TCONS_00018761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018761
Unique NameTCONS_00018761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018761 ID=TCONS_00018761|Name=TCONS_00018761|organism=Clytia hemisphaerica|type=transcript|length=382bp
GATAGATTTGTACCCTTTATGAAAATTCATTCCAGGCGCGGTGATTGGAT
GAAATAACTTCTTTTTCACAGACAATAGGGTATCTTGGAAAAAGATGTAA
ACATAGGAAAACCTGGCAATCTTGAGAGTAATGCAAATATAAagatcaaa
aatataaaatgtaaaaGACATCCTTCTTAGGATATAAGAATCTTGGCTCG
ACCAGCGAGCCAAAGCAGTATATCtatgtgaaaattaaaaatctatATAA
GATTGCTAGTGGATGAGGCGAGAcaataaatttaatttattgttctacgg
gaAGACCTTTAGAAAAGAATGGGCCTGTCGGTTgttatgataaaaataaa
ttccTAAAATCTAGGGTCAAAAAAGATTTGTG
Run BLAST on NCBI

transcript from alignment at sc0000305:294609..294990

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018761 ID=TCONS_00018761|Name=TCONS_00018761|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0000305:294609..294990 (Clytia hemisphaerica)
CACAAATCTTTTTTGACCCTAGATTTTAggaatttatttttatcataacA
ACCGACAGGCCCATTCTTTTCTAAAGGTCTtcccgtagaacaataaatta
aatttattgTCTCGCCTCATCCACTAGCAATCTTATatagatttttaatt
ttcacataGATATACTGCTTTGGCTCGCTGGTCGAGCCAAGATTCTTATA
TCCTAAGAAGGATGTCttttacattttatatttttgatctTTATATTTGC
ATTACTCTCAAGATTGCCAGGTTTTCCTATGTTTACATCTTTTTCCAAGA
TACCCTATTGTCTGTGAAAAAGAAGTTATTTCATCCAATCACCGCGCCTG
GAATGAATTTTCATAAAGGGTACAAATCTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010505XLOC_010505Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018761-exon-sc0000305-1491911889:294609..294990TCONS_00018761-exon-sc0000305-1491911889:294609..294990Clytia hemisphaericaexon
TCONS_00018761-exon-sc0000305-1510915933:294609..294990TCONS_00018761-exon-sc0000305-1510915933:294609..294990Clytia hemisphaericaexon
TCONS_00018761-exon-sc0000305-1575043694:294609..294990TCONS_00018761-exon-sc0000305-1575043694:294609..294990Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:294609..294990 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.05074	1.39985	1.62536	0.454333	0.276553	0.437072	0.527309	0.49366	0	0.42811	0.415534	0	1.36388	2.26625	1.16448	1.24966	1.23158	0.788959	1.74398	0	0.594831	1.16055	2.1162	2.77902	0	0.98252	1.68718	0	2.04854	2.31904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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