TCONS_00018778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018778
Unique NameTCONS_00018778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018778 ID=TCONS_00018778|Name=TCONS_00018778|organism=Clytia hemisphaerica|type=transcript|length=1939bp
ctAGATCAAGGTATTCTGATGACTTGGGGCAGCGGTGAAGATGGTTGCCT
TGGTCACGGAAACACAAATGACGTCAGCCATGCCAGAGTTGTAGAAGATC
TTGTCGGTTCAACAGTGGCACAGATTTCGTGCGGTTCCGCCCATATGATG
GCTTTGACCActGAGCAACAGGTGTTTGTATGGGGACGAGGCTCTCATGG
CAACTTTGGCTTGAACGACCGTCACAATAGATGTAATCCAACCAATGTCC
CGTTGCCCATGGATACGAAGCCTAGATCCGTTGTCTGCGGAACAGATTGC
TCTTTCATTATTACTGATAAAGGGGCTGTCTATGCTTGTGGAAACAATAG
AAACAACAAGCTTGCATTACTCACAGACAATGAATTAAAGAAaggcaatt
tttcaaaagtggaaAATGATTGCCTCGTTTTCAAGAAGGTCACATGTCAC
CCCATATGTGAGCATCGCATTATTTCCATAGCAACCGGTCCAACCCATTC
TTGTTTCTTGACTGAATCAGGACTTCTAATCACTTGTGGCGCTAACTCAA
GCTACCAGTTGGGTTACGAGAGGCAAGAAAATGATTTACGACCAGGAATT
GTTGAATTATCGAGACAGAATCCGATACATTTGATGGATTGCGGTGACCT
ACATACTGTGGTTGTCACTTCTGACGATCAGATCTACAGTTTTGGTAGTA
GCCGCCACGGGCGTTTAGGGCGCCGAACGGATGAAGACTATACTTGGAAA
CCACAGCTGATTGAAATCgaagaaaatgacgtcacaatacAATCACTTTC
AGTTTCGCACCGAACGACGCTGTTGGCTGGAAAAGttCACAACGCTTCAA
CATTGACTCCGATGAACTATTAAGGCTGGTCATTGGTCATTTTCACTGct
atcaaatgaaaaatgacaaatgtACACTGCAGAAAGAAAAATGATTAGTT
CCAATAATCAAGAGGAAATTGGTTTTTGAGCCTTGAGTTCAATGGATATT
AAATGGAAGAGCAACATTTATCAATATCAGCATCTTTGTCACAACATTTC
ACGAACGTTCAATGAATGTAGTATGAACATCAAATGACACCCGAAGAACG
CTTTTTAGTGAAACGAGTATATtttcacttttgaggacggcagaTTGACT
GAAACGATTTGTAACAGCTCGCAGTTTTGGCTCGCGAAATCGAGGACGGT
GAAactgctgatttaccgtcgtcctcagtcagagTCAAATCAGAACACAT
ATATGTACACAACCTCGTTTTTATCTAAACGAATGGATTTTTTGTTCCAT
AAATGTGACTTATCTACTTCTTTTTTGTGGAAACTGGAAATTATTGTGAT
GATCGACCTCGATGAGTGAAGTCTGCTTAAATATTCGATGTTGGATTGCC
TAatacaaatgaaaaatattgaataaaagaCAGGGAAATAAATATCATAT
ACACCATTCAGGAtactaaaataaattaaatatttttttgaactaATGTT
AAAATCTGTCAAAATGGCGTCTTGTTTGGCGGTCCATTTTCAAGTTCCTG
CAATACATGTAGATAGAATGTAGTTTGTGAGCGCGTGACGTTATTCAATA
TATcttaaaggaagaaactttGACTGAACGAAAATTTAGCGAATTTGGCG
GATTCGACGGATTtacgcaaaaatttcttatttccaCCATCCGCCCAATT
AAATTCCTTCTAAATTTTATTTAGTTATGTATTTTCGAAATTTGTATTTC
CGGGAGCgggttttttgtttctttaacaACAGTTTTTTACCGAAGGTGTG
TCCTTCAACCGCCTTCACTCTCCTACATAGGATcgttacaaaaagaaaaa
tgaggaaaagtatgcaaaatttttacaaacattTTTAGCTATGCAAACCA
ATGTTTTTTAGATGCATTTTAATTTTtcgcatttttttt
Run BLAST on NCBI

protein sequence of TCONS_00018778-protein

>TCONS_00018778-protein ID=TCONS_00018778-protein|Name=TCONS_00018778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
LDQGILMTWGSGEDGCLGHGNTNDVSHARVVEDLVGSTVAQISCGSAHMM
ALTTEQQVFVWGRGSHGNFGLNDRHNRCNPTNVPLPMDTKPRSVVCGTDC
SFIITDKGAVYACGNNRNNKLALLTDNELKKGNFSKVENDCLVFKKVTCH
PICEHRIISIATGPTHSCFLTESGLLITCGANSSYQLGYERQENDLRPGI
VELSRQNPIHLMDCGDLHTVVVTSDDQIYSFGSSRHGRLGRRTDEDYTWK
PQLIEIEENDVTIQSLSVSHRTTLLAGKVHNASTLTPMNY
Run BLAST on NCBI

transcript from alignment at sc0000306:188971..195511+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018778 ID=TCONS_00018778|Name=TCONS_00018778|organism=Clytia hemisphaerica|type=transcript|length=6541bp|location=Sequence derived from alignment at sc0000306:188971..195511+ (Clytia hemisphaerica)
ctAGATCAAGGTATTCTGATGACTTGGGGCAGCGGTGAAGATGGTTGCCT
TGGTCACGGAAACACAAATGACGTCAGCCATGCCAGAGTTGTAGAAGATC
TTGTCGGTTCAACAGTGGCACAGATTTCGTGCGGTTCCGCCCATATGATG
GCTTTGACCAGTAAGTTATCTACGCCATTTTCGTTCTNCCTtgcctacct
tcgggtagatagctatcgaaagaggagccttcgggtcgcctccgactgcg
gtcgcagacttacttacttctTGCTTGCTTGCTTGCCTAatttaaagaaa
agaatttcagcTAAGCTTCAAAGGACAACTCCACTGTTTTTCTATCATAC
TAACTGACAATGCTTTGTAACCACTTAGCTTATACCACtaactttttccc
aaaattttgacCCCATCACTTCAAACGGCTCTACGAGGCCCATGAGCAAT
GTAACCCATCACACCTGATAATTTCCTAAGTGAAACAGTTCACTATCGAG
CGGCATTTTGCGTAGTTCaatcttttctattttgttttagctGAGCAACA
GGTGTTTGTATGGGGACGAGGCTCTCATGGTAAGATTATCATATATTTCA
ATAAATATTCTGCTTTTTTTTTCCCCAAGGTCAGTGATATAGTCCTACAG
TACTGAGAtagaaaaaatcgcaaaatagaaattttcctccttgttttgaa
ttttctgattggCTGATCCACTCCGTTTCGAGAAAGCTGATTGGCTGTTT
TGGCtaagtcaaaaaaattgatcTAATTGGCTTGCTTATACTTTTAAACG
ACCGGGCCCTGGGACTTTCTTCATCAGGAATCTCAATCTGGGCTTTTGTA
ATTTCAATATGGATTAGAGAAATAGCACCTTACAATTACAATTTTTTGAA
TCGCAAAACTTAATGGTTTGAGCTCTATAGCGACAACTTCAGTCTAGGAT
TGTATAAAGCTACAAGagcatgaaactgccagtagcagaataaaaaaatg
tctttcCTTCCTTCCTTACTGACATCGCTCTTCATATGTATGGtgcatta
taaaaaaaactgaagaacTACTTACAAtgtaatacacgtttttctttaaa
gaaactagttttaccaagcagcctcaatatTTCTTAagaatcggcctttt
gagccttaaatgtttcttacatgtttctaaactttttgacacaatcagcc
tatttttcatgcaaagaaaaaaaaacatttgttttgattggaagattttt
aaagaaaacgaattaaaaaatgttattttctcattctcagcctcagcatg
tttcttagttttaggcattctgagcctcatgtttcttaaaagtgtgtttc
ttaaaaaaaaaacgtgtatcctcTCATCTTTCTACTGGGTTCagttgtta
aactttttcttttgtaaaggtagtttttggccttcATTAACAGCTCTGTA
TTGCTTTCTTCATATTCCCAGGCAACTTTGGCTTGAACGACCGTCACAAT
AGATGTAATCCAACCAATGTCCCGTTGCCCATGGATACGAAGCCTAGATC
CGTTGTCTGCGGAACAGATTGCTCTTTCATTATTACTGATAAAGGGGCTG
TCTATGCTTGTGGAAACAATAGGTGGGTTTGAtataggctgcacgcatcc
cctctgatatgttttgatataagggatgtgtatcgtgtataaaattctcg
TCTGAGAGTTACCCcagattttgtgtttttgagttttagaaacttgatta
gcttgATTAGTAAGTGAATATGAGAGGTctttaaatttcatgaaaattta
attcaaaattcGAGTGGTTAGAGGttaatacaatcattggatttctgAAG
CTTTTGAATTGAAACAGGTAACTCTGGGACAGGAATTTTGAACacacatc
ccctatatcaaaatcaattctggTGAAGCACGCAGTCTAGGTTTGGTAAT
ACTTTCTTTACTTTCtttacttttatttcaaaaatttgttaaaGTGTACC
TTAAAATGGCACATACTAGTTTAACGCTTAagaattgattttgaaaattt
tgggtGGGTTTAGTTTCGCGATTTCGAGAGTTTTTTGTCACAAAAATGGT
AAGAATAaagcttttcataaattaagtcaagagcaacgcttacctctttt
tcaaaatattgctatgatAATTGATTTCCAAAGGAGTTCAACTTGTTATG
CTTCATTTATGTAAAGTAACGCTTGAACCTTGGAAATGGTTTCAAACGAA
gcagtcgttgcactcaaaataatttatgaaaaggcctattcgcgaaatta
aatatcACGAAAATTTATCCgattataatatttttctttatcccCAGAAA
CAACAAGCTTGCATTACTCACAGACAATGAATTAAAGAAaggcaattttt
caaaagtggaaAATGATTGCCTCGTTTTCAAGAAGGTCACATGTCACCCC
ATATGTGAGCATCGCATTATTTCCATAGCAACCGGTCCAACCCATTCTTG
TTTCTTGACTGGTAAGTTTGCTGTGAtcttcaatgttttcttttgattcg
GTTTTACACCTGGCGTTTATTCGGCCTAAAGATCGTGATATAATCTTATA
ACGTCTCTACTGTGGTAGGTTGGCGCATATAAAAGGGACGATACTTCAAA
TTGTGATAGAgctctgaaattttgcacagaggttCCTCATGAAGTCAATT
GAGAGTGAGACACTCTTGAAAATGATGTTTCTATTGATGTCagcactttt
tttgcaaaaatttcatctccGAAAAACCCTAGTATATTATATACTGCGGA
GTATGTTAGCACATACATATAAAAGGGACGATACTTCAAACTGTGATAGA
gctctgaaattttgcacagaggttCCTCATGAAGTCAATTAAGAGTGAGA
CACTCTTGAAAATGATGTTTCTGTTGATGTCagcactttttttgcaaaaa
tttaatCTCCGAAAAACCTTAGTATACTATATACTGCGGAGTATGTTTAG
CACATATAAAAGGGACGATACTTCAAACTCATGAAGTCATTTTCAGAGCA
CTATCACAATTTGAAGTATACATGTGATAATCCGCCCCACTACTCACAAA
ATATAGTAATACAGTAATACTAGAGCCAAAAAGTTCTTTTGTAAAACGGT
TATCCGTTGGTTAAAGGACTGGGCCCCATAAAGTACACTAGAGTCTCTCt
aactctataactcgaatgtctccttaactcgaatgtctccctAAATTTTA
TGATTCCTTCAGgtaacaataccttataaactttactccataaatcgaaa
tttccttaattcaTGAAGAATttatgttcgagttatggagacttcacTGT
ACCAAAGTACGTAAAAAAGTTTCATAATTATTTAAAACAGAAGCTTGTGC
CAGGGACGCGACGCGACGGATGAATGCAACACTTTTGGTTTCCTAGTCAT
TGTTAAAGTGTATGCTTCGTCGATTTTCAGCATGAAAAAttcttcacttt
ttaaaaaatctttttcactgCCTCCCTTCACTTTTCAAGAGTGACAATAA
TTATTTGGTTTTTCAAGTTTTCTATAGTTCACTTGCAATGACTCAGAATT
TTAAAGAgaatcactcgtgtgaaaatgCTAATTATAGCACAAccattgaa
gaagttgattttcttcttcttcatttttcatctttgtttttccatttttt
gaattttaattatagCAATATTCCACTTcggattatctttttaaatagca
caaaatcgctacttaattcaaatactatcaaaagttattgaggtttgaaa
aaacactgccagctaatttgaaatatactttaattttctatttttcttca
tATGTTTATTATAGAATCAGGACTTCTAATCACTTGTGGCGCTAACTCAA
GCTACCAGTTGGGTTACGAGAGGCAAGAAAATGATTTACGACCAGGAATT
GTTGAATTATCGAGACAGAATCCGATACATTTGATGGATTGCGGTGACCT
ACATACTGTGGTTGTCACTTCTGGTACGACATTGACTTTAAGTGTGCGCT
CTTTCTCTTTTGCTGCGTGGAAATGTTAACatgaaaaataagtttaaaaa
aatattgttaaaggttttcttaattttacataagtgttcccgcttcatat
cagacatatatttcatatcaggacaatgtcttgctattattatattatgc
tgatataagcaaaaaatgtttttctttttctctttctgacaAATCTtgtt
ccacatccgtgtcaatccaatgttagaaagcttttgaattaaaattgatg
agtaagcaaacgatatcactcttatttaaaaacaaaacctttaaacccaa
aaagtgaaattttggaCCTCCCTCTATAAAGTGCTATATGTGCGTTGTGT
GTGCATTTTTGCTTGGGCTGGTTATATCATGAAATAGTCTGGAGTACTCT
GCCTTTTTGCTTCTTTTAGACGATCAGATCTACAGTTTTGGTAGTAGCCG
CCACGGGCGTTTAGGGCGCCGAACGGATGAAGACTATACTTGGAAACCAC
AGCTGATTGAAATCgaagaaaatgacgtcacaatacAATCACTTTCAGTT
TCGCACCGAACGACGCTGTTGGCTGGAAAAGGTACGATTATAACGTGAAT
GCGTGGGTTTAACCCAAAAAAAGGGCTAGATATTCCATCCACTATTCCAA
ATACGTTGCAAAGCTtaatacttttttctttttcttgcttgggtTGAATA
TTTCACTCTAGACCGTGGTCTATGATTCCTTCCTGGTCTCTTTTGCATAC
CATTTTAACAGTAGGCACAGATTATTTATAAACATTGAAGTAAAAGTGTT
ATTAAATTTATTCTGATTTGGTCACAGACCTCTACACATATACTTTCTAC
ATGGAAACTTTCTTCTATACTTCCCATAGCACTTTGAATATCTGTTAGCG
GTACAAAGATTTCTGAAAATACAAGTTATTACattacacaggaaaaaaat
tttgatcccCTAGGCTATGGCAATGTAtatttccagatctggaaatcTGG
ATTTTTCCTTAACCAATCCCTAGCTAGGGAAGGTGCAACAGCTCTCTTGT
TAGTTATGTAAAGTAGTTTTGGNAATCTGGATTTTTCCTTAACCAATCCC
TAGCTAGGGAAGGTGCAACAGCTCTCTAGTTAGTTATGTAAAGTAGTTTT
GGCTCAGTTTGctaataagaaaatttgaaaattcatgtggttgaaattat
tttactttttttcagttCACAACGCTTCAACATTGACTCCGATGAACTAT
TAAGGCTGGTCATTGGTCATTTTCACTGGTAAGTCAGCAATATTTTGTTT
TCgataaaaatgatataaaaaatatcaataagtgATAGATGATTCCATCA
AAGAGTGCTCGATGATCAGGACCAGAGCTTCATACAgtgtacaagaaaaa
acaaaatttgaattgtagtactttaagtttcatcTTTATCGAATCGTCAG
ctatcaaatgaaaaatgacaaatgtACACTGCAGAAAGAAAAATGATTAG
TTCCAATAATCAAGAGGAAATTGGTTTTTGAGCCTTGAGTTCAATGGATA
TTAAATGGAAGAGCAACATTTATCAATATCAGCATCTTTGTCACAACATT
TCACGAACGTTCAATGAATGTAGTATGAACATCAAATGACACCCGAAGAA
CGCTTTTTAGTGAAACGAGTATATtttcacttttgaggacggcagaTTGA
CTGAAACGATTTGTAACAGCTCGCAGTTTTGGCTCGCGAAATCGAGGACG
GTGAAactgctgatttaccgtcgtcctcagtcagagTCAAATCAGAACAC
ATATATGTACACAACCTCGTTTTTATCTAAACGAATGGATTTTTTGTTCC
ATAAATGTGACTTATCTACTTCTTTTTTGTGGAAACTGGAAATTATTGTG
ATGATCGACCTCGATGAGTGAAGTCTGCTTAAATATTCGATGTTGGATTG
CCTAatacaaatgaaaaatattgaataaaagaCAGGGAAATAAATATCAT
ATACACCATTCAGGAtactaaaataaattaaatatttttttgaactaATG
TTAAAATCTGTCAAAATGGCGTCTTGTTTGGCGGTCCATTTTCAAGTTCC
TGCAATACATGTAGATAGAATGTAGTTTGTGAGCGCGTGACGTTATTCAA
TATATcttaaaggaagaaactttGACTGAACGAAAATTTAGCGAATTTGG
CGGATTCGACGGATTtacgcaaaaatttcttatttccaCCATCCGCCCAA
TTAAATTCCTTCTAAATTTTATTTAGTTATGTATTTTCGAAATTTGTATT
TCCGGGAGCgggttttttgtttctttaacaACAGTTTTTTACCGAAGGTG
TGTCCTTCAACCGCCTTCACTCTCCTACATAGGATcgttacaaaaagaaa
aatgaggaaaagtatgcaaaatttttacaaacattTTTAGCTATGCAAAC
CAATGTTTTTTAGATGCATTTTAATTTTtcgcatttttttt

Coding sequence (CDS) from alignment at sc0000306:188971..195511+

>TCONS_00018778 ID=TCONS_00018778|Name=TCONS_00018778|organism=Clytia hemisphaerica|type=CDS|length=6111bp|location=Sequence derived from alignment at sc0000306:188971..195511+ (Clytia hemisphaerica)
ctAGATCAAGGTATTCTGATGACTTGGGGCAGCGGTGAAGATGGTTGCCT
TGGTCACGGAAACACAAATGACGTCAGCCATGCCAGAGTTGTAGAAGATC
TTGTCGGTTCAACAGTGGCACAGATTTCGTGCGGTTCCGCCCATATGATG
GCTTTGACCActGAGCAACAGGTGTTTGTATGGGGACGAGGCTCTCATGG
CAACTTTGGCTTGAACGACCGTCACAATAGATGTAATCCAACCAATGTCC
CGTTGCCCATGGATACGAAGCCTAGATCCGTTGTCTGCGGAACAGATTGC
TCTTTCATTATTACTGATAAAGGGGCTGTCTATGCTTGTGGAAACAATAG
AAACAACAAGCTTGCATTACTCACAGACAATGAATTAAAGAAaggcaatt
tttcaaaagtggaaAATGATTGCCTCGTTTTCAAGAAGGTCACATGTCAC
CCCATATGTGAGCATCGCATTATTTCCATAGCAACCGGTCCAACCCATTC
TTGTTTCTTGACTGAATCAGGACTTCTAATCACTTGTGGCGCTAACTCAA
GCTACCAGTTGGGTTACGAGAGGCAAGAAAATGATTTACGACCAGGAATT
GTTGAATTATCGAGACAGAATCCGATACATTTGATGGATTGCGGTGACCT
ACATACTGTGGTTGTCACTTCTGACGATCAGATCTACAGTTTTGGTAGTA
GCCGCCACGGGCGTTTAGGGCGCCGAACGGATGAAGACTATACTTGGAAA
CCACAGCTGATTGAAATCgaagaaaatgacgtcacaatacAATCACTTTC
AGTTTCGCACCGAACGACGCTGTTGGCTGGAAAAGttCACAACGCTTCAA
CATTGACTCCGATGAACTATTAActAGATCAAGGTATTCTGATGACTTGG
GGCAGCGGTGAAGATGGTTGCCTTGGTCACGGAAACACAAATGACGTCAG
CCATGCCAGAGTTGTAGAAGATCTTGTCGGTTCAACAGTGGCACAGATTT
CGTGCGGTTCCGCCCATATGATGGCTTTGACCActGAGCAACAGGTGTTT
GTATGGGGACGAGGCTCTCATGGCAACTTTGGCTTGAACGACCGTCACAA
TAGATGTAATCCAACCAATGTCCCGTTGCCCATGGATACGAAGCCTAGAT
CCGTTGTCTGCGGAACAGATTGCTCTTTCATTATTACTGATAAAGGGGCT
GTCTATGCTTGTGGAAACAATAGAAACAACAAGCTTGCATTACTCACAGA
CAATGAATTAAAGAAaggcaatttttcaaaagtggaaAATGATTGCCTCG
TTTTCAAGAAGGTCACATGTCACCCCATATGTGAGCATCGCATTATTTCC
ATAGCAACCGGTCCAACCCATTCTTGTTTCTTGACTGAATCAGGACTTCT
AATCACTTGTGGCGCTAACTCAAGCTACCAGTTGGGTTACGAGAGGCAAG
AAAATGATTTACGACCAGGAATTGTTGAATTATCGAGACAGAATCCGATA
CATTTGATGGATTGCGGTGACCTACATACTGTGGTTGTCACTTCTGACGA
TCAGATCTACAGTTTTGGTAGTAGCCGCCACGGGCGTTTAGGGCGCCGAA
CGGATGAAGACTATACTTGGAAACCACAGCTGATTGAAATCgaagaaaat
gacgtcacaatacAATCACTTTCAGTTTCGCACCGAACGACGCTGTTGGC
TGGAAAAGttCACAACGCTTCAACATTGACTCCGATGAACTATTAActAG
ATCAAGGTATTCTGATGACTTGGGGCAGCGGTGAAGATGGTTGCCTTGGT
CACGGAAACACAAATGACGTCAGCCATGCCAGAGTTGTAGAAGATCTTGT
CGGTTCAACAGTGGCACAGATTTCGTGCGGTTCCGCCCATATGATGGCTT
TGACCActGAGCAACAGGTGTTTGTATGGGGACGAGGCTCTCATGGCAAC
TTTGGCTTGAACGACCGTCACAATAGATGTAATCCAACCAATGTCCCGTT
GCCCATGGATACGAAGCCTAGATCCGTTGTCTGCGGAACAGATTGCTCTT
TCATTATTACTGATAAAGGGGCTGTCTATGCTTGTGGAAACAATAGAAAC
AACAAGCTTGCATTACTCACAGACAATGAATTAAAGAAaggcaatttttc
aaaagtggaaAATGATTGCCTCGTTTTCAAGAAGGTCACATGTCACCCCA
TATGTGAGCATCGCATTATTTCCATAGCAACCGGTCCAACCCATTCTTGT
TTCTTGACTGAATCAGGACTTCTAATCACTTGTGGCGCTAACTCAAGCTA
CCAGTTGGGTTACGAGAGGCAAGAAAATGATTTACGACCAGGAATTGTTG
AATTATCGAGACAGAATCCGATACATTTGATGGATTGCGGTGACCTACAT
ACTGTGGTTGTCACTTCTGACGATCAGATCTACAGTTTTGGTAGTAGCCG
CCACGGGCGTTTAGGGCGCCGAACGGATGAAGACTATACTTGGAAACCAC
AGCTGATTGAAATCgaagaaaatgacgtcacaatacAATCACTTTCAGTT
TCGCACCGAACGACGCTGTTGGCTGGAAAAGttCACAACGCTTCAACATT
GACTCCGATGAACTATTAActAGATCAAGGTATTCTGATGACTTGGGGCA
GCGGTGAAGATGGTTGCCTTGGTCACGGAAACACAAATGACGTCAGCCAT
GCCAGAGTTGTAGAAGATCTTGTCGGTTCAACAGTGGCACAGATTTCGTG
CGGTTCCGCCCATATGATGGCTTTGACCActGAGCAACAGGTGTTTGTAT
GGGGACGAGGCTCTCATGGCAACTTTGGCTTGAACGACCGTCACAATAGA
TGTAATCCAACCAATGTCCCGTTGCCCATGGATACGAAGCCTAGATCCGT
TGTCTGCGGAACAGATTGCTCTTTCATTATTACTGATAAAGGGGCTGTCT
ATGCTTGTGGAAACAATAGAAACAACAAGCTTGCATTACTCACAGACAAT
GAATTAAAGAAaggcaatttttcaaaagtggaaAATGATTGCCTCGTTTT
CAAGAAGGTCACATGTCACCCCATATGTGAGCATCGCATTATTTCCATAG
CAACCGGTCCAACCCATTCTTGTTTCTTGACTGAATCAGGACTTCTAATC
ACTTGTGGCGCTAACTCAAGCTACCAGTTGGGTTACGAGAGGCAAGAAAA
TGATTTACGACCAGGAATTGTTGAATTATCGAGACAGAATCCGATACATT
TGATGGATTGCGGTGACCTACATACTGTGGTTGTCACTTCTGACGATCAG
ATCTACAGTTTTGGTAGTAGCCGCCACGGGCGTTTAGGGCGCCGAACGGA
TGAAGACTATACTTGGAAACCACAGCTGATTGAAATCgaagaaaatgacg
tcacaatacAATCACTTTCAGTTTCGCACCGAACGACGCTGTTGGCTGGA
AAAGttCACAACGCTTCAACATTGACTCCGATGAACTATTAActAGATCA
AGGTATTCTGATGACTTGGGGCAGCGGTGAAGATGGTTGCCTTGGTCACG
GAAACACAAATGACGTCAGCCATGCCAGAGTTGTAGAAGATCTTGTCGGT
TCAACAGTGGCACAGATTTCGTGCGGTTCCGCCCATATGATGGCTTTGAC
CActGAGCAACAGGTGTTTGTATGGGGACGAGGCTCTCATGGCAACTTTG
GCTTGAACGACCGTCACAATAGATGTAATCCAACCAATGTCCCGTTGCCC
ATGGATACGAAGCCTAGATCCGTTGTCTGCGGAACAGATTGCTCTTTCAT
TATTACTGATAAAGGGGCTGTCTATGCTTGTGGAAACAATAGAAACAACA
AGCTTGCATTACTCACAGACAATGAATTAAAGAAaggcaatttttcaaaa
gtggaaAATGATTGCCTCGTTTTCAAGAAGGTCACATGTCACCCCATATG
TGAGCATCGCATTATTTCCATAGCAACCGGTCCAACCCATTCTTGTTTCT
TGACTGAATCAGGACTTCTAATCACTTGTGGCGCTAACTCAAGCTACCAG
TTGGGTTACGAGAGGCAAGAAAATGATTTACGACCAGGAATTGTTGAATT
ATCGAGACAGAATCCGATACATTTGATGGATTGCGGTGACCTACATACTG
TGGTTGTCACTTCTGACGATCAGATCTACAGTTTTGGTAGTAGCCGCCAC
GGGCGTTTAGGGCGCCGAACGGATGAAGACTATACTTGGAAACCACAGCT
GATTGAAATCgaagaaaatgacgtcacaatacAATCACTTTCAGTTTCGC
ACCGAACGACGCTGTTGGCTGGAAAAGttCACAACGCTTCAACATTGACT
CCGATGAACTATTAActAGATCAAGGTATTCTGATGACTTGGGGCAGCGG
TGAAGATGGTTGCCTTGGTCACGGAAACACAAATGACGTCAGCCATGCCA
GAGTTGTAGAAGATCTTGTCGGTTCAACAGTGGCACAGATTTCGTGCGGT
TCCGCCCATATGATGGCTTTGACCActGAGCAACAGGTGTTTGTATGGGG
ACGAGGCTCTCATGGCAACTTTGGCTTGAACGACCGTCACAATAGATGTA
ATCCAACCAATGTCCCGTTGCCCATGGATACGAAGCCTAGATCCGTTGTC
TGCGGAACAGATTGCTCTTTCATTATTACTGATAAAGGGGCTGTCTATGC
TTGTGGAAACAATAGAAACAACAAGCTTGCATTACTCACAGACAATGAAT
TAAAGAAaggcaatttttcaaaagtggaaAATGATTGCCTCGTTTTCAAG
AAGGTCACATGTCACCCCATATGTGAGCATCGCATTATTTCCATAGCAAC
CGGTCCAACCCATTCTTGTTTCTTGACTGAATCAGGACTTCTAATCACTT
GTGGCGCTAACTCAAGCTACCAGTTGGGTTACGAGAGGCAAGAAAATGAT
TTACGACCAGGAATTGTTGAATTATCGAGACAGAATCCGATACATTTGAT
GGATTGCGGTGACCTACATACTGTGGTTGTCACTTCTGACGATCAGATCT
ACAGTTTTGGTAGTAGCCGCCACGGGCGTTTAGGGCGCCGAACGGATGAA
GACTATACTTGGAAACCACAGCTGATTGAAATCgaagaaaatgacgtcac
aatacAATCACTTTCAGTTTCGCACCGAACGACGCTGTTGGCTGGAAAAG
ttCACAACGCTTCAACATTGACTCCGATGAACTATTAActAGATCAAGGT
ATTCTGATGACTTGGGGCAGCGGTGAAGATGGTTGCCTTGGTCACGGAAA
CACAAATGACGTCAGCCATGCCAGAGTTGTAGAAGATCTTGTCGGTTCAA
CAGTGGCACAGATTTCGTGCGGTTCCGCCCATATGATGGCTTTGACCAct
GAGCAACAGGTGTTTGTATGGGGACGAGGCTCTCATGGCAACTTTGGCTT
GAACGACCGTCACAATAGATGTAATCCAACCAATGTCCCGTTGCCCATGG
ATACGAAGCCTAGATCCGTTGTCTGCGGAACAGATTGCTCTTTCATTATT
ACTGATAAAGGGGCTGTCTATGCTTGTGGAAACAATAGAAACAACAAGCT
TGCATTACTCACAGACAATGAATTAAAGAAaggcaatttttcaaaagtgg
aaAATGATTGCCTCGTTTTCAAGAAGGTCACATGTCACCCCATATGTGAG
CATCGCATTATTTCCATAGCAACCGGTCCAACCCATTCTTGTTTCTTGAC
TGAATCAGGACTTCTAATCACTTGTGGCGCTAACTCAAGCTACCAGTTGG
GTTACGAGAGGCAAGAAAATGATTTACGACCAGGAATTGTTGAATTATCG
AGACAGAATCCGATACATTTGATGGATTGCGGTGACCTACATACTGTGGT
TGTCACTTCTGACGATCAGATCTACAGTTTTGGTAGTAGCCGCCACGGGC
GTTTAGGGCGCCGAACGGATGAAGACTATACTTGGAAACCACAGCTGATT
GAAATCgaagaaaatgacgtcacaatacAATCACTTTCAGTTTCGCACCG
AACGACGCTGTTGGCTGGAAAAGttCACAACGCTTCAACATTGACTCCGA
TGAACTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010515XLOC_010515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018778-exon-sc0000306-1491911889:188971..189130TCONS_00018778-exon-sc0000306-1491911889:188971..189130Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1510915933:188971..189130TCONS_00018778-exon-sc0000306-1510915933:188971..189130Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1575043694:188971..189130TCONS_00018778-exon-sc0000306-1575043694:188971..189130Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1491911889:189511..189549TCONS_00018778-exon-sc0000306-1491911889:189511..189549Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1510915933:189511..189549TCONS_00018778-exon-sc0000306-1510915933:189511..189549Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1575043694:189511..189549TCONS_00018778-exon-sc0000306-1575043694:189511..189549Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1491911889:190442..190592TCONS_00018778-exon-sc0000306-1491911889:190442..190592Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1510915933:190442..190592TCONS_00018778-exon-sc0000306-1510915933:190442..190592Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1575043694:190442..190592TCONS_00018778-exon-sc0000306-1575043694:190442..190592Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1491911889:191318..191481TCONS_00018778-exon-sc0000306-1491911889:191318..191481Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1510915933:191318..191481TCONS_00018778-exon-sc0000306-1510915933:191318..191481Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1575043694:191318..191481TCONS_00018778-exon-sc0000306-1575043694:191318..191481Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1491911889:192835..192993TCONS_00018778-exon-sc0000306-1491911889:192835..192993Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1510915933:192835..192993TCONS_00018778-exon-sc0000306-1510915933:192835..192993Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1575043694:192835..192993TCONS_00018778-exon-sc0000306-1575043694:192835..192993Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1491911889:193440..193601TCONS_00018778-exon-sc0000306-1491911889:193440..193601Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1510915933:193440..193601TCONS_00018778-exon-sc0000306-1510915933:193440..193601Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1575043694:193440..193601TCONS_00018778-exon-sc0000306-1575043694:193440..193601Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1491911889:194236..194298TCONS_00018778-exon-sc0000306-1491911889:194236..194298Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1510915933:194236..194298TCONS_00018778-exon-sc0000306-1510915933:194236..194298Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1575043694:194236..194298TCONS_00018778-exon-sc0000306-1575043694:194236..194298Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1491911889:194471..195511TCONS_00018778-exon-sc0000306-1491911889:194471..195511Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1510915933:194471..195511TCONS_00018778-exon-sc0000306-1510915933:194471..195511Clytia hemisphaericaexon
TCONS_00018778-exon-sc0000306-1575043694:194471..195511TCONS_00018778-exon-sc0000306-1575043694:194471..195511Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018778-proteinTCONS_00018778-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000306supercontigsc0000306:188971..195511 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.32987	1.39236	0.676597	0.605491	11.5261	9.40107	10.4399	12.741	10.9247	11.2629	9.1178	9.2555	6.05289	6.97777	3.89958	4.70318	4.71963	4.40828	2.74669	3.65872	2.50657	3.15396	2.24363	2.45683	4.93676	6.04222	3.50907	2.46342	3.21098	2.18155
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
Blast
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BLAST of TCONS_00018778 vs. Swiss-Prot (Human)
Match: NEK8 (Serine/threonine-protein kinase Nek8 OS=Homo sapiens GN=NEK8 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.625e-52
Identity = 109/278 (39.21%), Postives = 164/278 (58.99%), Query Frame = 1 
Query:    4 DQGILMTWGSGEDGCLGHGNTNDVSHARVVEDLVGSTVAQISCGSAHMMALTTEQQVFVWGRGSHGNFGLNDRHNRCNPTNVPLPMDTKPRSVVCGTDCSFIITDKGAVYACGNNRNNKLAL--LTDNELKKGNFSKVENDCLVFKKVTCHPICEHRIISIATGPTHSCFLTESGLLITCGANSSYQLGYERQENDLRPGIVELSRQNPIHLMDCGDLHTVVVTSDDQIYSFGSSRHGRLGRRTDEDYTWKPQLIEIEE-NDVTIQSLSVSHRTTLLA 828
            D+GI+MT+GSG +GCLGHG+  D+S   +VE L+G  + Q++CG++H++AL+TE+++F WGRG  G  GL  R +   P  VP+P   + + VVCG D S I+T  G   ACG+NR NKL L  L+  E +     +VE + L F  +   P+ +  ++SI  G  HS  +T SG   T G+N   QLG   +     P  V+      + ++ CGD  TV + ++ ++YS+G    GRLGRR DED    P+ ++++E +  T+ S+S  H  TLLA
Sbjct:  408 DRGIIMTFGSGSNGCLGHGSLTDISQPTIVEALLGYEMVQVACGASHVLALSTERELFAWGRGDSGRLGLGTRESHSCPQQVPMPPGQEAQRVVCGIDSSMILTVPGQALACGSNRFNKLGLDHLSLGE-EPVPHQQVE-EALSFTLLGSAPLDQEPLLSIDLGTAHSAAVTASGDCYTFGSNQHGQLGTNTRRGSRAPCKVQGLEGIKMAMVACGDAFTVAIGAESEVYSWGKGARGRLGRR-DEDAGL-PRPVQLDETHPYTVTSVSCCHGNTLLA 681
The following BLAST results are available for this feature:
BLAST of TCONS_00018778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEK86.625e-5239.21Serine/threonine-protein kinase Nek8 OS=Homo sapie... [more]
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