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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018933 ID=TCONS_00018933|Name=TCONS_00018933|organism=Clytia hemisphaerica|type=transcript|length=327bp
TGTAGCAATCTATGCTTTGATTCCTCTGTACGCGTTTGGTGAATACAAAA
TATATTATGGAGTTGCATCGGCTGCCTTCATCCTCAACTTCTTTCGAGTG
CTGAAATTCTTCGCTACTTTtgaAGTTGGGAATTATGCCAGAGTGTTTAT
GTTTCTGTTGAAAGAGGACGTTTGGGTTTTCCTTCAATTCTTTGCTGTCC
TCATGGTTGCATTTACTGGAGCTGTTTTCTTGGCTTTGAAATCCGAAATG
TCCGATGGTGGAAAAATAATTGATGGAAAAAACGAAACATTGACAATTTG
GTCAACAATGCTGAGAGAAGCACGAGC Run BLAST on NCBI protein sequence of TCONS_00018933-protein >TCONS_00018933-protein ID=TCONS_00018933-protein|Name=TCONS_00018933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
VAIYALIPLYAFGEYKIYYGVASAAFILNFFRVLKFFATFEVGNYARVFM
FLLKEDVWVFLQFFAVLMVAFTGAVFLALKSEMSDGGKIIDGKNETLTIW
STMLREAR Run BLAST on NCBI transcript from alignment at sc0000313:103294..104405- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018933 ID=TCONS_00018933|Name=TCONS_00018933|organism=Clytia hemisphaerica|type=transcript|length=1112bp|location=Sequence derived from alignment at sc0000313:103294..104405- (Clytia hemisphaerica)
TGTAGCAATCTATGCTTTGATTCCTCTGTACGCGTTTGGTGAATACAAAA
TATATTATGGAGTTGCATCGGCTGCCTTCATCCTCAACTTCTTTCGAGTG
CTGAAATTCTTCGCTACTTTTGAGTAAGTTTTTTTTTAACGCTCAAATCT
GTTTCACAAAATCACTGTCAGAAAAGAAAAGGCTCGTTCATAATTTCTTG
CTAATAGGAGTTTTAATTTGAGAGTCCAGCATCGATCTTTAAACTTTGGG
TAACCTAGAAACTTAAAAATGGTCTGATCTGGCTGAACTATTGAACATAT
CAATCGATCTTTAAACTTTGGGTAACCTTGAAACTTAAAAATGGTCCGAT
CTGGCTGAACTATTGAACATATCTTCCTTGGGTAAATTTGAAAAGCTTGA
TTTTTGGAAATAAAATATTTTTACTATTCACAATTGTATCATAAGGTCGA
GCTAATCATGGTTACTATGTCTAATACTAGATTATTTACTTTTCACTCCT
AGAGTTGGGAATTATGCCAGAGTGTTTATGTTTCTGTTGAAAGAGGACGT
TTGGGTTTTCCTTCAATTCTTTGCTGTCCTCATGGTTGCATTTACTGGAG
CTGTTTTCTTGGCTTTGAAATCCGAAATGTCCGATGGTGGAAAAATGTAA
CTCTAATTCTGAAGTTATTTTTTTACTTTCCAAAAATTTTTACAGACATT
TTTTTTGTGTAGAACCAACCAGGTGGAATTTGTTTTGCGATTTTTCCATA
TCAATCCCCATCGTGTTTCAGTCAGTTGTTTTTATTCCCACGGGTTGAAA
AAATCCTACCGGGTCTGTGAGACGGGGTGTTTAAGAAGAATGTATATTTC
TCTCTATTAAAGCAATTAAGTACTCTCGGGTACCTAATAGCCGGGGGGCC
CGCTAATTAATTTTTCGGAAATTTTCCACCCAGGACATTCTTATTCCAAC
CCCCCCGCTTTGAATTAGGAAAAAACCGCCAAATTTTGAATCTAAATAAT
TACTGATTAGATGATGAATGTCATCGATGATTAAAGAATTCTTCTTCAAT
AGAATTGATGGAAAAAACGAAACATTGACAATTTGGTCAACAATGCTGAG
AGAAGCACGAGC Coding sequence (CDS) from alignment at sc0000313:103294..104405- >TCONS_00018933 ID=TCONS_00018933|Name=TCONS_00018933|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000313:103294..104405- (Clytia hemisphaerica)
AATTGATGGAAAAAACGAAACATTGACAATTTGGTCAACAATGCTGAGAG
AAGCACGAAGTTGGGAATTATGCCAGAGTGTTTATGTTTCTGTTGAAAGA
GGACGTTTGGGTTTTCCTTCAATTCTTTGCTGTCCTCATGGTTGCATTTA
CTGGAGCTGTTTTCTTGGCTTTGAAATCCGAAATGTCCGATGGTGGAAAA
ATGTAGCAATCTATGCTTTGATTCCTCTGTACGCGTTTGGTGAATACAAA
ATATATTATGGAGTTGCATCGGCTGCCTTCATCCTCAACTTCTTTCGAGT
GCTGAAATTCTTCGCTACTTTTGAAATTGATGGAAAAAACGAAACATTGA
CAATTTGGTCAACAATGCTGAGAGAAGCACGAAGTTGGGAATTATGCCAG
AGTGTTTATGTTTCTGTTGAAAGAGGACGTTTGGGTTTTCCTTCAATTCT
TTGCTGTCCTCATGGTTGCATTTACTGGAGCTGTTTTCTTGGCTTTGAAA
TCCGAAATGTCCGATGGTGGAAAAATGTAGCAATCTATGCTTTGATTCCT
CTGTACGCGTTTGGTGAATACAAAATATATTATGGAGTTGCATCGGCTGC
CTTCATCCTCAACTTCTTTCGAGTGCTGAAATTCTTCGCTACTTTTGAAA
TTGATGGAAAAAACGAAACATTGACAATTTGGTCAACAATGCTGAGAGAA
GCACGAAGTTGGGAATTATGCCAGAGTGTTTATGTTTCTGTTGAAAGAGG
ACGTTTGGGTTTTCCTTCAATTCTTTGCTGTCCTCATGGTTGCATTTACT
GGAGCTGTTTTCTTGGCTTTGAAATCCGAAATGTCCGATGGTGGAAAAAT
GTAGCAATCTATGCTTTGATTCCTCTGTACGCGTTTGGTGAATACAAAAT
ATATTATGGAGTTGCATCGGCTGCCTTCATCCTCAACTTCTTTCGAGTGC
TGAAATTCTTCGCTACTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018933-exon-sc0000313-1575043694:104283..104405 | TCONS_00018933-exon-sc0000313-1575043694:104283..104405 | Clytia hemisphaerica | exon |
| TCONS_00018933-exon-sc0000313-1575043694:103760..103903 | TCONS_00018933-exon-sc0000313-1575043694:103760..103903 | Clytia hemisphaerica | exon |
| TCONS_00018933-exon-sc0000313-1575043694:103294..103353 | TCONS_00018933-exon-sc0000313-1575043694:103294..103353 | Clytia hemisphaerica | exon |
| TCONS_00018933-exon-sc0000313-1510915933:104283..104405 | TCONS_00018933-exon-sc0000313-1510915933:104283..104405 | Clytia hemisphaerica | exon |
| TCONS_00018933-exon-sc0000313-1510915933:103760..103903 | TCONS_00018933-exon-sc0000313-1510915933:103760..103903 | Clytia hemisphaerica | exon |
| TCONS_00018933-exon-sc0000313-1510915933:103294..103353 | TCONS_00018933-exon-sc0000313-1510915933:103294..103353 | Clytia hemisphaerica | exon |
| TCONS_00018933-exon-sc0000313-1491911889:104283..104405 | TCONS_00018933-exon-sc0000313-1491911889:104283..104405 | Clytia hemisphaerica | exon |
| TCONS_00018933-exon-sc0000313-1491911889:103760..103903 | TCONS_00018933-exon-sc0000313-1491911889:103760..103903 | Clytia hemisphaerica | exon |
| TCONS_00018933-exon-sc0000313-1491911889:103294..103353 | TCONS_00018933-exon-sc0000313-1491911889:103294..103353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000313 | supercontig | sc0000313:103294..104405 - |
Blast
The following BLAST results are available for this feature:
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