289501..289772TCONS_00019021-exon-sc0000317-1491911889:289501..289772Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1510915933:289501..289772TCONS_00019021-exon-sc0000317-1510915933:289501..289772Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1575043694:289501..289772TCONS_00019021-exon-sc0000317-1575043694:289501..289772Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1491911889:290284..291095TCONS_00019021-exon-sc0000317-1491911889:290284..291095Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1510915933:290284..291095TCONS_00019021-exon-sc0000317-1510915933:290284..291095Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1575043694:290284..291095TCONS_00019021-exon-sc0000317-1575043694:290284..291095Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1491911889:291614..292113TCONS_00019021-exon-sc0000317-1491911889:291614..292113Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1510915933:291614..292113TCONS_00019021-exon-sc0000317-1510915933:291614..292113Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1575043694:291614..292113TCONS_00019021-exon-sc0000317-1575043694:291614..292113Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1491911889:292173..292641TCONS_00019021-exon-sc0000317-1491911889:292173..292641Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1510915933:292173..292641TCONS_00019021-exon-sc0000317-1510915933:292173..292641Clytia hemisphaericaexon
TCONS_00019021-exon-sc0000317-1575043694:292173..292641TCONS_00019021-exon-sc0000317-1575043694:292173..292641Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:284050..292641 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0293768	0.0286626	0.0832789	0	0.693056	0	0	0.821744	5.33531	3.95758	6.74631	5.02918	13.7052	9.47361	7.03128	8.69017	10.6324	13.243	0.000778818	2.52104e-06	19.4862	20.7195	5.54578	12.8936	9.36607e-06	0.364881	1.58916	0	0.361195	8.08857e-06
Blast
[Close]
BLAST of TCONS_00019021 vs. Swiss-Prot (Human)
Match: EAA1 (Excitatory amino acid transporter 1 OS=Homo sapiens GN=SLC1A3 PE=1 SV=1)

HSP 1 Score: 407.912 bits (1047), Expect = 2.801e-131
Identity = 249/489 (50.92%), Postives = 332/489 (67.89%), Query Frame = 2 
Query:  257 IIIGVCLGFLVGISCNKPIQNLDQPIRKNVLLILGFPGELLMRMLKMXXXXXXXXXXXXXXAELDQRASGRLGKRAVLYYMGTTMCXXXXXXXXXXXXYPG-GNKQEAEGEKEDKRVRPLDSFLDLIRNMFPDNLVKACIAQLVTGVKFEKHDERTTVWSSNETLADQMNWNHWEVNQTALQNQTNSEWKYLTYQSVLNGTNVTMVKEWREVKMPDKPSDKGSTNVLGLVVFSIVVXXXXXXXXXXXRVFVDWMIVLNDIVMELVGWVMWYSPIGIWSLISAKFASMNDIEGTFEKLALYMVTVIVGLIIHSFLVLPAIFAVVTRKNPFRFATGLIKALLTAFGTSSSSATLPVTFSCLEDNLRVDKRVTRFVLPIGATINMDGTALYEAVGAIFIAQNSGLDLDFGQYVAVSLTATLASIGAAGIPQAGLVTMLIVLQTIGLPEDAVTLILAVDWFLDRVRTTVNVLGDAYGAGIVHHLSQRELQQMD 1720
            +I+G  LGF +     +P +   + ++        FPGELLMRML+ML+LPLI+SSL+ G+A LD +ASG++G RAV+YYM TT+ AV++GII+V+ I+PG G K+    E +  RV   D+FLDLIRNMFP NLV+AC  Q  T   +EK   +  +  +NETL   +  N  E  +T                       +T + E    ++   P      N LGLVVFS+  G ++G M ++G+   ++   LN+ +M LV  +MWY+P+GI  LI+ K   M D+     +LA+Y VTVIVGL+IH+ +VLP ++ +VTRKNP+ F  GL++AL+TA GTSSSSATLP+TF CLE+N  VDKRVTRFVLP+GATINMDGTALYEA+ AIFIAQ +  +L+FGQ + +S+TAT ASIGAAGIPQAGLVTM+IVL ++GLP D +TLI+AVDWFLDR+RTT NVLGD+ GAGIV HLS+ EL+  D
Sbjct:   58 VIVGTILGFTL-----RPYRMSYREVK-----YFSFPGELLMRMLQMLVLPLIISSLVTGMAALDSKASGKMGMRAVVYYMTTTIIAVVIGIIIVIIIHPGKGTKENMHREGKIVRVTAADAFLDLIRNMFPPNLVEACFKQFKT--NYEKRSFKVPI-QANETLVGAVINNVSEAMET-----------------------LTRITE----ELVPVPGSVNGVNALGLVVFSMCFGFVIGNMKEQGQALREFFDSLNEAIMRLVAVIMWYAPVGILFLIAGKIVEMEDMGVIGGQLAMYTVTVIVGLLIHAVIVLPLLYFLVTRKNPWVFIGGLLQALITALGTSSSSATLPITFKCLEENNGVDKRVTRFVLPVGATINMDGTALYEALAAIFIAQVNNFELNFGQIITISITATAASIGAAGIPQAGLVTMVIVLTSVGLPTDDITLIIAVDWFLDRLRTTTNVLGDSLGAGIVEHLSRHELKNRD 506
The following BLAST results are available for this feature:
BLAST of TCONS_00019021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EAA12.801e-13150.92Excitatory amino acid transporter 1 OS=Homo sapien... [more]
back to top