|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018823 ID=TCONS_00018823|Name=TCONS_00018823|organism=Clytia hemisphaerica|type=transcript|length=1424bp
ATAATTTACATcacaaattattttgaaaacaaagggGCTTAAAACAAGGT
GGTTACTCTTGACAACTGGAATTAATTAATACATCAATTGAGGCCGAGTC
AAAAGTTTAGTATAAAAGGAGCAAAAACTTTCCCAGTGAATCATTCACAG
AAGAAACAAGAATCAAAGAAACTTGCAACAAACAATCTCCAACCACTAAA
ACAATGGCTTCTGCAGGCGCACTTCTCTTAAATCAAGAAGTCCCATTCAT
CATGGAGCTAGACGCTGAAGTTAACGGAATCAGATTTGCAGTTCGTGGCA
AGGGAACAGGGGACGCAACAACTGGCATCATCGACACCAAATTCGTATGT
ACCACTGGTGAATTGCCAGTACCGTGGGCTTCAATCTCAAGCACAATGGC
ATATGGAGCTTTatGTTTTGCCAAATATCCAGACAgtgttaaagattttt
tcaaatcaaCAATGCCAGATGGTTATATCCAAGAAAGGACCATCAACTTC
GAAAATGATGGTACATACAAAGTTCGTGGTGTAGTTACTTACGAACATGG
TTCTATTTACAATCGCGTCACACTTAAAGGAGAAGGATTAAAAAAAGACG
GACTCATCCTTCAAAAACAATACGAATTTTGCTGTCCGAATAGTGCCGTT
TACGTTTTGCCGGACAAAGAAAACAACGGACTCCGGGTTGTTTATAATAC
AATCTACAAATTGAAAGATGGAGGACATCATTTGGCTGCTCACGAACAAA
AGAATACTCCACTCGGAGGAGGAGTTGTCGATATTCCAAATTATCATCAT
GTTCATGCTGGAAGCATCTTCTCGAAAGATCCCGAAGAAACACGAGACCA
CATGTGTTTGGTCGAAACTGTTAGAGCTGTAAATCTTGAAACATACAACT
Aaagtattttattatttattatgctaatataagatttattttgtttccta
caaatcttttttatctaaaaaggtATAGTATTTGTAATTTTCGgtctttg
atttttaaagaaagaaactgaataaaagataatcttttttacatttttac
caTGTGCTTTGGTTAATCTGAATCGCAGCAACTACCtggatatacttcct
atataggATCCGATCTACCAAGTATTAAGCAGCCTCTACAGTATAGCCTA
TTTTTTGGTCTGAATTGTCaagtattgaaattttcaatgtCAAGAGATTT
AATTCCTACGTAGTGTGGACACCTAAAGAGCTGCTGAAGTCTTTCTTTTT
CACTTTGGAACAAGGCCGCAATTATCTTGTTATTCTTAAATGTCTTATAA
CACAGTGTACGtttctttttaagaacaaacaatacaagaacttaagggct
ctgaccatagtcggaaaattgattttagtatttgaacataaaagttatgt
tttaggttctttaacacatTCAAC Run BLAST on NCBI protein sequence of TCONS_00018823-protein >TCONS_00018823-protein ID=TCONS_00018823-protein|Name=TCONS_00018823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MASAGALLLNQEVPFIMELDAEVNGIRFAVRGKGTGDATTGIIDTKFVCT
TGELPVPWASISSTMAYGALCFAKYPDSVKDFFKSTMPDGYIQERTINFE
NDGTYKVRGVVTYEHGSIYNRVTLKGEGLKKDGLILQKQYEFCCPNSAVY
VLPDKENNGLRVVYNTIYKLKDGGHHLAAHEQKNTPLGGGVVDIPNYHHV
HAGSIFSKDPEETRDHMCLVETVRAVNLETYN Run BLAST on NCBI transcript from alignment at sc0000309:237030..239614+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018823 ID=TCONS_00018823|Name=TCONS_00018823|organism=Clytia hemisphaerica|type=transcript|length=2585bp|location=Sequence derived from alignment at sc0000309:237030..239614+ (Clytia hemisphaerica)
ATAATTTACATcacaaattattttgaaaacaaagggGCTTAAAACAAGGT
GGTTACTCTTGACAACTGGAATTAATTAATACATCAATTGAGGCCGAGTC
AAAAGTTTAGTATAAAAGGAGCAAAAACTTTCCCAGTGAATCATTCACAG
AAGAAACAAGAATCAAAGAAACTTGCAACAAACAATCTCCAACCACTAAA
ACAATGGCTTCTGCAGGCGCACTTCTCTTAAATCAAGAAGTCCCATTCAT
CATGGAGCTAGACGCTGAAGTTAACGGAATCAGATTTGCAGTTCGTGGCA
AGGGAACAGGGGACGCAACAACTGGCATCATCGACACCAAATTCGTATGT
ACCACTGGTGAATTGCCAGTACCGTGGGCTTCAATCTCAAGCACAATGGC
ATATGGAGCTTTGTAAGTATCTGATACTTTTAACGGAATAACTAGAAGAC
TACAACCAAAAGTTCTCAGTTCAAGTCCTCGTTCGATCCATAGATAGCAA
ACCCTGGTCATTGTAAACCTTGTGAAATCACGATCGCTATGATTCCCCTA
TCCTGGGTAGATCCATAACATTTGCATAGGGGGACCGTCCTTTCTTTGTA
GTTctattagcctatttcataggattcgtgtttttAGTACATGATACTTT
TCTCCATAACTACAGTAATcaacttaaaaaaaatagaatgtAACAAATGC
TCGAATCCTTTGAAATAGGATATCACCAATCTCTTACTCAAAGTTCTGCC
TTCTGTATCATTCTTATCAGTTTCtatatcattcttatcaaatttctttc
atttttagatGTTTTGCCAAATATCCAGACAgtgttaaagattttttcaa
atcaaCAATGCCAGATGGTTATATCCAAGAAAGGACCATCAACTTCGAAA
ATGATGGTACATACAAAGTTCGTGGTGTAGTTACTTACGAACATGGTTCT
ATTTACAATCGCGTCACACTTAAAGGAGAAGGATTAAAAAAAGACGGACT
CATCCTTCAAAAACAATACGAATTTTGCTGTCCGAATAGTGCCGTTTACG
TTTTGCCGGACAAAGAAAACAACGGACTCCGGGTTGTTTATAATACAGTA
AGTTCTTCTTTTTACgagatattttttttattttttttgtcgatATTGAA
TTCAAACAAATAATTCTTGATAGCTAGAAACTATACCCGGTAGGACCATT
GCCCTATcggaaaatttggctaaaagtTCATCCACGGGGGAAGACCCCAC
AACTTCAGTCCCACTTTCaatttgatttcatccctatttgaaattcaatt
gaaGAAATTGTACTCCCAAAACCGTCTTCAACTTTTATCCCACCTGTGGG
AAAAACGTTTATCGTGGCCATGAGATAGGTGTGTAcgtactttaatcgta
gaaattttagcgagactaattttagcgttttagcgagttttccctatttt
cgctaaaataaatctcgctaaaacacgccgaatcgaaaGATTGcttgcta
aaatttatccgctcgaaatttctggttatattgccttgatacatttttat
caatatgaAGGATTTCAGtacaaagaaatgctagaaaacgaattcagtca
ataatgtaatacaagtcttcgctaaaatttatccatgcgaaattatttga
aaccgtgattcgctaaaatattgctacgattaaagtattccAAAGACAAA
CGTTTTATAAATTCATTGTATGTAGAGGCTTTTTCTTCCATGTCCTAATG
ATGTTTTAGAGAATTCCAGCTTGCGCCAGATTTTTTCACTGGTGATCCTC
TCcaaatgtttatgtttatttcTGTCTTGCCTATTATTTTGAATCTTTAT
CTTTGTTCACAGATCTACAAATTGAAAGATGGAGGACATCATTTGGCTGC
TCACGAACAAAAGAATACTCCACTCGGAGGAGGAGTTGTCGATATTCCAA
ATTATCATCATGTTCATGCTGGAAGCATCTTCTCGAAAGATCCCGAAGAA
ACACGAGACCACATGTGTTTGGTCGAAACTGTTAGAGCTGTAAATCTTGA
AACATACAACTAaagtattttattatttattatgctaatataagatttat
tttgtttcctacaaatcttttttatctaaaaaggtATAGTATTTGTAATT
TTCGgtctttgatttttaaagaaagaaactgaataaaagataatcttttt
tacatttttaccaTGTGCTTTGGTTAATCTGAATCGCAGCAACTACCtgg
atatacttcctatataggATCCGATCTACCAAGTATTAAGCAGCCTCTAC
AGTATAGCCTATTTTTTGGTCTGAATTGTCaagtattgaaattttcaatg
tCAAGAGATTTAATTCCTACGTAGTGTGGACACCTAAAGAGCTGCTGAAG
TCTTTCTTTTTCACTTTGGAACAAGGCCGCAATTATCTTGTTATTCTTAA
ATGTCTTATAACACAGTGTACGtttctttttaagaacaaacaatacaaga
acttaagggctctgaccatagtcggaaaattgattttagtatttgaacat
aaaagttatgttttaggttctttaacacatTCAAC Coding sequence (CDS) from alignment at sc0000309:237030..239614+ >TCONS_00018823 ID=TCONS_00018823|Name=TCONS_00018823|organism=Clytia hemisphaerica|type=CDS|length=2097bp|location=Sequence derived from alignment at sc0000309:237030..239614+ (Clytia hemisphaerica)
ATGGCTTCTGCAGGCGCACTTCTCTTAAATCAAGAAGTCCCATTCATCAT
GGAGCTAGACGCTGAAGTTAACGGAATCAGATTTGCAGTTCGTGGCAAGG
GAACAGGGGACGCAACAACTGGCATCATCGACACCAAATTCGTATGTACC
ACTGGTGAATTGCCAGTACCGTGGGCTTCAATCTCAAGCACAATGGCATA
TGGAGCTTTatGTTTTGCCAAATATCCAGACAgtgttaaagattttttca
aatcaaCAATGCCAGATGGTTATATCCAAGAAAGGACCATCAACTTCGAA
AATGATGGTACATACAAAGTTCGTGGTGTAGTTACTTACGAACATGGTTC
TATTTACAATCGCGTCACACTTAAAGGAGAAGGATTAAAAAAAGACGGAC
TCATCCTTCAAAAACAATACGAATTTTGCTGTCCGAATAGTGCCGTTTAC
GTTTTGCCGGACAAAGAAAACAACGGACTCCGGGTTGTTTATAATACAAT
CTACAAATTGAAAGATGGAGGACATCATTTGGCTGCTCACGAACAAAAGA
ATACTCCACTCGGAGGAGGAGTTGTCGATATTCCAAATTATCATCATGTT
CATGCTGGAAGCATCTTCTCGAAAGATCCCGAAGAAACACGAGACCACAT
GTGTTTGGTCGAAACTGTTAGAGCTGTAAATCTTGAAACATACAACTAaA
TGGCTTCTGCAGGCGCACTTCTCTTAAATCAAGAAGTCCCATTCATCATG
GAGCTAGACGCTGAAGTTAACGGAATCAGATTTGCAGTTCGTGGCAAGGG
AACAGGGGACGCAACAACTGGCATCATCGACACCAAATTCGTATGTACCA
CTGGTGAATTGCCAGTACCGTGGGCTTCAATCTCAAGCACAATGGCATAT
GGAGCTTTatGTTTTGCCAAATATCCAGACAgtgttaaagattttttcaa
atcaaCAATGCCAGATGGTTATATCCAAGAAAGGACCATCAACTTCGAAA
ATGATGGTACATACAAAGTTCGTGGTGTAGTTACTTACGAACATGGTTCT
ATTTACAATCGCGTCACACTTAAAGGAGAAGGATTAAAAAAAGACGGACT
CATCCTTCAAAAACAATACGAATTTTGCTGTCCGAATAGTGCCGTTTACG
TTTTGCCGGACAAAGAAAACAACGGACTCCGGGTTGTTTATAATACAATC
TACAAATTGAAAGATGGAGGACATCATTTGGCTGCTCACGAACAAAAGAA
TACTCCACTCGGAGGAGGAGTTGTCGATATTCCAAATTATCATCATGTTC
ATGCTGGAAGCATCTTCTCGAAAGATCCCGAAGAAACACGAGACCACATG
TGTTTGGTCGAAACTGTTAGAGCTGTAAATCTTGAAACATACAACTAaAT
GGCTTCTGCAGGCGCACTTCTCTTAAATCAAGAAGTCCCATTCATCATGG
AGCTAGACGCTGAAGTTAACGGAATCAGATTTGCAGTTCGTGGCAAGGGA
ACAGGGGACGCAACAACTGGCATCATCGACACCAAATTCGTATGTACCAC
TGGTGAATTGCCAGTACCGTGGGCTTCAATCTCAAGCACAATGGCATATG
GAGCTTTatGTTTTGCCAAATATCCAGACAgtgttaaagattttttcaaa
tcaaCAATGCCAGATGGTTATATCCAAGAAAGGACCATCAACTTCGAAAA
TGATGGTACATACAAAGTTCGTGGTGTAGTTACTTACGAACATGGTTCTA
TTTACAATCGCGTCACACTTAAAGGAGAAGGATTAAAAAAAGACGGACTC
ATCCTTCAAAAACAATACGAATTTTGCTGTCCGAATAGTGCCGTTTACGT
TTTGCCGGACAAAGAAAACAACGGACTCCGGGTTGTTTATAATACAATCT
ACAAATTGAAAGATGGAGGACATCATTTGGCTGCTCACGAACAAAAGAAT
ACTCCACTCGGAGGAGGAGTTGTCGATATTCCAAATTATCATCATGTTCA
TGCTGGAAGCATCTTCTCGAAAGATCCCGAAGAAACACGAGACCACATGT
GTTTGGTCGAAACTGTTAGAGCTGTAAATCTTGAAACATACAACTAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018823-exon-sc0000309-1491911889:237030..237441 | TCONS_00018823-exon-sc0000309-1491911889:237030..237441 | Clytia hemisphaerica | exon |
| TCONS_00018823-exon-sc0000309-1510915933:237030..237441 | TCONS_00018823-exon-sc0000309-1510915933:237030..237441 | Clytia hemisphaerica | exon |
| TCONS_00018823-exon-sc0000309-1575043694:237030..237441 | TCONS_00018823-exon-sc0000309-1575043694:237030..237441 | Clytia hemisphaerica | exon |
| TCONS_00018823-exon-sc0000309-1491911889:237838..238126 | TCONS_00018823-exon-sc0000309-1491911889:237838..238126 | Clytia hemisphaerica | exon |
| TCONS_00018823-exon-sc0000309-1510915933:237838..238126 | TCONS_00018823-exon-sc0000309-1510915933:237838..238126 | Clytia hemisphaerica | exon |
| TCONS_00018823-exon-sc0000309-1575043694:237838..238126 | TCONS_00018823-exon-sc0000309-1575043694:237838..238126 | Clytia hemisphaerica | exon |
| TCONS_00018823-exon-sc0000309-1491911889:238892..239614 | TCONS_00018823-exon-sc0000309-1491911889:238892..239614 | Clytia hemisphaerica | exon |
| TCONS_00018823-exon-sc0000309-1510915933:238892..239614 | TCONS_00018823-exon-sc0000309-1510915933:238892..239614 | Clytia hemisphaerica | exon |
| TCONS_00018823-exon-sc0000309-1575043694:238892..239614 | TCONS_00018823-exon-sc0000309-1575043694:238892..239614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:237030..239614 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006091 | generation of precursor metabolites and energy |
| GO:0008218 | bioluminescence |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008218 |
bioluminescence |
| biological_process |
GO:0006091 |
generation of precursor metabolites and energy |
Blast
The following BLAST results are available for this feature:
|
