TCONS_00018631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018631
Unique NameTCONS_00018631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018631 ID=TCONS_00018631|Name=TCONS_00018631|organism=Clytia hemisphaerica|type=transcript|length=2875bp
TAAAATTTAACTTTCGATTGTGATCGAAGTGATCAATAATGAGAGATACC
GATTATGGCGACTGCATTAGTTGATCATCACCATAGAACTTTGATATCAA
AGATAAATCATAGAATAACCAGCAACGAGAAATTCTTTTCTTTGGAATTT
TATCCTCCTCGTACACCAAGTGGCACATTCAACTTGTTTGAAAAATGTGA
TCGATTCTCAAAGGGACAACCGttattttgtgacgtcacatgTGATAAAG
TCAAAgatgaaagaaaaagtaatcattcagtcaaagtAGCTTCAACAGCT
CAAAACATAACAATGTGTGATACAATGGTTCAACTAAATGCTCACGATTT
GGTAGAAGAAAAAGCTATTGAAGTGTTATCAAATGCCAAAGATCATGGTC
TGTCTACAGTGATGGTTTTAATGGAAGGAATTGAAGAGAGTGAAAGCAGT
GGTGACTTTGAATGCTCAGCTGAACTAGTTCGATTTATAAGAGAAGTGTA
TGAAGATTACTTTACTATATGTGTAGCAGGTTACCCAAATTGTATCGAGT
ATGAATCGTTTTATGAACAAAGTATGGAACACTTGATTGAAGAGGTGGAA
GCAGGTGCAGACTTTATCATCACCCAAATGGTTTTCGATGCGACTGATTT
CTTTAAATTTGTCAATAAATGCAGGGAAAATTCAATATCTGTACCTATTC
TTCCTGGTATATTTCCAATCCAGaGTTATGGTTGTATCACCCAGGTGGCT
AGACATTCTCGTATTAAAATCCCAAACAAAATCATGAATGTTTTGAAACC
GATCAAAAACAATGATGCCAGTGTGCTTAAATATGGAATATTCTTAACGG
TTGAATTGTGCAAGTATTTATTACAAAATGCTTTATGTGCTGGCTTACAC
TTTTATACATTGAATCGTGAAACTGCAACAACGGAGGTCTTGAAACGAGT
TGGTTTATGGCGGGAAGCTAAATTGGAACACCGGGTTTTACCATGGAAAT
CCGATTCGGATTCGAATGAGCGTGAAGGAGAAGAAGTTCGCCCAATTTTC
TGGTCATGTCGACCGAAGAGTTACGAACATAGAACTTCTTGTTGGGAAAA
CTTTCCGAATGGTCGTTGGGGAGATTCATCCACAGCAGAATTTGGAAGTT
TTAAAGACTATCATTTATTTTTTGCTAAGAATAATAATTTTCAAGAGCAA
AAGAAAATGTGGGGTGATCAGTTGACTTGTTTGCAAGATATATTTGATGT
GTTTGTGGCATTTATCAGTGGAAAGCCGAATAAAAATGGTGTAAAGGTCA
AGCAGATTCCATGGAGTGAGGAAGACTTAGCTCCAGAAACATCCTTATTA
ACTGATGAACTTTTGCACTTAAATCAAAATGGTATCTTAACTATTAACAG
TCAACCCAATGTAAATTGTGTCCCTTCAACTGATAAAACATTTGGCTGGG
GAAACCCTGGAGGATACGTTTTCCAGAAAGGCTACTTGGAGTTTTTCTGC
TCGGAAGAAGATGCAAAAAATCTGTTAACTGTTTTGAAGAATCATGACAC
CATTAATTATCATCTTGTCAAAGCATCGGGAGATGAGAATTATACGAACT
GTGACGACGAGGAAGCGAACGTTGTGACATGGGGTGTTTTCACCGGAAGT
CTTGTCATCCAACCGACGGTTGTGGACCCGGTGGCGTTTCATTACTGGAA
GGAAGAAGCTTTCGAGCTTTGGATCGAGCAATGGGGTCGCTTATATGGGC
CGTCTTCTAAATCACGTCAAATGATACAGCAAATACACGATGGTTTCTAC
CTCGCCAATCTGGTTGACAATGATTATCCGAGAGGGAATCGACTGTTTGA
CGTTGTACGTACTGTTATTGGAATGAGAAAATGattcagatttcgaaaaa
tggcttaaaatcaTACGAAATAAAATGaggtggtgtttaaaatttgccAA
ATACATTTATCAACCATTTTGTGGAGAGTTACGTGAAACAGGATTGTGCT
CGAGGTTACCAGATTCTAATGATGTCATTATTAGCTTACATCTCACAGGA
CTTGCGACTTCTTGTTAACTCTTGTAATCTCCTTTCTGGTGCCAAGATTG
ATCGTCGTAATGTCAATTGTTGTGTTGCTTGTGTAGAGTTGTTTGTATTA
GCAAAAAAGTGATCAGAAGTTCTAACATTTTCTTTTCACAAGAAAACTTT
GATAGGTTCATGGTTTTATCACTGATGAAATACATTGTTATAGGCATTTA
GTTGAGCTATTAGGATTATAAgcttaaattcaaaaattttcaaccagGTG
CTTATCTGTTCTGGGCGCCATATTGGACCTTTGCCCATCAAAGTAAGAAA
GTTAGTCTTAAAACACATAGAAAGATGTTTAAAACAATACTTTTAGTAAA
TAGATAGACGAAATTGTCACCTACTGTATTTCCTTTGAGAACAACACCAA
TTTTTTGTCACTGATAGTAAATTCACGGGGTATTTTTAACCGAAATCTGA
TCATGAAAATTTAATCAAGATTTTTAGTTTCgcaaaaaggcaaaaattct
GGGGTGTCCGATTGAAGTAATCATTCAGCCGCTGATAGACTTCTGTCTGT
TTATGGGTAGGGTGTTTATTGTGTAGGATGTGTCTATtttggtgaaagag
tttttaaaattcaaagagctttttattagaattatcatatttttcttgaa
tttattCGTAATTTTTCTAAAGTGTAAATATGTAGATAGGAATGTGATTT
TTTTGGAGATGActtttattatcaaaatttcttgatCTTTTTTCACCTGA
ATAAATAAATGTACATAGTAATCATATAATTAGAGCACAAATACATTATT
AAAGCATTATTTAAAATGCATAGAA
Run BLAST on NCBI

transcript from alignment at sc0000303:159393..167013-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018631 ID=TCONS_00018631|Name=TCONS_00018631|organism=Clytia hemisphaerica|type=transcript|length=7621bp|location=Sequence derived from alignment at sc0000303:159393..167013- (Clytia hemisphaerica)
TAAAATTTAACTTTCGATTGTGATCGAAGTGATCAATAATGAGAGATACC
GTAAGTTAGTCTAATGTTGACATCCCTCTTCTAATTTCAACACCCTACTT
TAGAGATAGGAATAATAGGAAGGTCGGAATCACATGCGCCAAACAAGGAG
GACAAGATTCCTTTGTGAAACAAGGATTACAAAACCCAATGCAATTCTAT
TGTTAGTAATTGATCGTCAACGTTTTAAGGTTTTTTGGTGAGTTGGTCTC
GACAAAAGACAATTTTGCGGGCTGAGAGGCGATGATTACGGATGTTGAGT
TGATGAACAACAGCAGCAAGCGTTGAATCGGAGAATCGAGAGCCAGAGCT
ATCGATATGTAAAATCTCTTTCTCAAACTCTTGGATTGCAACAGGATTTT
TATTGGGATTTTTCACACAACTAAGGTCTAAAGTTATCCTGTGTTTGTTT
AAAATCTTGTCGTTTTTAAGACTTTGAAATCCTGGAGCGTTGTCAATATG
AATGGTTGATTGGTTTTTCCGAAGTAAAGTGGTGTCATAGTGTGAAAAGG
GGTCTGATCCCTCCCCCCCCCTTGTTAAATGATCTTCCCCTTCTTGGCAC
CCCTCCCAACCTTTAAAAATGTCTATCCCCCAAATTGTTTTGGGCTAAAT
TTTCAAAAATGTATAGTGTATAGTGCGATCCGATAATCCCCTTCTCGCTG
CTATCCCCTTCTAAAAATCAATCCCCTTGTTTCCTCTCTCTATTTGTTTA
TGGTAAAAAGGGAAGGGAAACAGTAAGAGAGAATTAAGTCTGACAATTAG
GTATATGTAAGGCCCCCTTTCTTAAACGATCCCCCTTCCTTGCAATCCCC
CCTTTTTAATAAAAATTTCTGATTCCCCCCTTCTTTACTTTTTTGGAAGG
TGTCATCCCCCCTTAAGGAAGGGGGGGTCCGAACTATGAGTGTGCATGGT
GATTGATGATCTGAGGACGTCTGCTGTTTCATCTGGGATGAAAGAAGCGG
AGGTGAATGATAATAAAAAAATACATCTCGGACAATGAAGATCTTTTGGT
GGTTACAGCGGATAACGTCAGCGGCGAATTGCTCACCTGGAGCCGTCGGA
ATGGACCAGATGTTTGTGTGAGAATTTCCTTAGGGAGACGGGCTAAGAAA
TTGCAATGTTGGCAACTGCTGACAATGGATTGCATTGTTTCGTCACTGTT
GATGCCATAAAAGCATCCACCAAACAGTTGTGATATTTGGTGTTTAGATG
TGTGGTTGAAATGGAGATGCAGTGCAGTGATTAGTCCTGACAGGATGTCT
TAAGGGACAATGATGGGGTCCTTTTGCAAAACATATGGATTGTGGATGCA
ACAGACAATTAGANCTGACAATTAGGTATATGTAAGGCCCCCTTTCTTAA
ACGATCCCCCTTCCTTGCAATCCCCCAGCATTGTTTAAGGTAGCTATTTG
AAGATAACAGCAGATATCTCTGATGTGTTTGGCTTTTCGAGATGCTCATA
AGTTCGTCGTAAATCATTACAATATTGTTGGGTCAATTTCTAAGCTACTA
TTGAGGAATTTGTGTTTGACCAGACAAGATATCAGAAGTTTCGACAGATG
CAACAACCAATAAAATGGTGTCTTGAATAAATATACAGATTTGGCAAGTA
GCATCGACACATATTTGTGGGTGGCGTGAACTGAAATCGCTGAAAGCATT
GGATGTTCCCTTAATGTAGCATAGAGAGACATAATGTTCACTCAGTGTGG
ACAAAAGTGTTGACACACGTGAGGAAGCTGAGAATTGTCCATTGTGTAGT
TTTCAAAAATGCTTCTACACAAGGCTGATTGTCCGTTAAACATTGCAGGG
GATGGTGTGATTCAGGAATGAAAGGCGAGAAGTGTTTCACTCCAGCAGTT
ATAGGGAGCACTTCAAGTTCGCAAGGCTGTCAATCTTGTTGATGTTGTTT
TAATTTGAGAAATGTAAATTTTGGTTGCAAAAGTATAATATTTTTAAAAC
CTTCATAAAGATTACACAAAATGCTTTGACATATAAAAGAAGCCCCTTCG
GAACCAAAAAATCATTTTGAATTCCTCTTTTATTCAAATTTCAGGATTAT
GGCGACTGCATTAGTTGATCATCACCATAGAACTTTGATATCAAAGATAA
ATCATAGAATAACCAGCAACGAGAAATTCTTTTCTTTGGAATTTTATCCT
CCTCGTACACCAAGTGGCACATTCAACTTGTTTGAAAAATGTGATCGATT
CTCAAAGGGACAACCGTTATTTTGTGACGTCACATGTGATAAAGTCAAAG
ATGAAAGAAAAAGTAATCATTCAGTCAAAGTAGCTTCAACAGCTCAAAAC
ATAACAATGTGTGATACAATGGTTCAACTAAATGCTCACGATTTGGTAGA
AGAAAAAGCTATTGAAGTGTTATCAAATGCCAAAGATCATGGTCTGTCTA
CAGTGATGGTTTTAATGGAAGGTATTACTAGTTATTTTTTAAATATTTTT
TCTAAATTTTTGAGATTTTGAAATGTAAAAATAGCGTTGACAAATAAATT
GGCTCTTAGGCGGCAGCATCTAATGAGTAGTCTAGGCTATTAGGTGGTCT
TCGTTCCTTTTATTTGATAGATATCGTCATTGTATCTTCTGAAAATAGAC
GATATCGGCTCAACATGAAAACTCAGATTTGATCCACGAGAATTTCCCAC
AATGCTTTGCGCGGAAAATATTTCACTGCAAACTTTTTTCCGCGCAAAGT
ATTGTGGGGAATTCTCGGGGATCAAATCTGAGTGTTCATGTTAAGCCGAT
ATCGTCTATTGATCAAATAGTACTGATTAGTAAAATAAATTGACATTAAT
TTACTTATTCCCAAAGATCTAACAAATCCATTTCTTTTCTGCAGGAATTG
AAGAGAGTGAAAGCAGTGGTGACTTTGAATGCTCAGCTGAACTAGTTCGA
TTTATAAGAGAAGTGTATGAAGATTACTTTACTATATGTGTAGCAGGTAT
GTTTGAGATGTTCAATTAATAATGATATGTAACTTTTTCTAGGCTGGTGG
CATATTGTACTCCCTGCAGTTTTGTAGAGGCCGTCTTCAATTCAGATTAA
GCTTTTTTCTTAAGATAAAAAAATAGAAAATCTTAGCCTCCAAACTTGTA
TTCACTTGATGAAGCTTTAAAGCTTTAAGCTAAAATACGTCACTTGGAGA
TTGCATCTGATTTCTTAATTTAGTAAGACGAAGAAGATTCACTTTGTTTA
ACTTTAGAGCTTTTGAAAGCGTCATATTTATATATGTTATTACTTTTCAA
GGTTACCCAAATTGTATCGAGTATGAATCGTTTTATGAACAAAGTATGGA
ACACTTGATTGAAGAGGTGGAAGCAGGTGCAGACTTTATCATCACCCAAA
TGGTTTTCGATGCGACTGATTTCTTTAAATTTGTCAATAAATGCAGGGAA
AATTCAATATCTGTACCTATTCTTCCTGGTATATTTCCAATCCAGGTAAA
ACTTCTTACTTTTATTTTCTTGAAATGTTTAACACGTTTTTACACCATAT
TATCTTTAACTAAAAATTGCATTGGAGCTAGACCTTCTGCATTCCATTTT
GCTGGTCGTAAGTTCTTGAAAAGGCTAGGTTTGCTTTCTTTTTTACCCGA
CTTAATTAAAACATTTAACACTATTTTGTCTTTTTAGAGTTATGGTTGTA
TCACCCAGGTGGCTAGACATTCTCGTATTAAAATCCCAAACAAAATCATG
AATGTTTTGAAACCGATCAAAAACAATGATGCCAGTGTGCTTAAATATGG
AATATTCTTAACGGTTGAATTGTGCAAGTATTTATTACAAAATGCTTTAT
GTGCTGGCTTACACTTTTATACATTGAATCGTGAAACTGCAACAACGGAG
GTCTTGAAACGAGTTGGTTTATGGCGGGAAGCTAAATTGGAACACCGGGT
TTTACCATGGAAATCCGATTCGGATTCGAATGAGCGTGAAGGAGAAGAAG
TTCGCCCAATTTTCTGGTCATGTCGACCGAAGAGTTACGAACATAGAACT
TCTTGTTGGGAAAACTTTCCGAATGGTCGTTGGGGAGATTCATCCACAGC
AGAATTTGGAAGTTTTAAAGACTATCATTTATTTTTTGCTAAGAATAATA
ATTTTCAAGAGCAAAAGAAAATGTGGGGTGATCAGTTGACTTGTTTGCAA
GATATATTTGATGTGTTTGTGGCATTTATCAGTGGAAAGCCGAATAAAAA
TGGTGTAAAGGTAATGAAAATGAATTTTCCAAGATTGAACTCTTTTCTTT
TTGCAGTTACATAACAACCAAACAAATTGTTTTGATAATAAGTTTATTTA
CCTAAGCATTAACATACATGTCAAGGTTATGCAAACTTTATCACTCAAAT
AATTCATTAAAAAAATTCAAAGCCTTTTAACAAATACAACAAAAGTTTGT
AGGAATTCATAATTTAATTTAACATCGTTCTTCAAAAATTTTAATGCCGT
TTAGCAAGTAAGGGGTTGTTGGGTTGACATTTCTGTGTCACTCAACTTCA
CATGTTGTTCACACGTTATAGGCGAAATAAAATTAAATCACTATCGTAAA
GGTTTTATTTTTACATATGTGTTCCCGTTTCATATCAGACACATATTTCA
TATCAGGACAGTGTCTGCCTATTGTTATATTATGCTGATATAAGCAAAAA
CTGTTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATCTGTGTCAA
TTCAATATAAAAAAAACTTTAAATTAAGATTGATGAGTAAGGAAACAATA
TCACGCTTATGTAAAGACAAAGCCTTTTATTTAGATTTGTATGATTGTGA
GATTGTATCTTCATTTATAGGTCAAGCAGATTCCATGGAGTGAGGAAGAC
TTAGCTCCAGAAACATCCTTATTAACTGATGAACTTTTGCACTTAAATCA
AAATGGTATCTTAACTATTAACAGTCAACCCAATGTAAATTGTGTCCCTT
CAACTGATAAAACATTTGGCTGGGGAAACCCTGGAGGATACGTTTTCCAG
AAAGGCTACTTGGAGTTTTTCTGCTCGGAAGAAGATGCAAAAAATCTGTT
AACTGTTTTGAAGAATCATGACACCATTAATTATCATCTTGTCAAAGCAT
CGGTTAGTAATAAAATAGCTCACATTCTCTACTCTATAGATTATGAGGAA
GCATCTTCTGATAAACATTTCATGACAATGTCATTTTTTCAAAATCGCGC
CCCTTCGATCGATTTCAATGTGGCGTCTTCATTGCGAGCAAAGCAGGCGA
GAAAATTGTGCAATTTATTTAAAATTATTTTTGTGAAACTGGTCTTGGGG
CACAGCTTAATAAGGAGCGTAAAGTACGTTTTTTAAAGAATAAGGTGTTT
TAAAAAAACTTCTTTTGGCGCCCCTTGCTCTTCGGCGCCTCTTCAAAAAA
GATCCGCTGAGGGGGGGAGGGCGTGACTCTCCTGGCTGAACTCCACTGGT
TTCATCAACTTGAAGTCTTTTTGATAAAAGGTTATTGGCTATATCATGTG
AAATTTTTGACGTTTAAAGCTATTTTCTCGGAGTTTTGACACTATATCTT
AAAAGCTAGCAACTTGGAAATTGAGATCTCTCCTATTTTGTTTGAACAAT
GAAATTTAAGCAAAAACAAGAAGAGGAATATTATGAGCTCCATACAGCGC
TGAGCTGGTTCCCAATAGTCCTAAAATATTACTCAATAATAAGATTAATG
TTGGCAATTCTTTGATCATATCAGTTAGATTAAAACTTCTCTCTCCCAAA
ATATGGATACCTCTTTAATCTCACGGCGACCAGATTGATCAGAAATTTTG
ATTTGTTTTAACCTATTACAGGGAGATGAGAATTATACGAACTGTGACGA
CGAGGAAGCGAACGTTGTGACATGGGGTGTTTTCACCGGAAGTCTTGTCA
TCCAACCGACGGTTGTGGACCCGGTGGCGTTTCATTACTGGAAGGTGAGA
TTGGTTAAGCTCTAGTTTAGACAACTTTCAGCCCCGCTTATTCTAGTTGT
TAGATTAGGCACAAAGTCTATAGAAAAGTTGTTAAGCAAAATCTTTGCTT
GGAGTGTATAACAATGTAAATCATATTGACGTGCCTATAAGATGTAAGAA
GTCAGCTTTCTGATGAATTTAACCACATTTAGAATAGACAGGACAAAAGT
GGGCTGAGAAGTAAATACAGGTTGTTTTGGCACCCCATTTAGGTTTGGCT
GTTTCTGTTTGGTGCCTTCCTGAATTTCACCTTCTCAAGCTAGGACACAA
GAAAACTGGTACTCTCAAGGCTATTCCTAAATTTGTTTTTCTTTTTATTG
GCCAAAATAGATGGTATCAATCATCATTCTAAAAACCATGATTAAGAAAA
TGTAGAAAAGCATAATATGCAAGTAACCCATCTTTTCGTTATTACAGGAA
GAAGCTTTCGAGCTTTGGATCGAGCAATGGGGTCGCTTATATGGGCCGTC
TTCTAAATCACGTCAAATGATACAGCAAATACACGATGGTTTCTACCTCG
CCAATCTGGTTGACAATGATTATCCGAGAGGGAATCGACTGTTTGACGTT
GTACGTACTGTTATTGGAATGAGAAAATGATTCAGATTTCGAAAAATGGC
TTAAAATCATACGAAATAAAATGAGGTGGTGTTTAAAATTTGCCAAATAC
ATTTATCAACCATTTTGTGGAGAGTTACGTGAAACAGGATTGTGCTCGAG
GTTACCAGATTCTAATGATGTCATTATTAGCTTACATCTCACAGGACTTG
CGACTTCTTGTTAACTCTTGTAATCTCCTTTCTGGTGCCAAGATTGATCG
TCGTAATGTCAATTGTTGTGTTGCTTGTGTAGAGTTGTTTGTATTAGCAA
AAAAGTGATCAGAAGTTCTAACATTTTCTTTTCACAAGAAAACTTTGATA
GGTTCATGGTTTTATCACTGATGAAATACATTGTTATAGGCATTTAGTTG
AGCTATTAGGATTATAAGCTTAAATTCAAAAATTTTCAACCAGGTGCTTA
TCTGTTCTGGGCGCCATATTGGACCTTTGCCCATCAAAGTAAGAAAGTTA
GTCTTAAAACACATAGAAAGATGTTTAAAACAATACTTTTAGTAAATAGA
TAGACGAAATTGTCACCTACTGTATTTCCTTTGAGAACAACACCAATTTT
TTGTCACTGATAGTAAATTCACGGGGTATTTTTAACCGAAATCTGATCAT
GAAAATTTAATCAAGATTTTTAGTTTCGCAAAAAGGCAAAAATTCTGGGG
TGTCCGATTGAAGTAATCATTCAGCCGCTGATAGACTTCTGTCTGTTTAT
GGGTAGGGTGTTTATTGTGTAGGATGTGTCTATTTTGGTGAAAGAGTTTT
TAAAATTCAAAGAGCTTTTTATTAGAATTATCATATTTTTCTTGAATTTA
TTCGTAATTTTTCTAAAGTGTAAATATGTAGATAGGAATGTGATTTTTTT
GGAGATGACTTTTATTATCAAAATTTCTTGATCTTTTTTCACCTGAATAA
ATAAATGTACATAGTAATCATATAATTAGAGCACAAATACATTATTAAAG
CATTATTTAAAATGCATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010414XLOC_010414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018631-exon-sc0000303-1575043694:166964..167013TCONS_00018631-exon-sc0000303-1575043694:166964..167013Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1575043694:164543..164919TCONS_00018631-exon-sc0000303-1575043694:164543..164919Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1575043694:164018..164119TCONS_00018631-exon-sc0000303-1575043694:164018..164119Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1575043694:163519..163712TCONS_00018631-exon-sc0000303-1575043694:163519..163712Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1575043694:162754..163326TCONS_00018631-exon-sc0000303-1575043694:162754..163326Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1575043694:161862..162143TCONS_00018631-exon-sc0000303-1575043694:161862..162143Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1575043694:161020..161142TCONS_00018631-exon-sc0000303-1575043694:161020..161142Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1575043694:159393..160566TCONS_00018631-exon-sc0000303-1575043694:159393..160566Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1510915933:166964..167013TCONS_00018631-exon-sc0000303-1510915933:166964..167013Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1510915933:164543..164919TCONS_00018631-exon-sc0000303-1510915933:164543..164919Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1510915933:164018..164119TCONS_00018631-exon-sc0000303-1510915933:164018..164119Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1510915933:163519..163712TCONS_00018631-exon-sc0000303-1510915933:163519..163712Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1510915933:162754..163326TCONS_00018631-exon-sc0000303-1510915933:162754..163326Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1510915933:161862..162143TCONS_00018631-exon-sc0000303-1510915933:161862..162143Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1510915933:161020..161142TCONS_00018631-exon-sc0000303-1510915933:161020..161142Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1510915933:159393..160566TCONS_00018631-exon-sc0000303-1510915933:159393..160566Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1491911889:166964..167013TCONS_00018631-exon-sc0000303-1491911889:166964..167013Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1491911889:164543..164919TCONS_00018631-exon-sc0000303-1491911889:164543..164919Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1491911889:164018..164119TCONS_00018631-exon-sc0000303-1491911889:164018..164119Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1491911889:163519..163712TCONS_00018631-exon-sc0000303-1491911889:163519..163712Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1491911889:162754..163326TCONS_00018631-exon-sc0000303-1491911889:162754..163326Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1491911889:161862..162143TCONS_00018631-exon-sc0000303-1491911889:161862..162143Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1491911889:161020..161142TCONS_00018631-exon-sc0000303-1491911889:161020..161142Clytia hemisphaericaexon
TCONS_00018631-exon-sc0000303-1491911889:159393..160566TCONS_00018631-exon-sc0000303-1491911889:159393..160566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:159393..167013 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.427614	6.40709e-06	0	0.0121779	1.75416	0.0149401	1.9014	2.72113	4.39041	3.0704	3.97482	0.983994	1.94895	3.11755	2.66481	1.99574	1.41997	1.71069	3.00435	1.33588	1.0976	1.76977	0.904543	1.18658	4.92664	6.17056	0.474427	0.0807565	0.120251	0
Blast
[Close]
BLAST of TCONS_00018631 vs. Swiss-Prot (Human)
Match: MTHR (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 603.979 bits (1556), Expect = 0.000e+0
Identity = 304/611 (49.75%), Postives = 403/611 (65.96%), Query Frame = 1 
Query:   64 ALVDHHHRTLISKINHRITSNEKFFSLEFYPPRTPSGTFNLFEKCDRFSKGQPLFCDVTCDKVKD--ERKSNHSVKVASTAQNITMCDTMVQLNAHDLVEEKAIEVLSNAKDHGLSTVMVLME---GIEESESSGDFECSAELVRFIREVYEDYFTICVAGYPNCIEYESFYEQSMEHLIEEVEAGADFIITQMVFDATDFFKFVNKCRENSISVPILPGIFPIQSYGCITQVARHSRIKIPNKIMNVLKPIKNNDASVLKYGIFLTVELCKYLLQNALCAGLHFYTLNRETATTEVLKRVGLWREAKLEHRVLPWKSDSDSNEREGEEVRPIFWSCRPKSYEHRTSCWENFPNGRWGDSSTAEFGSFKDYHLFFAKNNNFQEQ-KKMWGDQLTCLQDIFDVFVAFISGKPNKNGVKVKQIPWSEEDLAPETSLLTDELLHLNQNGILTINSQPNVNCVPSTDKTFGWGNPGGYVFQKGYLEFFCSEEDAKNLLTVLKNHD-TINYHLVKASGDENYTNCDDEEANVVTWGVFTGSLVIQPTVVDPVAFHYWKEEAFELWIEQWGRLYGPSSKSRQMIQQIHDGFYLANLVDNDYPRGNRLFDVVRTVIGM 1875
             L    H  L  K+  R+ S +K+FSLEF+PPRT  G  NL  + DR + G PL+ DVT     D    K   S+ +ASTA N    +T++ +       E+    L  AK  GL  +M L     G +  E  G F  + +LV+ IR  + DYF ICVAGYP        +E  ++HL E+V AGADFIITQ+ F+A  FF+FV  C +  I+ PI+PGIFPIQ Y  + Q+ + S++++P +I +V++PIK+NDA++  YGI L V LC+ LL + L  GLHFYTLNRE ATTEVLKR+G+W E     R LPW   +    RE E+VRPIFW+ RPKSY +RT  W+ FPNGRWG+SS+  FG  KDY+LF+ K+ + +E+  KMWG++LT  + +F+VFV ++SG+PN+NG KV  +PW++E LA ETSLL +ELL +N+ GILTINSQPN+N  PS+D   GWG  GGYVFQK YLEFF S E A+ LL VLK ++  +NYHLV   G EN TN  + + N VTWG+F G  +IQPTVVDPV+F +WK+EAF LWIE+WG+LY   S SR +IQ IHD ++L NLVDND+P  N L+ VV   + +
Sbjct:   36 GLDPERHERLREKMRRRLESGDKWFSLEFFPPRTAEGAVNLISRFDRMAAGGPLYIDVTWHPAGDPGSDKETSSMMIASTAVNYCGLETILHMTCCRQRLEEITGHLHKAKQLGLKNIMALRGDPIGDQWEEEEGGFNYAVDLVKHIRSEFGDYFDICVAGYPKGHPEAGSFEADLKHLKEKVSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNREMATTEVLKRLGMWTEDP--RRPLPWALSAHPKRRE-EDVRPIFWASRPKSYIYRTQEWDEFPNGRWGNSSSPAFGELKDYYLFYLKSKSPKEELLKMWGEELTSEESVFEVFVLYLSGEPNRNGHKVTCLPWNDEPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAYLEFFTSRETAEALLQVLKKYELRVNYHLVNVKG-ENITNAPELQPNAVTWGIFPGREIIQPTVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDFPLDNCLWQVVEDTLEL 642
The following BLAST results are available for this feature:
BLAST of TCONS_00018631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTHR0.000e+049.75Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
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