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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018777 ID=TCONS_00018777|Name=TCONS_00018777|organism=Clytia hemisphaerica|type=transcript|length=274bp
aagaaaaataaagaaaaataaattgaaaataatgacTAAAAGTAGTTTAA
AAAAGGCTGGAGAAAATGGAGTAAACTTGACACACGACAAAATGACCATA
GAATGAAGATTATTCTCGATCATACAAACTTACATTGTGGTTTATGAAGA
AGAATTAATCGAGGCAAAAATGGGAATGGAAAAGTATGATAGAGAAACGA
AGAAACTTGTTGGGCGTGGCGCTTTTGGACACGTGTACCTGTATCAAAGT
CTTGCGGATCGTAAAGAAATCATC Run BLAST on NCBI transcript from alignment at sc0000306:166991..177490+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018777 ID=TCONS_00018777|Name=TCONS_00018777|organism=Clytia hemisphaerica|type=transcript|length=10500bp|location=Sequence derived from alignment at sc0000306:166991..177490+ (Clytia hemisphaerica)
aagaaaaataaagaaaaataaattgaaaataatgacTAAAAGTAGTTTAA
AAAAGGCTGGAGAAAATGGAGTAAACTTGACACACGACAAAATGACCATA
GAATGAAGATTATTCTCGATCATACAAACTTACATTGTGGTTTATGAAGA
AGAATTAATCGAGGCAAAAATGGGAATGGAAAAGTATGATAGAGAAACGA
AGAAACTTGTTGGGCGTGGCGCTTTTGGGtaagattattattattattat
tatcaatttattttcagttggtaACAACGATAGGACCTAGCGTCCTAAAT
AGTTACAGCCGTGACCGTTTACTAATAAATTCCCAACTTTCATAAAAATA
GCTATTTACCACAATTTACATAATGGACAAGTACAAAAATTATCTGGAAG
CATTTTTAGCTTTCCCCTAAAAATATTAAATGTTGCAGAGCTTTTGACAT
CCTTTGGGAGACGATCCCAGATTAAAGAGCCGACAAAACTCAAAGATTGC
AAGCCGAACTTGACAGTGTTTGCTGAACCGAAGGAttttaaatcatttta
tttttattaatatTTATTTAATGAATTCCCCTTTGCAGGCATTTCTGCCT
CTCTGAAAGGATCTTTGATCTCACCAGAATGGATACTCTTGGTACACAGG
GTTATAAATTTGTTTTATCCTAATTAAATTTCGTGATGATGGATGAGTAA
AAAGGGACAAGTGTGATTCGCATAAAAGCTTCCCCTTTTTAATCACTCAG
TAATTGCAAATCATATTCAAAACTCGAAAAATGCTTCGCAAACACTTAAG
CCTCGCTCGCATTTTTTTGGCGAAGCTCTTAAAATTTATAATCCGAACCC
TAAAGCCATCTAGCATGCTAGGCTACGGTTTTCTGAATTCAAAAAGCCAT
GCTTAACCCTTTCCATACCCATGTCAAGTATATTTAACGCCCACGTCAAG
TATATTTGATATACATGCccaaaatacttttttcattttctcccaCCGAA
AACAACTGCATCGcctcgaaaatttttgcaattttttttgccattttttc
acCTCGTGGGCACGGAAAGGCTTAAcgctcataatttttttatctaCTGT
TTTTCAGTTCAGTTCAACCTTTTGTTTCTGAAAAAAAGGTCgataaatat
attttgaaaaatatcgtGCCTAAGTCTACTGTTTGTTGATGTCAAAAATA
CAGTATAACTCACATCGCAAATTGTCTGCACAATTTCGGCTATCGGAggt
tgagcctgaaattactcaatttcaagcaacttAGCggttaaagtaataaa
aattgggtataacgcctaaaatacctcaattacaccctataataagaaca
ggataagaacaatttgaggctcaaagtgccaaaaataaataagaacGGCC
GagcttaagaaaaattttactggttcttataaaaacttaaAAGTCTAGTT
TAAAGAGTCagtgtagcctggatatccaggctgtaaactatttcacagtc
tagtttttgatattttatgttctggtttacagcctggtctccctagagcg
ttttACATTCTCATATGAGAACGCAGtctgcttgcgctcacttcgctaaa
gccgtaaggactGATCTACATGGTGCGGAGCGATTCTGACACAAAAACAG
GATAatcctccacttgctagtgaagatacagctttacatgaaaacatgaa
aaagaagaaacagagGTGAGACttttattttctaagaaaacatggttggt
catgttAATGCGTGCAAACATGTTTATTGGACTCTattgtaatctttgga
tgttttaaatggttttagatcttgtgtaaggctgcttttattaagttctg
ttttgctgccctgggttggctaggaaagttttggaaacatgggtttgcac
tttcattctctagggagaccaagctctataattttagaactttgtatatG
TTGAGgtagattttgttttttctaaaaatttgagcttggatatccaggct
agagtCAGTGATGTGAGTGGAGGACGAagatgttttgaataatttgactg
GTCGAAATATCAAAGCTTTAATGGACAAAAAGGAACCTAACTTTTAAGGA
AAAACCAAAGAGAAAACAGAGAACAGAAAATGTAAAAGGAAACACCAATT
CTTGAACTTAAAGAAACCTAAAATGCTACAAAACCACAAAGAACCGAAAT
Aagataacctgataacagctgttcataattttcttacgcgcacggtaaac
ctctgaacaGTAAACTTTTATCAGATAGAATAATATCTCACTTTGGCTAC
TTTATCATCCATTCACTCAGATtccctttgttaaaagtgattattggtcg
taaaaacagtttctcaaaaactgatgcgtggatagaaatctctttataag
ggtatgtttgcacggtattttttctcggttacgaaatttttagttttgga
aaacgattgatatttacaaatctattttagCTTACAATCTGGAATTTTAA
GAGCTGAAATTTAGTGATTCCATCGATTTCAactcctaaaattaaaaaat
caattttagtctATACGGACATAATAACTAATTTAAgtgaaaacttgaca
cccaaatttcttttcttcgaagtgcgttttcaaatagttttcaacactgt
tgaatctataaaatgagctgatttcaaatatgtaattcttatttgcattg
aggggggggggaccaatgaagtataagcccgaagggctagaagtcaatct
ccttggtaggatttgaagccaacaaatcctaccaaagttacgcggccttg
agcggcccgcctggtttttacacaaatgacagattgaaactaaaatttac
cgctaaatttcgaaaaaaatatcaatcgtaaacaaaggaattgctagatt
caatctgtcgtcaaaaatgcggcgcatttttaaaggcttcactttttctt
gcctgagaaaggttagagattgaactctagcccttcgggctttaaactca
atgggggGGCCGAAGTGCCCGAAATTtccagttgaaaataatcaaattat
gtgcatagttttttgagaattcaaaagaatccaatcaagcatgagaaaat
atgcaattaaaatacgataagaacaaagaaatgaaattatcaTTGCACAT
GTGCATTTGAATTCCCATTGCAACTAAGGGACCCCTTACAGACACGCttc
attttaaggaaaaagcatgaattcattctatctgataataattctatgct
ctgaaggcgcttgaaaattatacatctgaggaaaatagtcctcccgcgga
aattCTACAGcgagaatcttgttgtgcgccggaaagttaaaaactgatac
ggcgccctattcatgaactcaatcacgcaactttgttgtcattcttagtc
cttttagacgagcgcggtccttacgaccgcatattcgtcagattgtttgt
tttcacacatccctttacagcgtggtgtgcagaaaacattcataACCTGA
TCTCAAGTTAAAACATAAGACGACAACGCATAGTAAATTAAAATTTAGTA
AAACGCACCACTCACACACAAGACGCTCACTCACGTCTCTCAGTGTTGAA
CTGATTTCTATGTACAAAATTACAGTTAATAAACATAACCTAATTTCCCT
ACAGGAATTACAAATGACATATAAAACGCAATTTGGGAATACAAAAGACA
CTCAAAACAAAGGGGACACTAAACGAACGAGGACTCAAGAGACACATGTA
AACTAAAAGACTCTACAGGGAATATAGTCGGaaaatctgccgtatactat
cttcgctttctgatttgagTGATGGCGCTGCGATCTACTTTTTCTCCCAA
TAGAATtagtaaaggcaaaaagtagttgagctccagctcctggactaCAG
GGAATACCAATTAAaacatacagggtgtccctaattaaagtatcgagttt
gaacatgcgattgagtagaaaagtttgtgtgtgttatcgctaaaatataa
gaacgttctccatcacacaggcttattacaaaaggtagttacaacgtata
aattaatcgtaatgacaaagaaaaaagagggagagtttaaaatacaattt
tgtgaacacgcacataaaactttctactcatagttgtgtttcgactcgat
actttaattagggacaccctgtagaaacATAAACAGAACGGGCAATTAAA
TGTTCATTACGATGAAGCAATTTTCTCCATCAATAAGTGATTTAAATAAG
AGCTTTCTAACGACACATGACGTTAAGGACTGGCATATTTCAATTTGTAG
TTCATATATCAAAAAATCTAGACAATGTGATATAGCATTTTGTAGACTGT
GAAAGTGTTCATAggaattgggcttttccagaaagaaattttgcccccac
tgttgaggatattgatttttcgaagtatcgaaccccctggatatcctact
ttattagttaGGACCTctctggatatccactcttaaaaatatgctcaacc
ccctggatatcctctcttataaagatgcttacctacccctggatatcgta
ttttttacttgaaaagacactttggATATCCGCTCCTGTGTAGATATTTA
AACCCCTTGGATATccacttttaaacaaaaatcgttaaccccctggatat
cccatatcctcaacaggagggggcacggactatttctggaaaagcccatt
gatTGGCACTCTTTTTCATGTGTTGTCATGCTACTGAAATTCGACACttt
ttaaagtgtttttattGCAGATTACATTATGATTTACAGTATTTGAGTAT
TTGAAAAGAGGTTGTTGACTTTTCATAATGTCTTAGTGTATTTTTAGTAC
AAACTCTACCTTCTCAGCATTTTATTTTGTGGCTTTACAGTCAGTTTTAT
GTTGGGAAGCAGAATTGTGTGAGTTATTCATCGTTGACAGAATCAAATAA
GAAATCAGATCATCACATTTTGGACAATCTCGAAATTTCAATCTTATCTA
TAACCGGGTCGTATTAAGTTGGAAAACAGAATTATTTTGGTTATTCATCG
TTAACAGACTCAAACAAAAAATGAACGAAGCACACAGCTCAGTTGACCGC
GAACGAACGATTCTTGAAGAAAACCGAAAACTGAAGCAAGAAAATGTTGA
ATTGAggacaaaatatgaaaaagagactttggaaaacaaaataaaaaatc
ttgaaatgaCAAATGAGATACAAACACTCCAACACCTAATGGAAATTATC
AAGTTAAAATCGCAACAGGAGAGAAACGAAGCTGTGAGCTCATCGGAAAG
CGctttaaaagaagaaaacttACGTCTGAAAGAGGAAAATGGATCACTGA
AACATCAGATAGAAATTACCAACATAAAGATGCAGCAAAAAGGACAAAAC
AACCTTGACAATGAGAAAGTGAAAGAAATTGACTCACTCAAGAACGAAAT
CAAATATTTGAAGGACCAGTTTCAAGCTCTGGAAAAGGCGACCTCAAAAG
GTGATTTAGAAAAGAACGTTTTAGCTCTTGGTGAAGAAATAGATAGGTTG
AAAACTCAATCCAATGATACCATTAAACAAATTCAAACACAAAAGAGCCA
ATCAGATGCTGTATTCCAAACTCTAAGGAAAGAATGCGAAGATTTAAAAC
TTCATTTAAATATCCTCGACCAATCACGCAACGACGATGATGATGTAAAA
AAGGAGGTCCAAACTCTTAGAAACGAGTTTGGGATTTTCAATGCCAACAT
CGAGCGAAAACTGTCGCTGGTAAAAATTCCTGATCGATTTTTCGAAGGAG
CTGAACGGTTTTTGGTGAATTACAATACAGAGGACGGAGATTACAAATTG
TGGTATGAAGATATGTCACGTTCTATGGAAAATCGTAAGCAGTATGCCAA
TGAAAAATTCGTCTTGATTcgtaaagaaacaaaaataattggTAATATAG
CTCTGTGGTTTGCATCGAAATCAAAAGGTGTTGAATATGATGAAGAAGAT
TATCATTTGATAACTGAAGGGTTGTATGAAAAAACACCTGCTGATGCAAA
CGTTTTTCTTCTCCATCCAAGCGATTATAGAAAGTGCTTCAAGATGGTAT
TCTCTAATACTTTGTACACTAATATCAGATGGTGGTGGTCTGGCGGAAAC
GCTTCAAAAGATTTCAGATTTGGAGATACTTCTTCAGTTATTATGCTTGC
TGAATTTAAATGACGtacaggttttttttataagaacatccaaaattttt
gaagcctttggacgttcttaactttttgagttttaagccaaaaaaagttc
taaaatgttcttaattttcaccattttgtgagtgtttttgtgcaatttcc
aaCATTTTCCTACAAAATTGGTTGTCcataaaaccttaaaaagtccttag
cttgttcttaatatttcagtCATCCAAGCTTTATATTCTTATGTAAAgtt
tgtctcaaaataatttgcagctgagacaaaaatttgaatcaagttgcgat
ttttgCGAAGTTGCGacatgtttgttttgataaaaaacatgtaaaatgtt
cttaacttgttctcaagattttggccattgaagccttatgttcttatata
aagtTTGCCTCAAAATAaattgcagctgagacaaaaatggctgtaacatt
tgatattagaatttgaatcaagttgcgattttgcgcaaagtttgttattg
gttgatcgacaaaaggctgttttttgtcgttttttactactttatagagt
caaccagcaataaactttgtttgctatcttttgattgaatgaatattttt
gaaaatttttttcacagtgatttactctaggggctgatttactctagggg
ctgagttaggtctcgtatgcacatcggcgtatagtcattttttcttttga
tcatgaaaatATAGTCCTTGCATAGtgtgtacccccccccccccccNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcttatttt
cagattttatgattttatgatatatttttttatatatttcataaatgtat
ataatagacatattaatatattttggatttaacacaggttaaatagcggt
ttaacttttatttgataagcgctatatacagtattcgaatggctgggtgg
ccgccctccgccaactgagtctactttgctaatagTCATTTGACGTCATG
TTCAAAATGGCCATCACATCTCCCTGTTCAAGTCGAcgctctaactgaaa
gctgacaggatgaaatattttccctccctccctccctgcagttatggttg
taggcgatcctcacttatttatactaatattgtaGTTATCGGGACAAATC
TTCCCCAAAACttcttattcgaggattagccataatttCATACCAAACTT
ATATCTATAACGACTCACACTTACTTCTAAGCCGTCTGActacttgattg
gtttctacccctaatgtaggtcataggcaaatggaaagttaaacatATGT
AATATATTGCATCTTCATATTACGGTAAAGAAATTTGGTTTGgttcctcg
aattagtatattttttttgtttttagctgggatctgggagtctgggctga
aggtgggaattttaggataaggtgggacctgaattttcaggtgggacctg
atggaacccccttgcacactatgccttgaagagtcagaaaacgtgtgtgg
cgttatttggatcaggcacaactttccataatggcggattttagattttc
aaccctttttaaccctcttgcttgaaaaaaattttttttaaactttaaac
atagacatattatgctgattaagaaaaatgtcagaaccatggtctgaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcgg
agggtcttgcctaccgttcaaataataaaattcaggaaaatttatttttc
tacataaatttcgaaatccataatggcggattcaaaactttctttcgtca
catgggctcttaggctctgctagcctttttttgagcttaaaaccctgcat
actataaaccaatcgatcagaaattttatgctgattaagaaaaaggtcag
aaccattgtctgaaaattttgctatctcgagctatgaagtactttcgttt
tcaaacttagaaaacgtaataagtacttcgtatctcttgacaattttttc
aagcaagagggctaaaaagagttgaaaatctgaaatccgccattatggaa
atttgtgcctgatccaaataacgccacacacgttttctgactattcaagg
actatactttcatgatcaaaagaaaaaatgactatacgccgatgcgcata
cgggacctaaaactcagcccctagagtaattgaaaaatcactcctgtgaa
aatgataattataccacatttctacaagaagttgatttttttcttcttca
tttttcattttcatttttctttttttttctttttttctttttttgcttga
taatattccactcacaaatatcttttgaacaagcacaaaatcgcaacttg
attccaattctatcaaaagttacagccatttttgtctcagctgcaaatta
ttttgagacagactttagtttatttttataaaaaacgtgtaacatggtat
catttaaattttttttctccatgtTTAAGGAGTGTTACCCTTCTTGAATG
TGAGCCATTGAAGTTGtagtaaaaaacttttaaacttgCCCCAAATAAAG
TCATGTGATAAAAAATGGAATATGGAAAATGTGGGAAAGGGGGTTTCAGA
AAAGTTTGTACTTTGGGAAAGTAGTTAAGCTGCGAATCTCTCAAACCGAA
AGTAGTCAGTCTTCTTCACGGCGTTCCAGCTTTACACTTCAAACAAGTAC
AATTTAAAAGGTCATgcatattttagattttttcttaagGTAAAAAATAA
GTGGACTGTGGTAGCCAGTTGACGTGATAACCAAGTTGGCATGAATTTCG
ACTCTGAGCACTAATTAAACAAAATCTATGGCGTTTTAAAGAAAATCAGG
TTCGGAGGCTTAAATGGGTATCTTTTAGTGTCTAAAAATCCACGATAGCA
GCTAGGGTGCCCAATTTTTAACAGTAATTGGAAAAATGTAAATTTCctca
ataatttttattttttctacttttctatAAAACTtcaattgtaacttttt
ttttccGAATTTATTatggaattaatttttttgtatttttaaatcgcatt
ttttaattaatttgcAGTGTTTTGGAGcttaaatttaaaataatttccaT
TAAATAATAACCAAATAAAAGATTATTGTTTGTATAATGTTTCATCGCCG
AACCTACCATTAGATCCTCTATTGAAAGAGTTTAAATTGCACTCCgaatt
taaaatcattttggAGTGAAATCCCCTGCCAAGTAGataaaagctatttt
atttTTGCTGTATTTTTTCAGCGGCAGAGAGGGTTAGCTTTTGATAAGTC
AAGatcctgatcaactgaggacAACTGTAATCAGCAATTTTTCCATCTTC
GATTTGGCAGGTTCTTCCCAATCGCTTCAGTTACTCCGTCGGCCTCAAAA
GTGTAAATACATAAGCTTGCAAATTCTCAAAGAATAATCATTTTCCTCAT
CATACAGTGCCACGACGCATTCATACAAAGGAATTGATAAAAAACGTTAA
TGTTGATAAAATGATTCTGTAGTGCATAATCAATAGATTTATGAGAGAAT
TAGACCATGTTCGCAAgtaacggttccgtttcgctccgaaacgaaatgaa
accATTCTATtagttagaagtgacgtaaaacttgaatttatccaatagaa
tggcttcatttcgtttttgAGCGAAACGGAACTATAGCGGTTAggccatg
ttcacacgttactgttctgTTTCgttccggtatgattttcgttacggatc
gagtgtgttcatattggtttcggaacgtttcggaggaAGGAAACGGAGCA
GTtctgttccgatgaaaaaagtggagctgttttgctttgtaacgtcttct
tttttgacgtttcgaattttgacgttcacacttgtttcggaaccgtttcg
gaaGGGAACGGAACCTtgacgtctgaacatggtcttggCATGAACATGGA
CTTAAAACTTGAATTTgtccaatagaatggcttcgtTTCGaaacggaacg
gaacggaaccgtaacgtctgaacatggtcttatagttttctcttttttcc
acAGACACGTGTACCTGTATCAAAGTCTTGCGGATCGTAAAGAAATCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018777-exon-sc0000306-1491911889:166991..167218 | TCONS_00018777-exon-sc0000306-1491911889:166991..167218 | Clytia hemisphaerica | exon |
| TCONS_00018777-exon-sc0000306-1510915933:166991..167218 | TCONS_00018777-exon-sc0000306-1510915933:166991..167218 | Clytia hemisphaerica | exon |
| TCONS_00018777-exon-sc0000306-1575043694:166991..167218 | TCONS_00018777-exon-sc0000306-1575043694:166991..167218 | Clytia hemisphaerica | exon |
| TCONS_00018777-exon-sc0000306-1491911889:177445..177490 | TCONS_00018777-exon-sc0000306-1491911889:177445..177490 | Clytia hemisphaerica | exon |
| TCONS_00018777-exon-sc0000306-1510915933:177445..177490 | TCONS_00018777-exon-sc0000306-1510915933:177445..177490 | Clytia hemisphaerica | exon |
| TCONS_00018777-exon-sc0000306-1575043694:177445..177490 | TCONS_00018777-exon-sc0000306-1575043694:177445..177490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000306 | supercontig | sc0000306:166991..177490 + |
Blast
The following BLAST results are available for this feature:
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