TCONS_00018801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018801
Unique NameTCONS_00018801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018801 ID=TCONS_00018801|Name=TCONS_00018801|organism=Clytia hemisphaerica|type=transcript|length=615bp
gatcataaaatcaaaatattggaACTCCAAAATGAATTCAAGTTAAAAGA
AATGGAGATTGAAagcaaacaaaaacagaaaacacTCGATTTAGAGAAAG
AAGTTCAATCTCTTAAAAACGAGattgaaattatgaaaatgagAGCTCAA
CATCAACAAACCAATGCTGGTTACaaattaaaagaagaaaaccaAACCTT
GAAAAACCAGATTGCATTGATGCAACTCAAATCTGAGCATGCGCAAATTC
AGGCTGATAGCAATTTACGACAAGAAAATCAGACTCTGAAGAATCAaatg
gaaaatatgaaattgtaaaATGATAAAGAGAAAGCAGCCATACGACATGA
AATGGAGAAAAAAGCTAATGACCTTCAGCTTCAAATTGATATATTGAATC
TGAAAAAGGAGCAACCGTTTGAGGATGCTCCGCATGGAATTCCTGATCGA
TTTTTCGAAGGAGCTGAACGGTTTTTGGTGAATTACAATACAGGGGGCGG
AGAttttttcagtgaaaatttaTACAAATTGTGGTATGAAGATATGTCAC
GTTCTATGGAAAATCGTAAGCAGTATGCCAATGAGAAATTCGTCTTGATT
cgtaaagaaacaaaa
Run BLAST on NCBI

protein sequence of TCONS_00018801-protein

>TCONS_00018801-protein ID=TCONS_00018801-protein|Name=TCONS_00018801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
DHKIKILELQNEFKLKEMEIESKQKQKTLDLEKEVQSLKNEIEIMKMRAQ
HQQTNAGYKLKEENQTLKNQIALMQLKSEHAQIQADSNLRQENQTLKNQM
ENMKL
Run BLAST on NCBI

transcript from alignment at sc0000306:139788..140402

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018801 ID=TCONS_00018801|Name=TCONS_00018801|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0000306:139788..140402 (Clytia hemisphaerica)
ttttgtttctttacgAATCAAGACGAATTTCTCATTGGCATACTGCTTAC
GATTTTCCATAGAACGTGACATATCTTCATACCACAATTTGTAtaaattt
tcactgaaaaaaTCTCCGCCCCCTGTATTGTAATTCACCAAAAACCGTTC
AGCTCCTTCGAAAAATCGATCAGGAATTCCATGCGGAGCATCCTCAAACG
GTTGCTCCTTTTTCAGATTCAATATATCAATTTGAAGCTGAAGGTCATTA
GCTTTTTTCTCCATTTCATGTCGTATGGCTGCTTTCTCTTTATCATttta
caatttcatattttccattTGATTCTTCAGAGTCTGATTTTCTTGTCGTA
AATTGCTATCAGCCTGAATTTGCGCATGCTCAGATTTGAGTTGCATCAAT
GCAATCTGGTTTTTCAAGGTTtggttttcttcttttaatttGTAACCAGC
ATTGGTTTGTTGATGTTGAGCTctcattttcataatttcaatCTCGTTTT
TAAGAGATTGAACTTCTTTCTCTAAATCGAgtgttttctgtttttgtttg
ctTTCAATCTCCATTTCTTTTAACTTGAATTCATTTTGGAGTtccaatat
tttgattttatgatc

Coding sequence (CDS) from alignment at sc0000306:139788..140402

>TCONS_00018801 ID=TCONS_00018801|Name=TCONS_00018801|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000306:139788..140402 (Clytia hemisphaerica)
ttacaatttcatattttccattTGATTCTTCAGAGTCTGATTTTCTTGTC
GTAAATTGCTATCAGCCTGAATTTGCGCATGCTCAGATTTGAGTTGCATC
AATGCAATCTGGTTTTTCAAGGTTtggttttcttcttttaatttGTAACC
AGCATTGGTTTGTTGATGTTGAGCTctcattttcataatttcaatCTCGT
TTTTAAGAGATTGAACTTCTTTCTCTAAATCGAgtgttttctgtttttgt
ttgctTTCAATCTCCATTTCTTTTAACTTGAATTCATTTTGGAGTtccaa
tattttgattttatgatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010530XLOC_010530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018801-exon-sc0000306-1491911889:139788..140402TCONS_00018801-exon-sc0000306-1491911889:139788..140402Clytia hemisphaericaexon
TCONS_00018801-exon-sc0000306-1510915933:139788..140402TCONS_00018801-exon-sc0000306-1510915933:139788..140402Clytia hemisphaericaexon
TCONS_00018801-exon-sc0000306-1575043694:139788..140402TCONS_00018801-exon-sc0000306-1575043694:139788..140402Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018801-proteinTCONS_00018801-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000306supercontigsc0000306:139788..140402 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0852128	0	0	0.117842	0.0931201	0.385803	0	0.336125	0.372046	0.366282	0.416428	1.85414	1.86056	0	0	0.221828	0.121674	3.95206	3.50631	0.0983128	0.439701	0.183916	0.790474	0.845381	0.607929	0.170612	0.391518	0.750235	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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