TCONS_00018993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018993
Unique NameTCONS_00018993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018993 ID=TCONS_00018993|Name=TCONS_00018993|organism=Clytia hemisphaerica|type=transcript|length=1518bp
AATAGTGCAAGAATGCCCAGAAGGTCATACTGATGGTTCAAGTCAAGGCA
CACCAGTTTATGATAAGCAGTGAAAGCACACACTCGGAAAAtcttaattg
aaaaaaaaaattggtaaacTCCCCTTCATTTCATCGCCATTTTGCCATTT
TGCCGGAAAAAAATCCTAGCGCTGTCGgcgcttttcaaaaaattcctcAA
AGTACAGATCTCAAAGCCATTGCTCAAGACACCGCATTCGATCTCTTCCA
GAACGACGAGGAAAGGCGTCACTTCAGTCTTTTCGCTTGGAAGGTTCGGG
TACAACATGGCTGCCACAAGGAGGTTAAATAAGGAGCTATCTGATATCCG
AAAATCCCAATACAAGCTACTTAGGGATATTAATGTCGATGAAAGCAATA
TACTGAATTGGAAGGGAAAAATATGCACTgACCAACCACCTTACAACCTA
GGGGCTTTCGAAATCGAAATAAATTTCCCAGCTGAATATCCCTTCAAACC
TCCTAAGATCACGTTCAAAACGAAAATCTATCATCCAAACATCGACGAGA
AGGGACAAGTATGCTTGCCCATCATCTCACCTGAAAACTGGAAACCTGCT
ACGAAAACTGACCAAGTCATTCAAGCACTTGTGGCTTTGGTCAACATGCC
AGAACCAGAGCATCCACTGAGAGGTGACCTGGCTGAAGAATACACCAAGA
ATAAAAaggccttttttcaaaaagctgcCGATTTCACCAAGAAACACGCT
TTACAACGACCACCGGAATAAGAATATTACTATCAGAGCCTCGAGAGGAG
AGAGGAacaatttttggttattttttttttcttttttgcgtTACTTCACC
AACTTTGTGAGCAAAGATGAAAGTAATTTATCCGAAAGTCAATTGAATTG
TTGTTGCGTATGATATTTTATCGAAGACATTACAATTTTGAAGAAGTTTT
CTTTCTCCTTATCAACGGCACGAGAGCACAtgggatgacgtcatcacttc
cCCGTATGACATGGTAATCGAGTGGGCGATCAACTTTCCTTttcttcatc
ttgattttggTAGCATGTAAATGAAACAATGCATTTGATGTGATTTCTGG
GATGTTTTTTTAGGATTTATTGACGAtatttttggtttaattttttttca
ctctttCAGTTTTTCGGTTCGTTTATTCCTTCATTTACacgatctttttt
ttttattacaaacaGTTTTTCGAGAAAGGAATTTTAGATGAAATGTCAAG
TTATTGAGTTGTAAATATTCGATATATTATCAGACGAGTACTAGCTGATC
TCAAAACTCTAACTAACCTAAGCTTTCTAAAGAAACTATTCCACCAGGGT
TTAACGTGATGTTATTCGAGTCTAAGAAAGGGTTAGTCGAACGTATTAGA
TTTGATTTCTAATCTATTTTTTCATCTCAGTGTATGCAATATACTTGtag
atttaaaaacatttttgtgtaaAGAAAATCCTTTTGTTATCTTGTCCAAT
TATGGTTTTTTATCTAGT
Run BLAST on NCBI

protein sequence of TCONS_00018993-protein

>TCONS_00018993-protein ID=TCONS_00018993-protein|Name=TCONS_00018993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MAATRRLNKELSDIRKSQYKLLRDINVDESNILNWKGKICTDQPPYNLGA
FEIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPIISPENWKPATK
TDQVIQALVALVNMPEPEHPLRGDLAEEYTKNKKAFFQKAADFTKKHALQ
RPPE
Run BLAST on NCBI

transcript from alignment at sc0000314:161696..176280-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018993 ID=TCONS_00018993|Name=TCONS_00018993|organism=Clytia hemisphaerica|type=transcript|length=14585bp|location=Sequence derived from alignment at sc0000314:161696..176280- (Clytia hemisphaerica)
AATAGTGCAAGAATGCCCAGAAGGTCATACTGATGGTTCAAGTCAAGGCA
CACCAGTTTATGATAAGCAGTGAAAGCACACACTCGGAAAATCTTAATTG
AAAAAAAAAATTGGTAAACTCCCCTTCATTTCATCGCCATTTTGCCATTT
TGCCGGAAAAAAATCCTAGCGCTGTCGGCGCTTTTCAAAAAATTCCTCAA
AGTACAGATCTCAAAGCCATTGCTCAAGACACCGCATTCGATCTCTTCCA
GAACGACGAGGAAAGGCGTCACTTCAGTCTTTTCGCTTGGAAGGTTCGGG
TACAACATGGCTGCCACAAGGAGGTTAAATAAGGTAGATTATTCTCGATT
TTGTTTGTTGTTAGCCATATTTTTTCACGTACATATACTAGTTTTCGATT
TGTGAAAACTTTTTAGGTGTAATATTCTTTAAAGCAATTTAACTCGACTC
TGATTTATGATATTATAAAGTAGGTAGCTAAAGTCCCCTGCTCAACCAGC
TTAGTTTTCTATTTAGCTACCTCCACACACTATAACATCTCAAATGCTTG
AATGATATTACATAGCGATTGAAAAACTTATATTTATGTATTGTTTGCTT
TACAGGGTGGTACTTTTTTGATTCCAGCTTTTCAAACGTTTATTTTTAGC
TTTTACTTTCACTTTTAAATGTATTTTTTAAAGGTCCCAGAGCTAGAGCA
GAGGTTGTTCAAAACTTCTTTTCTGAAGCTGTTTTAAGATTCAAACAAAA
AAACAGCAAAAAAGCATTATATTAACAATCAAAGTTATATACTGAATACC
GTCAACTGCTCGATAACTTGGGACGGCAATTCGGCCACCATTTCACCGAA
CTTCCAAAGTCGTTTGATTTGAGTTAAGGAACGACGTAGTAAAAATTACA
CGATTTCTCTTTCGATTTTACAGTAGGTGAAAATACAGACCAGATATGCA
ACCGTCCCATGTTTCAACCAATCGTCCCAAGTTAGAGCAGTTGACGGTAC
TTTTTAGCAAAAAAATGTTGTACGTAGCAGGCAGTCTAGATTTAAACTCC
TATATCAGGCTGTCAGGATTAGAAACTAGGCTAGTCTTAGGCGGCTATCG
AAAAATTGTTCTATTAGCGTCACCCGCCCGCATCGTATTTTTTGCTGATT
TTCCGGTGCGGAGACGCAGAAAAAAATGCAGGAAAAGGAATTTGTTCTTT
TAAATATTACAGCTATTTTCTCAATCGCTCTGGCGGATATTGAACAATTG
TTTTGTTCACGTCACCACCCGCCCCCAAATTATTGGCGTGATTAAAAAAC
CCGGAAATTTTTTCCATCGCCTGTCCGCCCGCATGCATTTTTAATACCCA
TTGCAACGCGAACAGAGCATTTTTTCGATGACTGCCTTACCTCTTTTATT
TTTCCCTTTGCAACACTATAATGCTGACAAGCTGACAGTCAACACATTGA
CAAATTATCCCTGCACAAGGATAATAATCTCATATGAGAAATTTATATTG
AAATCTGTGACAAAAACAAAAGTGGTCCATTCTACTGATTGCTTCGCAAC
TCACTATTTCGCAGCTAGCTCATTAAATTTCCACCAATGAGGTTGCCGTA
CGGCAGGTCAAATTCTAGAAAAGCAGGGTAGCGTCCGTTACCGTGAGATC
AGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTTAAATGACTGA
CCAATCTAAGCAACAAAATTTCAAAACATATGAACTACGCAGCTTCGCTC
GCAGCTCTACTCTACCATTTTTGTTTTGATTTAACTTTGTATTTTAAGGA
CCAGACAGGTCAATCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGC
AAGTTACCCGACTTCACAGTATAACCGAAAAGGGCACTTTTTCTGCTGAT
TTTTCACAAAAAGGAGTATTTTTACCATTATTTTTCTCAATTGTTGAAGG
GCAGCTAAAAACGCTAAAAAGGCATGAAAAATGGTTTGTACGGCCCTCAT
TTTGGCACCCGTGGCCTCTCAGTGTCTTGCACTACGGGCAGCTGTAAAAT
CTCACCTTTTTTATTTATTTCAATTTGGGCCTAAGGTATATACTATTTCT
CATTTTCAATTCTCTGAAGAAAGTGGGAATTTGATGCAAGAGTTATACCN
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NNNAGTGCTCATTTCAATAGGAAAACAATGGTTGTTCTCTTGGGAGAAGT
GCCTTCTAGAGGTAGTTGGTTATCTATTATTTTTACATCGTTGGTTTATC
GAAATGGGGGATTCAGAGAATTTTCTATATGTTTGGTTTTTGCACAAACC
CCTGTAACTATGGGCAAGCTCCCCGTTGCTAAGATGTTGGCTTGAAATCG
AAAATGAAATCACTGAAAACGAAAGTAAAATCGACCCACACTCCAATTCC
CATAATCTTGATATAGGAGTTTTAGTCTAAACTGCCAGGTGCGCCACAAA
AAAGTTTCTTTCTTTAAAGTGAATTTTCTCAAGGTCTGAAAGTTTAAAAA
TAAAAAATCCTTTTCCATTGGAAAGAAGAAAGATAAACTAGATTTTGATG
AGTCATTTTATAAAATTTAGTTCATTAATTTAATAGTTATGCTCAATTTA
ATAAAAAAGTTTCAGAAAATGCTCAAAAACGTTAAAAAACTTTCTAAATA
TATCATACCCATGTATTGATCTATAAGGTTATAAAAAAAAACGTTTTGCT
GCAGTTAAATCATGGGGTTTGAATTGATTTTTTTATATTTGTGGCTCGGA
AACTGATTTTTTTAACTGTGAAATACAAAGTTAACAGAAGAGTAAATTGT
TGATGAAAATTGCCATTTTCAGCAATATTTTCATTTTTGGCTTTAAACAA
CTGATTTCATTTTTGAACGAATGGTATTTGATGCCCTCGCAATTAGTGGA
TCTACTGTGTCTTGTTTAGCTATGTTTTCAACTGGTTTTTGATGGAATGT
TAACTGCATAATTTTAAGAAAAATATTCTGACATGGTTTTTTCCATATAT
ATTTTACATAAAACACTAGGACTTGATAAAGACAACCGTCCAAACGTCAC
ATATACACACAACTGTGTTTTTAATCTTCACTTCTAATAGAAGTTCTATA
TAAAACACTAGATAGAGCTACTCTGTATTTCCTAAGCAACGGCATGTGAA
GAAAAATAATGCGCCATCTTCACTGAAAGTAGGTCACAGAAGGTCTTTGG
CACAGGCAATTTGTTCAACCAAGAAAAAAAACAGAAACATTATACTAATT
CGTGGAACAAAGCAAAAATACTTACAGTATAATAATAAAAAGGAGAAAAG
TTTAGTATAGTATTAAAAGAATTATTTATAAAGTATAGAATTTAGAAAAA
ATTGTAATTAGATTGGAAATAAGAAAAAACTATTCATTAACTTTTACCAA
AACACCAAAAATCCCACCTAAAGAAATTAATCCCCCTTTAACTTGTTTCT
CCCACCTAAAACCTAAAAATTTCCAAATCCTGGAAATTTCGACCCAAAAC
ACCAAAACCCCCTCCCACTATTCTGGGGGGGGGCACACTATGATAATTTG
TATAATTCAAACCAGAAAATGTGTAACCAGTTTGTTTTCGCACAAGTTTT
TTTACACAATAATGCAATTGGTTCTTTTCACTTTTCGATAAATTGACTGT
AGACATGTGTGCAGGTGATATTAATTATGGTTTTAAGGGAAATACATAAT
TTCCTGAGCAGCGAGCCAAGCCTTTATGTGAGTATGTCTGAAAAGTACTG
TAATGTCATATTTAAAATTAGAATCTTTGTTTATAGTTAATTATGGTTTT
TACGATTTTTATTCTTCTTTTCAGGAGCTATCTGATATCCGAAAATCCCA
ATACAAGCTACTTAGGGATATTAATGTCGATGAAAGCAATATACTGAATT
GGAAGGGAAAAATATGCACTGTAAGAAGATTATTTATCAAACCTCTTATA
AACCTTATCTTCACCCAAAGAGTAGATAGAAAACCCCTTCCCAAGCTTTC
GAGAGCCTTATATCGTGCTCATGTAAACCAACCTAAAGCCCTTAATGCTA
ACCTTTTGAGATTTGAAATACTACTAGCCAATACCCCATTTTCCAGTCTT
TTCAACAGCTTTCCCTTGTTTTTGTTTTTAGCTGCCATTTCTCTAGCAGT
CCAAGAAACATAAGCTTTGAAGATTATTATAAAACTTTATTTCCATATCA
ACTGCATCCATTTTAATTAAATTTTGTTCGTTCGTTGTATCGTTTTTTTT
TATCTTGCAAGTGGTTTTAGTATTTAAAGATCTTAACAACTCAAAGCGTT
GCTTGTGATGTTGTTCTTTTGCCCTTGCCTTGAATATTACGTCGGCATTG
AATAAATAATTTTTGTCCCCTTNTTGTTTTCGCACAAGTTTTTTTACACA
ATAATGCAATTGGTTCTTTTCACTTTTCGATAAATTGACTGTAGACATGT
GTGCAGGTGATATTAATTATGGTTTTAAGGGAAATACATAATTTCCTGAG
CAGCGAGCCAAGCCTTTATGTGAGTATGTCTGAAAAGTACTGTAATGTCA
TATTTAAAATTAGAATCTTTGTTTATAGTTAATTATGGTTTTTACGATTT
TTATTCTTCTTTTCAGGAGCTATCTGATATCCGAAAATCCCAATACAAGC
TACTTAGGGATATTAATGTCGATGAAAGCAATATACTGAATTGGAAGGGA
AAAATATGCACTGTAAGAAGATTATTTATCAAACCTCTTATAAACCTTAT
CTTCACCCAAAGAGTAGATAGAAAACCCCTTCCCAAGCTTTCGAGAGCCT
TATATCGTGCTCATGTAAACCAACCTAAAGCCCTTAATGCTAACCTTTTG
AGATTTGAAATACTACTAGCCAATACCCCATTTTCCAGTCTTTTCAACAG
CTTTCCCTTGTTTTTGTTTTTAGCTGCCATTTCTCTAGCAGTCCAAGAAA
CATAAGCTTTGAAGATTATTATAAAACTTTATTTCCATATCAACTGCATC
CATTTTAATTAAATTTTGTTCGTTCGTTGTATCGTTTTTTTTTATCTTGC
AAGTGGTTTTAGTATTTAAAGATCTTAACAACTCAAAGCGTTGCTTGTGA
TGTTGTTCTTTTGCCCTTGCCTTGAATATTACGTCGGCATTGAATAAATA
ATTTTTGTCCCCTTTTTTAAAAGAAGTCTTTATTCCAATCAGCCTTTAAA
ATCCCGAAATTGTTATAACGGATCCCTAAGGTTAGAGCCCCATGGTATTG
TAAACAATGATAACATTATTTTAATTTGTTCTTCATTTTCTTTAGGACCA
ACCACCTTACAACCTAGGGGCTTTCGAAATCGAAATAAATTTCCCAGCTG
AATATCCCTTCAAACCTCCTAAGGTAAGTGCATCTTTGTGTTCTAAATAT
TAATTTTTCCTTGTGAAATAATCATGAGCCTGCATGAACAGCTAGTTTTT
GGACCCCTGCCCTTGGTGGGGTGGAGGTCCTTTAAATTAACCCATTGTTC
GTTAGTTCGTTAGTTAGTTACCAGCTTTTCTCGAGATTGGCTCATTATTT
TTTTCTGATTTTTGGCACAAAGGTGCATGACCATAAACCCTCGAATGTGA
CGGAGCCTGATTTTCAAAAAAAAAAAATTTGGGCAAATTTTGGCTAAAAA
ACGGCTTAAAAACGGGTTTTTTGGACTTTGTGAAAAATTGGATCATTAAT
TTTTTCTGATTTTTAGCATGAAAGTAGAGTACAATCATAGTTAAAAAATG
GCTCAAGCAGATTTTTGCAAAAAAAATTTTTTGGCTCAAAAATCGCATTT
TTATCTATAAGAACCACTTTTAATAAGAACTAGCCGGTACCCGGCGTCGC
ACGCCGGTTTAGCTGTTGCTGAACGCATTTTAAAGTCCTTTGGATGTTGG
GAAGCTGGCTTAAAATACGATGAAGTCAAAATTAAAGGGAAAAATTGTCT
TCAAAGTTTGACTCTGTCCCTCCCAGGTCACGTATCTTTTAACCATATTT
TGAAAAAGATTTTTAAATTGTTGCAAAAATGATCAGAAAGGGCGTTATTC
AAACTATACCATACCGGCGACCTGCGACGTCCGAGAGGCTTTGCAATTAG
ATTTTTTTTCTCGCTTCGCTCGCTTTACATTTGCCGTTTGTTGATGATTA
GGAAAACTTAGACTATGTTATAGTCTAAGACGAGTTTCATCTAAGAGGAA
CCAACGTGAGACGGGAGTTTTTTACGGGAGTAGCTGTTGTCTTAGACTAT
ATCAATTCGGTAGAAAAGCGGAAATTTTGGATTTTGGTTAGCGGTGTGAT
CGGCCGGCCCGGTTCGAACAAATGTAAACAAACAGTCGGGTCTGGCCTGT
AATTGGCGCCACCAATTCTTGCTGCTAATACAGATGGAAAATGATTCCAA
AACATAGCGACAGAAAGTTGTTGATCTGTTCGTGTGGAAATGTTTTATGC
AATTCTTTAGCATTTGAGTCTCTTAGCCTCCTATTAGTTAGTACTTTAGT
TTGTAACTTCTTTGCAACAAGGTGTTTTATGTAAATGNNNNNNNNNNNNN
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GACCAATATAATTTGTCGTTTTCTTACAGGCCGCAAGCTAACGAAAAAAG
AGGATCAGTTTGGTTTGCAAAAAAAGAATGAATCATACTTAATTGTGACT
AGGTATTTTTTGCAAAGCATTTGACTGTTCAGTCAAAAACGCCTTCTCGG
CCTCAGGTCTAAAATTGGAAATTTGAACCACAGACTTTTTGGGGAATTTT
TTTTTACAAATATATTTCAATCATCACAGTGACCCTATATTTCAAATCTA
AAGTAATTTTGATCATTGGTTCAGGAATTATGATAAATTTTTAGTTTTTT
ACAAAATTCAAAGAAAATTTGTGTTTTCGCAGGATAATCAGTATATGGTT
GTAAAATTTTGGATGAAATTTGTAAACTACCGTGCAGTGGAGGCTAACAT
ACATAGCCTTTAAATGGATGACCTGGATGGTCATTAAAATACAAAGTTAA
AATAAAAAATAGCAGAGTAGAGCTGCGAGCGGATCTGCGTAGTTCACTTG
TTTTGAAATTTAGCTGCTTTGATTGGTCAGTCATTTGATGGCTATGCAAG
TTACCCGACTTCACGGTTTATCATAGGAACAAATAAAAAAAAATTACCTT
GACCTTTTAGATGAATTGGCGATGAAAACTATTAATCTTTCAATAATGAC
ATGGTGATTAGCTGAAATTTCACTGTAAATTTATTAAAAAATTGTAGCTT
TTCACCTTGAATTACCCTACAGTCAGGAGAAATTTTTATAACTTGCATTC
TGTGTATAGTCTGATTGGGCAGCAGATAATTTTGCATTTCTCCAGAAGAA
TATGGAAATTTGAAGTGAAAAAAAGATTCTTTTCGATACAATTTTTTCTA
ACATCGTAGAAATGTGTCCTAAAAAAATTTATGGTTCAAATTTCCAATAG
ACCTGAGGCTTAGAAAAGCATTTTTTGAATGAACTAGCTGCTTGCTAAAA
ATATAGTCAAAAAGAAACTTTTTGTTCAGATGTTTGAAGATGCTTAAGTA
CAGTACTGCTCTTGTATCATAGAAGATGTCGTTGTTCAGATGTTGTTGTG
GAAAGTGTTGTTCAGATATCGTGGAGGGTTATTTCTTCAGTCATAATGGA
AAGTGTTGATCAGTTATCGTGGAAAGTGTTGTTTAGATGTCGCAGAAAGT
CTTGTTTAGACACAGTGAAGGGTGTCGGTCTGATATCGTGAAAGGTGTTG
GTTGAATTTTGTAGAAATTTATTGGTTGAAATATGCCAGATAACCGCACC
TTGGTTTTTAAAATATATTGCTGGTACCACTGTACTGTCACTCAAGTGCC
AAGCTGAAAAATTGACTATCAAAAAATATAAAAAGATAGCTAAACATTAA
ACTCAATCAAGCCCAAAAATAAACAGGAAGTAAAATCTATTAAAATTTAA
GCCTTTTTTCTTTAGAAGAAACTTTTCAGTGATTGAAGATTTTTGACGAG
CACAAAATCATACTTGACTTANACTCTATCCGCCGCGAAACATATTACGT
TTTATAATATACAAACTATGTTATATCATAATAACATATTATACGGACGA
TAGCATCGTCTAAGGAAAACTTTGATGTCAAGATAAGAAAGAGGAGTGAA
ATTATAGACATGACACGAGATTCGTCGAAAAAAGGCAGCCCGTGGGTACT
CAGGCAAGAGAAGGATACGGGCATGAGCCGTTCTTAAGGATGCCTTTTTA
AAAATGGCAGTCCCTGTAAGGGTTGGAAAAATCAGAAAATCAAACTTCAG
TCCCACTAAGAGTCGGTAAAAATAGGGAAAAAAAATTCAACTTTTTACCC
CCAGAAAGATGGAAATTTAATCAAATTAGTCCCAATAAGGGAAGTAAACT
TCACAAAATTTCGCTTGTTTCTTCTTCTCTATAGTCTCGCTAAGGGTCCG
AGGGCCGAAAGTCAGGCACCTTCGTCATAACTTTTCGAATTGAATGACTT
AGATTTGNNTGAAACGAATTCGAATGTCTCAAATCAAATAAGGTCGTTAA
TTACATTCGAAAACATAAAACAAAAGAATAGAGAGAAAAAAAGAAAAAAA
CATAAGAGGCGGCCCCGGGCACGTCTGGGCAGAAATTATAATCTATCAAT
CAAAACAAACTTATGGAACAACTCAAAGTTTTTATAAAACGGCGCGAATC
TGATTTAACACATTTGTGGAGCAAGAAGCAAAAGTCATCTTTTAAAAGAA
CAAAACATTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NTTTGTATTTTGACCAGTTATGTCTTATGTGTTTCATTGTTTCAATGTTC
ACTGATTAGTTTGATAACCAGGTAGGTCCATAAAAGTATCGCTTGTTTTT
ATTTTTGTTAACTGTTTAAGTTTTTGACTCTCAGATCACGTTCAAAACGA
AAATCTATCATCCAAACATCGACGAGAAGGGACAAGTATGCTTGCCCATC
ATCTCACCTGAAAACTGGAAACCTGCTACGAAAACTGACCAAGGTATTTC
CCATTATATTTCAATTTTTATCTGGTTTTAATGTTATTTTTACTACCCTA
ATACTTTAGACACACAAACTTTCACGAAGTCGAAAAATCGCGTGGTCGAA
AATTCGCGAGGTTGAAAAATCGCGAAATTTAAGACAAAATTCACACGAAA
AAAATGGCTACGGTCTGGGGACACTTTAAACAAATTTCATCAAAATGAAA
CATATATAAGTTGTAATTCGCCAAACTTTGTTTCAAGTGGCCCACCCGCC
TCAGGAAAATTTCAACAAAACAATTTTTGTCACTGTCACGTAACCACGAT
GAAAAGTTTTAAAAGTTTTTTTGCAATTGTTTTTGTCTGCACAGAAACTG
TTGGTGAATTTTTTAAAACAATTTTTTTTAAGAAACCGATTGCTTTTTTG
TTGATATTGAGAGGCCCATCCAGACAGTTTATGTCGAAATATGAAATATG
TAAAAATTCCAACCGGGCAATTCTTTTTAAGTAGAAACTATATTACTGAA
TAAGTTCAAACCTTGTTGACGTGCCCCATTGATTGCCTTCTTCTTTTAGT
CTCCTGTCAGGACCACACATAAATTTAAGTACAAAACGATTAAATTGAGC
ACTTCTCTATTCTCACATGTCTTCTCCTTTCAGTCATTCAAGCACTTGTG
GCTTTGGTCAACATGCCAGAACCAGAGCATCCACTGAGAGGTGACCTGGC
TGAAGAATACACCAAGAATAAAAAGGCCTTTTTTCAAAAAGCTGCCGATT
TCACCAAGAAACACGCTTTACAACGACCACCGGAATAAGAATATTACTAT
CAGAGCCTCGAGAGGAGAGAGGAACAATTTTTGGTTATTTTTTTTTTCTT
TTTTGCGTTACTTCACCAACTTTGTGAGCAAAGATGAAAGTAATTTATCC
GAAAGTCAATTGAATTGTTGTTGCGTATGATATTTTATCGAAGACATTAC
AATTTTGAAGAAGTTTTCTTTCTCCTTATCAACGGCACGAGAGCACATGG
GATGACGTCATCACTTCCCCGTATGACATGGTAATCGAGTGGGCGATCAA
CTTTCCTTTTCTTCATCTTGATTTTGGTAGCATGTAAATGAAACAATGCA
TTTGATGTGATTTCTGGGATGTTTTTTTAGGATTTATTGACGATATTTTT
GGTTTAATTTTTTTTCACTCTTTCAGTTTTTCGGTTCGTTTATTCCTTCA
TTTACACGATCTTTTTTTTTTATTACAAACAGTTTTTCGAGAAAGGAATT
TTAGATGAAATGTCAAGTTATTGAGTTGTAAATATTCGATATATTATCAG
ACGAGTACTAGCTGATCTCAAAACTCTAACTAACCTAAGCTTTCTAAAGA
AACTATTCCACCAGGGTTTAACGTGATGTTATTCGAGTCTAAGAAAGGGT
TAGTCGAACGTATTAGATTTGATTTCTAATCTATTTTTTCATCTCAGTGT
ATGCAATATACTTGTAGATTTAAAAACATTTTTGTGTAAAGAAAATCCTT
TTGTTATCTTGTCCAATTATGGTTTTTTATCTAGT

Coding sequence (CDS) from alignment at sc0000314:161696..176280-

>TCONS_00018993 ID=TCONS_00018993|Name=TCONS_00018993|organism=Clytia hemisphaerica|type=CDS|length=2325bp|location=Sequence derived from alignment at sc0000314:161696..176280- (Clytia hemisphaerica)
TCATTCAAGCACTTGTGGCTTTGGTCAACATGCCAGAACCAGAGCATCCA
CTGAGAGGTGACCTGGCTGAAGAATACACCAAGAATAAAAAGGCCTTTTT
TCAAAAAGCTGCCGATTTCACCAAGAAACACGCTTTACAACGACCACCGG
AATAAATCACGTTCAAAACGAAAATCTATCATCCAAACATCGACGAGAAG
GGACAAGTATGCTTGCCCATCATCTCACCTGAAAACTGGAAACCTGCTAC
GAAAACTGACCAAGGACCAACCACCTTACAACCTAGGGGCTTTCGAAATC
GAAATAAATTTCCCAGCTGAATATCCCTTCAAACCTCCTAAGGAGCTATC
TGATATCCGAAAATCCCAATACAAGCTACTTAGGGATATTAATGTCGATG
AAAGCAATATACTGAATTGGAAGGGAAAAATATGCACTATGGCTGCCACA
AGGAGGTTAAATAAGTCATTCAAGCACTTGTGGCTTTGGTCAACATGCCA
GAACCAGAGCATCCACTGAGAGGTGACCTGGCTGAAGAATACACCAAGAA
TAAAAAGGCCTTTTTTCAAAAAGCTGCCGATTTCACCAAGAAACACGCTT
TACAACGACCACCGGAATAAATCACGTTCAAAACGAAAATCTATCATCCA
AACATCGACGAGAAGGGACAAGTATGCTTGCCCATCATCTCACCTGAAAA
CTGGAAACCTGCTACGAAAACTGACCAAGGACCAACCACCTTACAACCTA
GGGGCTTTCGAAATCGAAATAAATTTCCCAGCTGAATATCCCTTCAAACC
TCCTAAGGAGCTATCTGATATCCGAAAATCCCAATACAAGCTACTTAGGG
ATATTAATGTCGATGAAAGCAATATACTGAATTGGAAGGGAAAAATATGC
ACTATGGCTGCCACAAGGAGGTTAAATAAGTCATTCAAGCACTTGTGGCT
TTGGTCAACATGCCAGAACCAGAGCATCCACTGAGAGGTGACCTGGCTGA
AGAATACACCAAGAATAAAAAGGCCTTTTTTCAAAAAGCTGCCGATTTCA
CCAAGAAACACGCTTTACAACGACCACCGGAATAAATCACGTTCAAAACG
AAAATCTATCATCCAAACATCGACGAGAAGGGACAAGTATGCTTGCCCAT
CATCTCACCTGAAAACTGGAAACCTGCTACGAAAACTGACCAAGGACCAA
CCACCTTACAACCTAGGGGCTTTCGAAATCGAAATAAATTTCCCAGCTGA
ATATCCCTTCAAACCTCCTAAGGAGCTATCTGATATCCGAAAATCCCAAT
ACAAGCTACTTAGGGATATTAATGTCGATGAAAGCAATATACTGAATTGG
AAGGGAAAAATATGCACTATGGCTGCCACAAGGAGGTTAAATAAGTCATT
CAAGCACTTGTGGCTTTGGTCAACATGCCAGAACCAGAGCATCCACTGAG
AGGTGACCTGGCTGAAGAATACACCAAGAATAAAAAGGCCTTTTTTCAAA
AAGCTGCCGATTTCACCAAGAAACACGCTTTACAACGACCACCGGAATAA
ATCACGTTCAAAACGAAAATCTATCATCCAAACATCGACGAGAAGGGACA
AGTATGCTTGCCCATCATCTCACCTGAAAACTGGAAACCTGCTACGAAAA
CTGACCAAGGACCAACCACCTTACAACCTAGGGGCTTTCGAAATCGAAAT
AAATTTCCCAGCTGAATATCCCTTCAAACCTCCTAAGGAGCTATCTGATA
TCCGAAAATCCCAATACAAGCTACTTAGGGATATTAATGTCGATGAAAGC
AATATACTGAATTGGAAGGGAAAAATATGCACTATGGCTGCCACAAGGAG
GTTAAATAAGTCATTCAAGCACTTGTGGCTTTGGTCAACATGCCAGAACC
AGAGCATCCACTGAGAGGTGACCTGGCTGAAGAATACACCAAGAATAAAA
AGGCCTTTTTTCAAAAAGCTGCCGATTTCACCAAGAAACACGCTTTACAA
CGACCACCGGAATAAATCACGTTCAAAACGAAAATCTATCATCCAAACAT
CGACGAGAAGGGACAAGTATGCTTGCCCATCATCTCACCTGAAAACTGGA
AACCTGCTACGAAAACTGACCAAGGACCAACCACCTTACAACCTAGGGGC
TTTCGAAATCGAAATAAATTTCCCAGCTGAATATCCCTTCAAACCTCCTA
AGGAGCTATCTGATATCCGAAAATCCCAATACAAGCTACTTAGGGATATT
AATGTCGATGAAAGCAATATACTGAATTGGAAGGGAAAAATATGCACTAT
GGCTGCCACAAGGAGGTTAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010646XLOC_010646Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018993-exon-sc0000314-1575043694:175948..176280TCONS_00018993-exon-sc0000314-1575043694:175948..176280Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1575043694:171111..171206TCONS_00018993-exon-sc0000314-1575043694:171111..171206Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1575043694:169658..169735TCONS_00018993-exon-sc0000314-1575043694:169658..169735Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1575043694:163238..163346TCONS_00018993-exon-sc0000314-1575043694:163238..163346Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1575043694:161696..162597TCONS_00018993-exon-sc0000314-1575043694:161696..162597Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1510915933:175948..176280TCONS_00018993-exon-sc0000314-1510915933:175948..176280Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1510915933:171111..171206TCONS_00018993-exon-sc0000314-1510915933:171111..171206Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1510915933:169658..169735TCONS_00018993-exon-sc0000314-1510915933:169658..169735Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1510915933:163238..163346TCONS_00018993-exon-sc0000314-1510915933:163238..163346Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1510915933:161696..162597TCONS_00018993-exon-sc0000314-1510915933:161696..162597Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1491911889:175948..176280TCONS_00018993-exon-sc0000314-1491911889:175948..176280Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1491911889:171111..171206TCONS_00018993-exon-sc0000314-1491911889:171111..171206Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1491911889:169658..169735TCONS_00018993-exon-sc0000314-1491911889:169658..169735Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1491911889:163238..163346TCONS_00018993-exon-sc0000314-1491911889:163238..163346Clytia hemisphaericaexon
TCONS_00018993-exon-sc0000314-1491911889:161696..162597TCONS_00018993-exon-sc0000314-1491911889:161696..162597Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018993-proteinTCONS_00018993-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:161696..176280 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
168.377	170.286	151.396	164.735	142.818	104.698	155.827	173.514	145.565	141.068	184.153	167.354	197.134	220.113	164.826	189.898	138.933	149.492	159.181	157.632	134.325	152.019	143.072	143.14	188.403	206.893	136.502	163.605	116.989	108.988
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
IPR023313UBQ-conjugating_AS
Blast
[Close]
BLAST of TCONS_00018993 vs. Swiss-Prot (Human)
Match: UB2L3 (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.166e-59
Identity = 110/152 (72.37%), Postives = 128/152 (84.21%), Query Frame = 1 
Query:  307 MAATRRLNKELSDIRKSQYKLLRDINVDESNILNWKGKICTDQPPYNLGAFEIEINFPAEXXXXXXXXXXXXXXXHPNIDEKGQVCLPIISPENWKPATKTDQVIQALVALVNMPEPEHPLRGDLAEEYTKNKKAFFQKAADFTKKHALQRP 762
            MAA+RRL KEL +IRK   K  R+I VDE+N+L W+G I  D PPY+ GAF IEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLP+IS ENWKPATKTDQVIQ+L+ALVN P+PEHPLR DLAEEY+K++K F + A +FTKK+  +RP
Sbjct:    1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
The following BLAST results are available for this feature:
BLAST of TCONS_00018993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2L31.166e-5972.37Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
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