TCONS_00018987 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018987
Unique Name	TCONS_00018987
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1823

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000314:97099..102025-
coding sequence from alignment at sc0000314:97099..102025-

transcript sequence

>TCONS_00018987 ID=TCONS_00018987|Name=TCONS_00018987|organism=Clytia hemisphaerica|type=transcript|length=1823bp
TTTGTTCCAGATCACATTTTATTCAAGCACGTGTAATAATAATGATCATC
TTTTCTCCATTTCTTTACAGAAGAACGAAAAAGTATGTAAAGTAGATGAA
AATATAATAAACATAAGAAAAACATACATCATGGTGGAAGAAATGGAACA
GGCATTGAAGGAAATTTTGCCCTTTTTGAAATGGCATTCACCTTTAGAAT
ACAAGAAAGAAGTATTGCAGCATTTATTGGGAATGACTGGAACCTCTGAG
GGATGTTCACGACTCTCCAAGCATCTGCTGGTCAACACAACGTTGAAGGA
CTTGGTCATTTGCGATAGAATTCACGAAATACAAGAAGGTGGATTGAAAA
TTCTGGTGAATTTGACGACATTGCCAACACCAAAAGCCATCTTGACTGAA
CTCACACAAAAAGAATTTATCGATGCTCTATTAACATTGGCGTTAGACAA
AACCTTCCCGTGTGCAAACTACGTGGCCATGTTGTTATCCAACCTTACCA
AAGAGGAGAAAGATGCCAAAAGTATTTTCACTTCGATGAATCAAAATAAT
AACTTGAAGATCGACGTCTTTTTGGATGCTTTTTGTGACTTGAAATATAA
CGAGAAGTGTGAACTACACCACATTGGGAATTTGCTTGCCAATTTGACGT
CATTGAAAGAAGTTCGTTTGATGTTGTTGGATAAAGAGAAAGATGTCATA
CAACGCTTGTTACCTTTCACGCAATATAGCGAGTCGAACGTCCGACGGTA
CTCTGTGGCCGCTATAATAAAAAACTGTCTATTCGAAACAGAATTTCACG
AGTGGTTGTTATCAGAGGAAGTAGCCTTGTTGACGTTCCTCTTGCTCCCA
TTGGCTGGTCCTGAAGAATTAAAAGATAGTGAAAATGAAGAACTACCTTT
GGATTTACAGTATCTTCCACCCGACAAAAAGAGGGAACCTGATGCAGCAA
TTCAAATCATTCTCATGGAATGTATATTTCAGCTCTGCGCAACAAAGCCA
TGCCGGTTAATGCTAAAAGATTCTGGAGCATATTATATTTTGAGGGAATT
GCATCGGTCGATACCAGAAGGTGAAGAAGCGGGCCGAGAACTGCCCATCG
AGAACGCCATCCAGATTCTCATTCAAGATGAACCCGAAGCCGGTAAAGAC
AACTTCCGGGAGGTGGAAATACCGGAAGATGTGGCTAAGCGCTTTTCTGA
ACAGGATGCTGCTATGAATGGTGAAATGTTGGCTTTAAAAGATTCGGAAA
GTTGACAAGTGTGACCTCTGACCCAGAAGGGAATGTACCTCATTTATATC
ATAAGGAGAAGGGGAAGACCATTCAATGGTTTATTGTCGTCGCGCGATCT
TTCTTCTCTTTGCTGGTTATCTATATTTAGCTACCGCTGTAATGATGTCG
CTGAATCATACTTACGGTGAAGACTGAATCGTGGATGGTGGACTTTGTTG
TGCTTAGAAAAGGCTGCTGTACTGACTATCCAGTCACCACCAGCCCAAAA
CGCAGTTGTCGTGTAATGATTACCCGTTTAATATTATCATGGGTGAAAAG
AAGGAATATAATTATACAGTACTCCAATTTTCTAAGTGGCATATTATTTA
TgttcaaagattttaaaaacgaaagtctGTAGCCTGTTGAATTTAGTTTG
CTAACTTTTTTTAAGGCGAATCTTATTCTATTGTGTCAGGAATCAAAATC
TTATtctatacagttgacgctctagAATTCGAGGAGAgttggattttcat
cgattaagggagcgtatcaaatagtagagcGTCTTTTATGGTCACTTTCA
ATACTATGGacaaatagtagaac

Run BLAST on NCBI

protein sequence of TCONS_00018987-protein

>TCONS_00018987-protein ID=TCONS_00018987-protein|Name=TCONS_00018987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
LFQITFYSSTCNNNDHLFSISLQKNEKVCKVDENIINIRKTYIMVEEMEQ
ALKEILPFLKWHSPLEYKKEVLQHLLGMTGTSEGCSRLSKHLLVNTTLKD
LVICDRIHEIQEGGLKILVNLTTLPTPKAILTELTQKEFIDALLTLALDK
TFPCANYVAMLLSNLTKEEKDAKSIFTSMNQNNNLKIDVFLDAFCDLKYN
EKCELHHIGNLLANLTSLKEVRLMLLDKEKDVIQRLLPFTQYSESNVRRY
SVAAIIKNCLFETEFHEWLLSEEVALLTFLLLPLAGPEELKDSENEELPL
DLQYLPPDKKREPDAAIQIILMECIFQLCATKPCRLMLKDSGAYYILREL
HRSIPEGEEAGRELPIENAIQILIQDEPEAGKDNFREVEIPEDVAKRFSE
QDAAMNGEMLALKDSES

Run BLAST on NCBI

transcript from alignment at sc0000314:97099..102025-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018987 ID=TCONS_00018987|Name=TCONS_00018987|organism=Clytia hemisphaerica|type=transcript|length=4927bp|location=Sequence derived from alignment at sc0000314:97099..102025- (Clytia hemisphaerica)
TTTGTTCCAGATCACATTTTATTCAAGCACGTGTAATAATAATGATCATC
TTTTCTCCATTTCTTTACAGAAGAACGAAAAAGTATGTAAAGTAGATGAA
AATATAATAAACATAAGAAAAACATACATCATGGTGGAAGAAATGGAACA
GGCATTGAAGGAAATTTTGCCCTTTTTGAAATGGCATTCACCTTTAGAAT
ACAAGAAAGAAGTATTGCAGCATTTATTGGGAATGACTGGAACCTCTGAG
GGATGTTCACGACTCTCCAAGCATCTGCTGGTCAACACAACGTTGAAGGA
CTTGGTCATTTGCGATAGAATTCACGAAATACAAGAAGGTACCACACAAG
ATGGTCTTACTACCTTTGAGTTGATTAATTTTCGTGTGCATTTTTGTTTT
CGTGAATCGAGAAAGGAAAACCTTTGCACGGACAAAATCTGCCTATTTTT
CACCCAATTTATTTTAAGGCACCCTGTATTGTTCAAACCCTCAGTTGTCC
TCATAACGCAAATGAGATCGTAAGATCGATAAGTTATGTCTGTTGAGTTT
GCATTTGTAACGAGAAGATTTTATAATATTTCTTGTTATGGTACAATTTG
TTGAATTTATCATTTAAGGTGGATTGAAAATTCTGGTGAATTTGACGACA
TTGCCAACACCAAAAGCCATCTTGACTGAACTCACACAAAAAGAATTTAT
CGATGCTCTATTAACATTGGCGTTAGACAAAACCTTCCCGTGTGCAAACT
ACGTGGCCATGTTGTTATCCAACCTTACCAAAGAGGAGAAAGATGCCAAA
AGTATTTTCACTTCGATGAATCAAAATAATAACTTGAAGATCGACGTCTT
TTTGGATGCTTTTTGTGACTTGAAATATAACGAGAAGTGTGAACTACACC
ACATTGGGAATTTGCTTGCCAATTTGACGTCATTGAAAGAAGTTCGTTTG
ATGTTGTTGGATAAAGAGAAAGATGTCATACAACGCTTGTTACCTTTCAC
GCAATATAGCGAGTCGAACGTCCGACGGTACTCTGTGGCCGCTATAATAA
AAAACTGTCTATTCGAAACAGGTACGTAGGATGGATTGTTTTGTTATAGT
GGACGCGGAATGTGACGGGAAATTGGATTTTCATCGAATAAAGGAGCGTA
TCGTTTAGAAGAGCGTCGATTATGAACGTTTTTTGGACCTACCCCGGTGG
AGGTCCTATAAATTAACCTGTGTTTGTTCGTCCGTCCGTTCGTCCGTCCG
TTCGTTCGTCTGTTACCAACTTTTCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCCAAATT
CTATATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCT
CGAGATTGGCTCTTTCATTGTTTATGATTTTTTGCACAAAGATACATAAC
TTTAAACCCTCGAATGTGAAGGAGCCCGATTTTCGAAAAAAAATGTTTTT
GGGCAAATTTAGGCCAAAAAACGGCTAAAAAGGGTTTTTTGGACTTTGTG
AAATATTGGATCATTGTTTTTTTCTGATTTTTTTGCATGAAAGTAGGTAA
AAGATAGCTCAAGCAGATTTTTGTAAAAAATGTAAAAAAAAATTTTTCAG
CTCAAAAAACGCATCTTTATTTATAAGTATCACTATTGATAAGCATACAT
CAATGTTCTTAGCCAAATTATTACTCAATTTTTTGATGATGTGTACAGCA
CCTGGCCCCGAGAATGTAGGTGAAATTTGAATCAGACCTGCGAGATGTAG
ATTTGCATTTAAATAAATTTTGAATAGTTCAAACGAAATTTTGAACTCCC
AAAATCCTTTCCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAATTCATACTTTAGAAATATACTCTGACAAAAAATTAACAAAGA
TATTAATTTTATCGTGCTACAAATGATGAAAAGTAAAAGAAAGGACGAAA
AGAAGAGAAAAGAAAGTTGTTTTTATTTTGTAGGTTGAAGATTCTGTGTT
AAAATATGTGAATAATGTAACAACACCCCTGCCTCACAGCCCCGGTGGAA
CTTTTCTCACATCGGGTCAAAAATTTCTACTAAATTCCCAATGGGGATAG
AAATTCTATTTTTTCAAACTTAGGCAAATTTTCTGATTGGGCTGGGGTCC
CAGCGGGTCTGGGACACGTCGTAAAAGCTTAAAATGCCAACATTAATCAT
CTCTCAGGTAATACTTTCATGTTATGAAAGTACAACAAAAAAGTTTTATA
TAATTTGACAGACTTTTTATGTCAGTTTATGACATAAATTGTAGGTCAAC
TTTAACCCCAAAAGGTAGGTCAAACATTTTCGTTAAAATATCTAACTTAG
AACAATAAATATTGAAATGGACTATTTTCCCCATTTCCTTAGTTCATCAG
GAATAAGGAAATACCCTATCATCATAACTTAATTCCAATAGATTTCGATT
TAGAGAGGATTTATTTAAAAAATGTCTCAATTCGAGTAGTATTTGATCAA
CTTCGATTCAGATTTTTGCCTGAAAAAATCAATTCAAGTTAAAATTTTAT
GTCTAGAAATAATCAGTTATATGTAACATTTTGCTCTGAAACAACTTTTT
ATGAAGTTGAACTATCGTTAGGGCTACAATGCTAAAAAATGAGAAACCTA
CATTTTCGGGGTTTACTACATTCTCGGGGTCAGGTGCTGTAGATGTTTTT
TTTGCTCACGAAGTCTTCAATATGAAAGATTATTTCAAGAGCATGAAATT
TTGGTTTCTAAACGTTTTTTTTATAAGAAACAAACGACTAATTTTAATAG
ATCGTCACTATTTGTGTTGTGAATGATTGTTTAACGGTAATGCTCACGTA
GATATCAACTATATTTGTTAAATTTATAACCAGGTAGGTCCATAAAAGTA
TCACTTGTTTTTGTTATAGTTATGCTTTGGAATTTTAACGTGGTACGAGG
GAGACATTTGCATAATATCACCCTTGAGGTTTTCTTGTATATTCTAGAAT
TTCACGAGTGGTTGTTATCAGAGGAAGTAGCCTTGTTGACGTTCCTCTTG
CTCCCATTGGCTGGTCCTGAAGAATTAAAAGATAGTGAAAATGAAGAACT
ACCTTTGGATTTACAGTATCTTCCACCCGACAAAAAGAGGGAACCTGATG
CAGCAATTCAAATCATTCTCATGGAATGTATATTTCAGGTTAGTCTTTCA
TGTAGTAAACTGTACATTGTCTTGTACCACTTTCGTCAAATTTTCGTTGC
CGGGATGAATATTCTAAAACATTTCAGTCCTGTAGTAGAAATTTTTAGAA
AAAATGTTGGAAGTAGGATTTTAGAAAACCATATTTAAATTTAAAGTTAC
GGTTCCTATTATCCACTTACCCCACAAATATCCCCAATGTCTATCATTAG
TTGTAACAAACTTGACCCATACTATTTTTGTTTCAGCTCTGCGCAACAAA
GCCATGCCGGTTAATGCTAAAAGATTCTGGAGCATATTATATTTTGAGGG
AATTGCATCGGTCGATACCAGAAGGTGAAGAAGCGGGCCGAGAACTGCCC
ATCGAGAACGCCATCCAGATTCTCATTCAAGATGAACCCGAAGCCGGTAA
AGACAACTTCCGGGAGGTGGAAATACCGGAAGATGTGGCTAAGCGCTTTT
CTGAACAGGATGCTGCTATGAATGGTGAAATGTTGGCTTTAAAAGATTCG
GAAAGTTGACAAGTGTGACCTCTGACCCAGAAGGGAATGTACCTCATTTA
TATCATAAGGAGAAGGGGAAGACCATTCAATGGTTTATTGTCGTCGCGCG
ATCTTTCTTCTCTTTGCTGGTTATCTATATTTAGCTACCGCTGTAATGAT
GTCGCTGAATCATACTTACGGTGAAGACTGAATCGTGGATGGTGGACTTT
GTTGTGCTTAGAAAAGGCTGCTGTACTGACTATCCAGTCACCACCAGCCC
AAAACGCAGTTGTCGTGTAATGATTACCCGTTTAATATTATCATGGGTGA
AAAGAAGGAATATAATTATACAGTACTCCAATTTTCTAAGTGGCATATTA
TTTATGTTCAAAGATTTTAAAAACGAAAGTCTGTAGCCTGTTGAATTTAG
TTTGCTAACTTTTTTTAAGGCGAATCTTATTCTATTGTGTCAGGAATCAA
AATCTTATTCTATACAGTTGACGCTCTAGAATTCGAGGAGAGTTGGATTT
TCATCGATTAAGGGAGCGTATCAAATAGTAGAGCGTCTTTTATGGTCACT
TTCAATACTATGGACAAATAGTAGAAC

Coding sequence (CDS) from alignment at sc0000314:97099..102025-

>TCONS_00018987 ID=TCONS_00018987|Name=TCONS_00018987|organism=Clytia hemisphaerica|type=CDS|length=5016bp|location=Sequence derived from alignment at sc0000314:97099..102025- (Clytia hemisphaerica)
CTCTGCGCAACAAAGCCATGCCGGTTAATGCTAAAAGATTCTGGAGCATA
TTATATTTTGAGGGAATTGCATCGGTCGATACCAGAAGGTGAAGAAGCGG
GCCGAGAACTGCCCATCGAGAACGCCATCCAGATTCTCATTCAAGATGAA
CCCGAAGCCGGTAAAGACAACTTCCGGGAGGTGGAAATACCGGAAGATGT
GGCTAAGCGCTTTTCTGAACAGGATGCTGCTATGAATGGTGAAATGTTGG
CTTTAAAAGATTCGGAAAGTTGAAATTTCACGAGTGGTTGTTATCAGAGG
AAGTAGCCTTGTTGACGTTCCTCTTGCTCCCATTGGCTGGTCCTGAAGAA
TTAAAAGATAGTGAAAATGAAGAACTACCTTTGGATTTACAGTATCTTCC
ACCCGACAAAAAGAGGGAACCTGATGCAGCAATTCAAATCATTCTCATGG
AATGTATATTTCAGGTGGATTGAAAATTCTGGTGAATTTGACGACATTGC
CAACACCAAAAGCCATCTTGACTGAACTCACACAAAAAGAATTTATCGAT
GCTCTATTAACATTGGCGTTAGACAAAACCTTCCCGTGTGCAAACTACGT
GGCCATGTTGTTATCCAACCTTACCAAAGAGGAGAAAGATGCCAAAAGTA
TTTTCACTTCGATGAATCAAAATAATAACTTGAAGATCGACGTCTTTTTG
GATGCTTTTTGTGACTTGAAATATAACGAGAAGTGTGAACTACACCACAT
TGGGAATTTGCTTGCCAATTTGACGTCATTGAAAGAAGTTCGTTTGATGT
TGTTGGATAAAGAGAAAGATGTCATACAACGCTTGTTACCTTTCACGCAA
TATAGCGAGTCGAACGTCCGACGGTACTCTGTGGCCGCTATAATAAAAAA
CTGTCTATTCGAAACAGTTGTTCCAGATCACATTTTATTCAAGCACGTGT
AATAATAATGATCATCTTTTCTCCATTTCTTTACAGAAGAACGAAAAAGT
ATGTAAAGTAGATGAAAATATAATAAACATAAGAAAAACATACATCATGG
TGGAAGAAATGGAACAGGCATTGAAGGAAATTTTGCCCTTTTTGAAATGG
CATTCACCTTTAGAATACAAGAAAGAAGTATTGCAGCATTTATTGGGAAT
GACTGGAACCTCTGAGGGATGTTCACGACTCTCCAAGCATCTGCTGGTCA
ACACAACGTTGAAGGACTTGGTCATTTGCGATAGAATTCACGAAATACAA
GAAGCTCTGCGCAACAAAGCCATGCCGGTTAATGCTAAAAGATTCTGGAG
CATATTATATTTTGAGGGAATTGCATCGGTCGATACCAGAAGGTGAAGAA
GCGGGCCGAGAACTGCCCATCGAGAACGCCATCCAGATTCTCATTCAAGA
TGAACCCGAAGCCGGTAAAGACAACTTCCGGGAGGTGGAAATACCGGAAG
ATGTGGCTAAGCGCTTTTCTGAACAGGATGCTGCTATGAATGGTGAAATG
TTGGCTTTAAAAGATTCGGAAAGTTGAAATTTCACGAGTGGTTGTTATCA
GAGGAAGTAGCCTTGTTGACGTTCCTCTTGCTCCCATTGGCTGGTCCTGA
AGAATTAAAAGATAGTGAAAATGAAGAACTACCTTTGGATTTACAGTATC
TTCCACCCGACAAAAAGAGGGAACCTGATGCAGCAATTCAAATCATTCTC
ATGGAATGTATATTTCAGGTGGATTGAAAATTCTGGTGAATTTGACGACA
TTGCCAACACCAAAAGCCATCTTGACTGAACTCACACAAAAAGAATTTAT
CGATGCTCTATTAACATTGGCGTTAGACAAAACCTTCCCGTGTGCAAACT
ACGTGGCCATGTTGTTATCCAACCTTACCAAAGAGGAGAAAGATGCCAAA
AGTATTTTCACTTCGATGAATCAAAATAATAACTTGAAGATCGACGTCTT
TTTGGATGCTTTTTGTGACTTGAAATATAACGAGAAGTGTGAACTACACC
ACATTGGGAATTTGCTTGCCAATTTGACGTCATTGAAAGAAGTTCGTTTG
ATGTTGTTGGATAAAGAGAAAGATGTCATACAACGCTTGTTACCTTTCAC
GCAATATAGCGAGTCGAACGTCCGACGGTACTCTGTGGCCGCTATAATAA
AAAACTGTCTATTCGAAACAGTTGTTCCAGATCACATTTTATTCAAGCAC
GTGTAATAATAATGATCATCTTTTCTCCATTTCTTTACAGAAGAACGAAA
AAGTATGTAAAGTAGATGAAAATATAATAAACATAAGAAAAACATACATC
ATGGTGGAAGAAATGGAACAGGCATTGAAGGAAATTTTGCCCTTTTTGAA
ATGGCATTCACCTTTAGAATACAAGAAAGAAGTATTGCAGCATTTATTGG
GAATGACTGGAACCTCTGAGGGATGTTCACGACTCTCCAAGCATCTGCTG
GTCAACACAACGTTGAAGGACTTGGTCATTTGCGATAGAATTCACGAAAT
ACAAGAAGCTCTGCGCAACAAAGCCATGCCGGTTAATGCTAAAAGATTCT
GGAGCATATTATATTTTGAGGGAATTGCATCGGTCGATACCAGAAGGTGA
AGAAGCGGGCCGAGAACTGCCCATCGAGAACGCCATCCAGATTCTCATTC
AAGATGAACCCGAAGCCGGTAAAGACAACTTCCGGGAGGTGGAAATACCG
GAAGATGTGGCTAAGCGCTTTTCTGAACAGGATGCTGCTATGAATGGTGA
AATGTTGGCTTTAAAAGATTCGGAAAGTTGAAATTTCACGAGTGGTTGTT
ATCAGAGGAAGTAGCCTTGTTGACGTTCCTCTTGCTCCCATTGGCTGGTC
CTGAAGAATTAAAAGATAGTGAAAATGAAGAACTACCTTTGGATTTACAG
TATCTTCCACCCGACAAAAAGAGGGAACCTGATGCAGCAATTCAAATCAT
TCTCATGGAATGTATATTTCAGGTGGATTGAAAATTCTGGTGAATTTGAC
GACATTGCCAACACCAAAAGCCATCTTGACTGAACTCACACAAAAAGAAT
TTATCGATGCTCTATTAACATTGGCGTTAGACAAAACCTTCCCGTGTGCA
AACTACGTGGCCATGTTGTTATCCAACCTTACCAAAGAGGAGAAAGATGC
CAAAAGTATTTTCACTTCGATGAATCAAAATAATAACTTGAAGATCGACG
TCTTTTTGGATGCTTTTTGTGACTTGAAATATAACGAGAAGTGTGAACTA
CACCACATTGGGAATTTGCTTGCCAATTTGACGTCATTGAAAGAAGTTCG
TTTGATGTTGTTGGATAAAGAGAAAGATGTCATACAACGCTTGTTACCTT
TCACGCAATATAGCGAGTCGAACGTCCGACGGTACTCTGTGGCCGCTATA
ATAAAAAACTGTCTATTCGAAACAGTTGTTCCAGATCACATTTTATTCAA
GCACGTGTAATAATAATGATCATCTTTTCTCCATTTCTTTACAGAAGAAC
GAAAAAGTATGTAAAGTAGATGAAAATATAATAAACATAAGAAAAACATA
CATCATGGTGGAAGAAATGGAACAGGCATTGAAGGAAATTTTGCCCTTTT
TGAAATGGCATTCACCTTTAGAATACAAGAAAGAAGTATTGCAGCATTTA
TTGGGAATGACTGGAACCTCTGAGGGATGTTCACGACTCTCCAAGCATCT
GCTGGTCAACACAACGTTGAAGGACTTGGTCATTTGCGATAGAATTCACG
AAATACAAGAAGCTCTGCGCAACAAAGCCATGCCGGTTAATGCTAAAAGA
TTCTGGAGCATATTATATTTTGAGGGAATTGCATCGGTCGATACCAGAAG
GTGAAGAAGCGGGCCGAGAACTGCCCATCGAGAACGCCATCCAGATTCTC
ATTCAAGATGAACCCGAAGCCGGTAAAGACAACTTCCGGGAGGTGGAAAT
ACCGGAAGATGTGGCTAAGCGCTTTTCTGAACAGGATGCTGCTATGAATG
GTGAAATGTTGGCTTTAAAAGATTCGGAAAGTTGAAATTTCACGAGTGGT
TGTTATCAGAGGAAGTAGCCTTGTTGACGTTCCTCTTGCTCCCATTGGCT
GGTCCTGAAGAATTAAAAGATAGTGAAAATGAAGAACTACCTTTGGATTT
ACAGTATCTTCCACCCGACAAAAAGAGGGAACCTGATGCAGCAATTCAAA
TCATTCTCATGGAATGTATATTTCAGGTGGATTGAAAATTCTGGTGAATT
TGACGACATTGCCAACACCAAAAGCCATCTTGACTGAACTCACACAAAAA
GAATTTATCGATGCTCTATTAACATTGGCGTTAGACAAAACCTTCCCGTG
TGCAAACTACGTGGCCATGTTGTTATCCAACCTTACCAAAGAGGAGAAAG
ATGCCAAAAGTATTTTCACTTCGATGAATCAAAATAATAACTTGAAGATC
GACGTCTTTTTGGATGCTTTTTGTGACTTGAAATATAACGAGAAGTGTGA
ACTACACCACATTGGGAATTTGCTTGCCAATTTGACGTCATTGAAAGAAG
TTCGTTTGATGTTGTTGGATAAAGAGAAAGATGTCATACAACGCTTGTTA
CCTTTCACGCAATATAGCGAGTCGAACGTCCGACGGTACTCTGTGGCCGC
TATAATAAAAAACTGTCTATTCGAAACAGTTGTTCCAGATCACATTTTAT
TCAAGCACGTGTAATAATAATGATCATCTTTTCTCCATTTCTTTACAGAA
GAACGAAAAAGTATGTAAAGTAGATGAAAATATAATAAACATAAGAAAAA
CATACATCATGGTGGAAGAAATGGAACAGGCATTGAAGGAAATTTTGCCC
TTTTTGAAATGGCATTCACCTTTAGAATACAAGAAAGAAGTATTGCAGCA
TTTATTGGGAATGACTGGAACCTCTGAGGGATGTTCACGACTCTCCAAGC
ATCTGCTGGTCAACACAACGTTGAAGGACTTGGTCATTTGCGATAGAATT
CACGAAATACAAGAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010644	XLOC_010644	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018987-exon-sc0000314-1575043694:101688..102025	TCONS_00018987-exon-sc0000314-1575043694:101688..102025	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1575043694:100955..101407	TCONS_00018987-exon-sc0000314-1575043694:100955..101407	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1575043694:98188..98378	TCONS_00018987-exon-sc0000314-1575043694:98188..98378	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1575043694:97099..97939	TCONS_00018987-exon-sc0000314-1575043694:97099..97939	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1510915933:101688..102025	TCONS_00018987-exon-sc0000314-1510915933:101688..102025	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1510915933:100955..101407	TCONS_00018987-exon-sc0000314-1510915933:100955..101407	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1510915933:98188..98378	TCONS_00018987-exon-sc0000314-1510915933:98188..98378	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1510915933:97099..97939	TCONS_00018987-exon-sc0000314-1510915933:97099..97939	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1491911889:101688..102025	TCONS_00018987-exon-sc0000314-1491911889:101688..102025	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1491911889:100955..101407	TCONS_00018987-exon-sc0000314-1491911889:100955..101407	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1491911889:98188..98378	TCONS_00018987-exon-sc0000314-1491911889:98188..98378	Clytia hemisphaerica	exon
TCONS_00018987-exon-sc0000314-1491911889:97099..97939	TCONS_00018987-exon-sc0000314-1491911889:97099..97939	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018987-protein	TCONS_00018987-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000314	supercontig	sc0000314:97099..102025 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4089	14.2973	13.0664	12.2234	30.2655	20.6602	23.2865	25.2135	18.6899	16.772	16.1012	13.6732	11.9584	12.7225	15.9516	26.8431	38.1839	35.2979	6.07531	7.09091	26.5021	27.3671	37.5025	31.5289	12.2958	14.3016	12.4481	9.74658	35.1324	32.0657

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR007205	Protein_HGH1_N
IPR007206	Protein_HGH1_C
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

Blast

[Close]

BLAST of TCONS_00018987 vs. Swiss-Prot (Human)
Match: HGH1 (Protein HGH1 homolog OS=Homo sapiens GN=HGH1 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 6.034e-56
Identity = 139/357 (38.94%), Postives = 198/357 (55.46%), Query Frame = 2

Query:  146 EQALKEILPFLKWHSPLEYKKEVLQHLLGMTGTSEGCSRLSKHLLVNTTLKDLVICDRIHEIQEGGLKILVNLTTLPTPKAILTELTQKEFIDA-LLTLALDKTFPCANYVAMLLSNLTKEEKDAKSIFTSMNQNN--NLKIDVFLDAFCDLKYNEKCELHHIGNLLANLTSLKEVRLMLLDKEKDVIQRLLPFTQYSESNVRRYSVAAIIKNCLFETEFHEWXXXXXXXXXXXXXXXXAGPEELKDSENEELPLDLQYLPPDKKREPDAAIQIILMECIFQLCATKPCRLMLKDSGAYYILRELHRSIPEGEEAGRELPIENAIQILIQDEPEAGKDNFREVEIPEDVAKRFSEQD 1207
            E  + ++LPFL   +  + +   ++H+L +TG   G + L+    +   L +L              + LVNL     P    T L     + A L+  ALD  +P A   A  L+NL++E     ++  ++      +  ++  + A C   YN +  LH++  LL+NL+     R  LLD ++ V+QRLLP TQY +S+VRR  V   ++NC FE   HEWLL  EV +L FLLLPLAGPE+  + E E LP+DLQYLPPDK+REPDA I+ +L+E I  L AT P R  ++D GAY ILRELH   PE +        E  IQ+LI DEPE G +N  EV++PEDV ++  + D
Sbjct:   19 EAEVVKLLPFLAPGARADLQAAAVRHVLALTGCGPGRALLAGQAALLQALMELAPAS---APARDAARALVNLAA--DPGLHETLLAADPGLPARLMGRALDPQWPWAEEAAAALANLSREPAPCAALMAALAAAEPADSGLERLVRALCTPGYNARAPLHYLAPLLSNLSQRPAARAFLLDPDRCVVQRLLPLTQYPDSSVRRGGVVGTLRNCCFEHRHHEWLLGPEVDILPFLLLPLAGPEDFSEEEMERLPVDLQYLPPDKQREPDADIRKMLVEAIMLLTATAPGRQQVRDQGAYLILRELHSWEPEPDV---RTACEKLIQVLIGDEPERGMENLLEVQVPEDVEQQLQQLD 367

The following BLAST results are available for this feature:

BLAST of TCONS_00018987 vs. Swiss-Prot (Human)

BLAST of TCONS_00018987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HGH1	6.034e-56	38.94	Protein HGH1 homolog OS=Homo sapiens GN=HGH1 PE=1 ...	[more]

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TCONS_00018987 (transcript) - C. hemisphaerica