TCONS_00018627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018627
Unique NameTCONS_00018627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018627 ID=TCONS_00018627|Name=TCONS_00018627|organism=Clytia hemisphaerica|type=transcript|length=1619bp
AAACATATTAAATAAATTTAGGCTATTATTTCACATGGAGTTTCATCATT
TTTCCATGTGCTTTCTTGGACTTGGACCTCTACTTTCTGGTAAATTTTTT
ACTTGCTtataaatcctaccaaagtaaATGCTTGCAGTAGCCAGTATCAA
GTAAACCAGAAACTTCACAGATCAAGCAAGAATCAAACTTACTAGGAAAG
ACAAGATGACTTCCAAAGAGGTGCATACATCAATTTTGACTTCGCTGTTG
GCTGGGAGTTGCGGTGGGATATCAACAGACATTGTTTTATTTCCACTTGA
CTCGATCAAAACAAGAGCACAAACACAAGCTGGTTTTTGGAAGAGTGGTG
GATTCAAGGGCCTTTTTCGTGGTGTTGGCTCAGTTGCTCTGGGCTCTGCT
CCGTCAGGCGCATCCTTTTTCTTTGCATATGAGGGCGTAAAGAATTTAAC
AAAATCGAACATGTCACCTCTGGCTTCTCATTTACTTGCTGCATCTTGTG
GTGAAGTTTTCTCATGCATGTTTCGTATACCATTTGAAGTTGTCAAGCAA
ACTGCTCAAGCAAATAAAAGCTTGAATAGTCTCGATGCATTGAAATTCAT
TGTGAAAAGAGACGGATTAGCTGGCTTAACTCGAGGTTTCTTCAGCATGG
TATCGCGAGAGattCCATTTACTGTCATTCAATTTCCTCTTTGGGAGCAC
TTGAAAACTTTAGCAGCAAAGGATGACAAACCATGCACCCCGTTGGCATC
TGCTGTGGCAGGTTCATTTGCTGGTGGTTTTGCTGCGGCGCTCACTACAC
CCATGGATGTGGCCAAAACAAGAATCATACTGGTTCAGAATGAAGGAAGT
CATGGTGGAAACCCTTATAAAGTGATGTACAGTATTGGCAAAACTGAAGG
GATAGCAAGGTTGTTTTCTGGCATTGTACCTCGTGTTGTCTGGATATCTA
TTGGTGGATTCATATTCCTGGGAACATATGAAAAGTCAAAGCAGATTCTC
CAGGATCTTGGTATTTGAAATGTGTGGGTTTGCTGTGCAGTAGTGTGTGG
TGTAAATGGGTTCGAAATGGATTGTAATCTCTGTTTCAAATCAGCCATCA
CTCATCCTTCGATATTTTTGTGACGTGTGATAGATGTGTGAAGACAGAAC
GACATGATTTAATAACATGTAAATTTCAATATCGTGGATACTATTGGCTT
CTATTCTAAAAGTTGCATACAGTATCCTGTCTCCAGATTGTTTGCCAATG
ACTGGAATAATGAATTTTTAGTGCCTTTAAATCTACAGAGACTGACGAAG
CTAATCCAAGATGGCactgtcaaatatttttttggcttaaaaatatatat
aaattattttatttaaaagaaatgcaTTTTCTACGTTCAAATATTAAATA
GAATGTTTAAGAGTTTTGctatatattttataaattttacaacaaatttg
ttatacatatttttcagatttttatacATTATAAGATAGAACAGTGAACA
GAGTTAATTTTATTTCACTTAATTTTAAACGTCGGGGGAACTTCATCAAA
AGTCAAGAGTGgatttacagtgcatttctgatattttgaaaaacaaccct
taaccgccgcaaaTACCCG
Run BLAST on NCBI

transcript from alignment at sc0000303:142189..157490-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018627 ID=TCONS_00018627|Name=TCONS_00018627|organism=Clytia hemisphaerica|type=transcript|length=15302bp|location=Sequence derived from alignment at sc0000303:142189..157490- (Clytia hemisphaerica)
AAACATATTAAATAAATTTAGGCTATTATTTCACATGGAGTTTCATCATT
TTTCCATGTGCTTTCTTGGACTTGGACCTCTACTTTCTGGTAAATTTTTT
ACTTGCTTATAAATCCTACCAAAGTAAATGCTTGCAGTAGCCAGTATCAA
GTAAACCAGAAACTTCACAGATCAAGCAAGAATCAAACTTACTAGGAAAG
ACAAGGTAAAGTTTAATATAAAAACACAATAAAAGCTAATTTCTCTTTTG
GAATTTTTCAAAAAATTGTAATTGTCTTGATATCTTACAGTCTGATAGTA
TGAATTAGTTTAACTTAAATTGGAGTAACAGCATGGGATGTCAATCAAAC
TGTTCGATTACTGAACTGATTGAACTTAATTCGATCGTACTTGGATTACC
GAACACCAAATCGAACAGTAATCAAATCAAGAAATTTCGGTAAAAAGTTT
GATGACTCTTTTTTTGATTGATCTTTTGTATTTGATACCAATTTGATTAT
AGTTCGATAGGTTTGATATCTTAATTCCATAGGTTCAATCGTAGTTTAAG
TAAGACATGCATTCAAAGGACCCTGCCGACGCACCGGACTTAACGAACAC
CGGACACGCGAAAATCCGGTGTAAAAGAGAATTTTTTTTACCACCGGACA
ATTTCTACACCGGACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACCGGACTGAC
ACCGGACTTATTACGTCCGGTGTAGCGAAAGGATACTTTTTTCCACCGGA
CAAATACACCGGACAGTCCGGTGCGTTGGCAGGGTCCTGCATTCAATTAA
GGGTCTTGCTTCTTTCTAGGCAATTTTCGCAATTAGTTGTTTTGGAGAAC
GTGACAGCTTTTTGAATAACTTATTACTTCACAACAGTTACTTATTTTTG
ATACTTTTTGAAGGCTTCTTTGTTCGTCTCAACAATCATCCAATTTGAGA
AATCCGATGATGGACCATGACTTTGATGCTATTTGAATCAGCCTCCTAAG
AGGAAAGTAATTCGGCAGCAGTGGCTCGTCCCGTAGTGAATTGAGAAAAT
AGTCCAATTGATATTTAAAATTAGTTTTGGAGCAGTTTTTGAGGTTACGG
ATGGATTGTGGGAGGGCATTAAAGGGACCCCTCGCTTGTTTGTGATCTTT
ATGAAATCAAATTATATTGGTCCGAAAACCCCTAACAGCATATTCAAAGA
ACATAAAACTTACTGCTAGTTCCTGTAGAGATATCGAAAAATTCCTCTGA
AAACAGTATGGCGTCTCCGTCTGACTGAAACCAACACAACCAGGGCTCCT
TGGGAGTTCTGAAGCCGATACCGATTCTCCATAAACCCGCAACTCGACTC
CAAGCAAAGGGTTTTTCTTAGGAGAGGAGCGTGGATTCTAGACTGTTCGA
ACCAGAGCTGGCCTCTACACTCGTACTCTAATTTTCTGGTGCATTTGTGT
CGACAACTTGGTGCGACAAGAGCGCGAGAAAGTTCGAAGACCTTCAGAAG
CCATTTGAAATTTCTGAAAGTTGAGTGAACATCAAAATTTATAATTTGTT
ATTATGGAGCGAAGAAAGAGTTTTGCGTGCTAATATTTTGGGAAGTTGCT
TTTCATATAATTATGTTATTTATATTTAAATAGTCTGGGACCTTCTTCTG
ACAGGGAGTCTCTCCATATGTTTTTTTGCCATATGTTCACCTCTTTTAGA
TAACATTTTCTACCCAGTCTCTGGTTATCGTAACTGAAGATGCAACCTTT
GTTTTCAGCATAGTTAAAATTTGGTACAAGCTGTTCTAGGATGCTCCAGG
TGTAGATAATCCTGCATCTTTCTCTGCACCACTCCAGGCTGTATAGTTTA
AGTTCTTTGAGCTTCTCCCAATAGATGAGATGTTGAAGTGTAGGGATGCT
ATTCAGGTAAGATTTTTGAAGTGATTCCAGTTGTTGGATCAGATATCCTT
TTGAAGGTGACCACAGCTGGGAGCAATAGTCAATGTGTGGTAGTACCAGT
GACTTCCAAAGAGTTAGCATTACTTGACAATCTCTTGTTGTGAACGTTCG
ATGGATCCAAGCAATGATACTTTTGACTTTCTCGATCTGGTTTGTGATGT
GTTTGCTGTATGTCATGTTAACATCCAGAGTGACTCCTAAATCCTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTAGTTCTTCATTTTTTCCGTATTTAAGA
TGTTCAAACTTCAAGCCATTGAGCTGCATGTTGTTTAATGATGTCCATTG
ATACACCACATCAAGGTCGTTTTGGAGAAATTGAACATCAGTGTTATTAG
AANNCCTACCGGTAAGGAAGGATCTGATCCATTGCAGTAATTTGCCAGTT
ATACCATTTCTCTCGATTTTATGGAGTAAGATTGTATGATCTACACGGTC
AAATGCCTTGCCGAAGTCAAGGTAAATAACGTCAATGTTACGTCCTTTTT
CAATGTGATGGATGAGTCGTTCTGTGTGCCAAAGAAGTTGGCTAAGACAT
GATCTTCCAGACCTGAATCCATGTTGATTATCGTTCAAGAAGTCGTTTTC
TTCTAGATGATTTTGTAGCCGCTTTCTGACAATCTTCTCGAAGATCTTAG
TTACATGCGAAGTTAATGCTACAGGTCGATAGTTTTCAGGTAGGCCTTGG
TTGCCTTTTTTAAAGATGGGTGTGATGAAACTGGTTTTCAAAAGTTGAGG
TGTGTAGCCTTTGTCAAGTATATTTTTCCAGATTAGAGAGAGGGGATGCA
ATCTGTGACTTGACTTGTTTTAAGAAAATTGCAGGGAAGCCGTCTGGTCC
TTCTGCTGCATTGGAGGATAAAGTGTCGATCTCCTCTATAATATTTTGTT
CTGAGAAGTCATATATATCACTTAGATTTGGTTGATTTTCGGTGATTTCT
GGCAAGTTATAGTTGGGTAGTGGTTCCATAAAAACAGAGGTATATTGATC
TTGTAGAATGTTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTCTTGAAGTT
TAAGTTCAATATCGATAAGTTTTTGGTGAATCTTTTGAGTTGATTTCCTT
TTCTTAAGCTTTAGGCGTTTTCGCATCAGCACTCTTCGATCTCTGGGTAT
AATGGTTTTTGTTGATTTATTTGACATTCTTGAAGGGACTTGATTTTCAG
TGATAACCTTGATGCATTTATCAAGAAAAGTATCATATTGTTCATCTTGG
TCTGAAATGGGGTTTAAAATAGCATGCCAGTCAATATTTAGTAAATCTTT
TTTAATATTTTCCCAATTAATTTTGTGACTGTGAAAATTAAAATTGTCAA
ATTTGTTGTGTGAGGTTTTCTTGGTAAAATTTTTACAAGTTTTGTCGAAA
GTCATATGGGTTGCAACTTGGACCATATGGTGATCTGAATGAATGGTAGG
AGTGACCTGGTAGTCGAAAACCATATCTGGATTATTTGTTAGTAAAAAGT
CTAAAATATTTCCGTCTTTATGTGTTGGTTTATGAATTGTCTGATTTAAG
TTTAGGTGCATCATAAAATCTGTTAAAATATATATAAGCTGATTGTCACA
GCTTTTTGTTTGTGTGTATGTATCGTTGATCAATGTGTGTGGAATATTGA
AGTCTCCACAAATATAAATGTCTGGGGTGCAGTCGCTAATGGTATCAATC
TTTGAAGTTATTGAAGCGAGCATTTGAATGAACTCAGGACCATCTGATTT
GTGGATTTTGTTGGTCGGTTGTCTGTAAAGTATTCCAAGAATAACATTAA
GTTGCTTAGTGTATAGAAGGAGAGCTTCGTTTACCCCATTGGAGAATAGT
GGTTCGAAAAGAAGAGCAATATCATCCTGTAAATAGAAAGCCACTCCGCC
GCTGTATCTGCCATATCTAGATTTCTTTCTATTTCTGTTTTTCGAAATAG
CTTATATCCGTCAATTTCTAGCTCCGCCTCGTTATGACCTTTGGATAGCC
ATGTTTCTGTCAGTCCTAGAAAAATTTGATTCTCTGACTTCAAAATTTCC
CTCAGATATGGTACTAAGGACTGTTTGGTCTGAGGGCAAAGACCTTGGAT
GTTTAAAAACATGAAGTTTCTCAATGTTGCGTTATCTTGAAGTTTGGATT
GGATAGTTGGTTTGATTGGTTGAAGTTCAGATTCCCCAAGTGAAGTGGTG
GTGGAATTGTGGCTTGGGTTTGGTATCGTTGTTGATTTACGAGCTTGGAC
ACTTCTTGAGTAGGGTGAGTTTGTGGTGGTGGTTTGAGACTTTCTTTGAT
GAATGAGATCATTTGCAGGCGAAAGTTGTCCAGTATTTTGAGAAAATCCA
ATGAATCGTTAGTTTCTCTGTGGTTCTTTGTTGGAAGATCTGATTTCTTT
GATATGGATCTGGTCCCTTTGACGTGGGCAAAAGTGCAGTGGGTATTGAA
GCATGTACCACTTTTAATTGAGGAAGAGCACATTCTGGGGGGAAATTGTG
CACAGTTAGTCCCAGCATTACATCCTCTTGGACCTTTGTTTCCGTATTTC
AAGAGTTTTGGACAGGCTTTAGGATGGGTGTACTGGTAGTTTTTACCGCG
AATACCATGCTTGCATTCTCCTTTCATATAGAATCGACAGGTTGGAGGNN
NNNNNNNNNNNTTGGACAGGCTTTAGGATGGGTGTACTGGCAGTTTTTAC
CGCGAATACCATGCTTACATTTTCCTTTCATATAGAATCGACAGGTTGGA
GGTGTATTGTTGTTACTCTTGTTGAGATCTTTTGATTCTTCAGAGGGTTT
GAAGGTTGCAGATGTGAGCTTTGTGTTGTTCTCAATCTCTCTTAGAAATC
TTTTCTTCATGAAATCTGTTCTCCCTAAATGATTAACATCATCAAGGTTT
TTGTTTGCTTCTTCATTTTTATTGTGTAGAATAACATTTGGTGTAAGTGT
AAGTGGGATTGGTGGAAGAGTTCTTGATCGTCTTTGTAGAGGGGGTATCG
AGGTGTCTGATGAGAGATCAGTATTACTTTTGGCAGGTGAGGGTGTAGGT
GATTGTTTTGGAGAGTCAGTAACGATTGTAGTGTTAGTCGTTGTGGTTAT
TTGTGTAGGTGTTTGGGTAGAGTTAATGTTGACATTAACATTGGCAGCTT
TATATGTATTGTGTGGAAAGTTGATTGTGTTTTCCTGGCAATGTTGGCAA
AGATAAAACANACATTAGCATTGGCAGCTTTATATGTATTGTGTGGAAAG
TTGATTGTGTTTTCCTGGCAATGTTGGCAAAGATAAAACATACCAGGAAT
TTGGTATACCAAGTCTCTCAATTCCTCATCGTTATATACCTAGAGACCAG
ATGATTTATCACCTTTTTATTGGCTGAGAGAAAAAACTGTAAGGTGGTCT
AATGTCAGCATCCCTTTTCTAATTTCGACACGCTTCTTAGGTAGGAATAA
TATAAAGGTCGGAATCTTTTTTGCTTAGCGATCAGAGGAAAAATCTTTTG
TCTATCAGTGATCCCGACCTTCCAATTATTCCTACCGTAGAACCGTCTAA
TATCGACACCCCTCCTCTAAAGTCGACACCGGATCTCTGTAAAATAATCA
AAACAAACATTGAATGAAATTCTTGGTATCATTCTTGTCAAAAAAGTTCA
TCCATCAAACTAGAACAGTTAAGAACATTTGGAAAGTTTCTGTACGCGGC
CGAAATCAAAAAAATCATAACATCACTCATTGAAAAATGGCGTTCGTGTC
TTTTTGCACTTTTTTAGCCTAGACGATGTAGCAAACATAGTAAGTATAAG
CACACTGTGCTTTTAATTAGCTGAAACTTTTTTTTGCATCGGAAAAAACT
TTTTCAAACTTCAGCGATGATTGACCAATCTGTTACAACAGTTACAATGA
AAATTATCCAGCGCATTTTTTATCTTCTTACCTTCTTCATTTTCAATGAA
GCACTCAAAGTTTACTGAAGGTANAAACTGTTACAATGAAAATTATCCAG
CGCATTTTTTATCTTCTTACCTTCTTCATTTTCAATGAAGCACTCAAAGT
TTACTGAAGGTAAGCACAAAAGATATTCTTATAATTAATGATATTCATTG
AAACATGCTTCGTTGTGCACTGCGGTGGAGTGCATGACATAACTTGCGCG
GCAACTAACTTGCCTTCTGTTGGAAGATCATTTGTTGTCAAACAGTAAGT
GAAAATACAGGCGAGATATTAACAGTCCCATGTTTCGACCAATCGTCCCA
AGTTAGAGTAGTTGACAGTAGTATGTTACATATGTTGTAAATAAAGAACA
CGTGTTTTAAATAAAAATATTAATCTCACCAGAGTCCCCTGACAGAAAAT
AGCAATGACTCGGATGAAACAAGGCATGTCCCAAATATATTTTGCGTGAC
GCACACCGCTTCCCATTATTCATTAACTTTCATATATAACTCAAAAGAAT
CGTATCAACGAGGGGATTTCGAAAAGTGCTGGGTCAAAGATTTACATCAA
GCCAATCTCAAGATATCGGCCAAAAACTGATTTTGACGTTATAAAATACA
TCGAAAAAACACGTCAAAAAGACAATTTAAATGACATCATTATTGAAAAA
AGGCGATAATTTCGATTAACTTACTACAATCAAAGCAAAATTTTGACTGA
AGATGTAAATTAACGATTCTAAAATATCTCATGAAAAAAAATTTGAAAAT
TCATGATGACGTCAGCATTTTTTGACGTATTTTAATTTTTTCCGACAACA
AATGACGTCATTCAAATTTTCTGAAAATTTTGAACAAATATTTCAGAATC
GTTAATTTACAACTCCAGTCAAAATTTGGTCAAAGTTTTCGCTGTTTTTC
AATAATGACGTCATTTAAATCTTGATTATGATGACGTGTTTTTTCGATGT
ATTTTATAACGTCAAAATAAATTTTTGACCGATATCTTGAGATTGGCTTA
ATGCAAATTTTTGACCCAGCACTTTTTGAAATCCGCTCGTTGATATGATT
CTTTTGAGCTTTATATGAACGTTAAGGAATAATGGGAAGCGGTGTGCGTC
ACGCAAAATATATGGAACATGCCTTGTTTCACCCGAGGACACAATCGCTT
CATCATATCCCATTATATCTCCTGCATCACCTTGGGTATGATAACAAGGA
CTGATGAAAATAGCACCGAAAGGATTATATTTTATAAATACCGGGTGTGT
AAAAAAAATGCCCCTATTTTACAATCTATGATGTACATTTTTCTATTCAG
TTGAACGGTTTGAATCTCTTTGTTAGTATTGTACGTTTTATTTCCAAACA
TTTCAAAAAGTTTGGCAAAGTTACCTCAAATGAATTTAAAGTTATGAATA
TTCTCACAAGATCACTACTTTTTGTGTTGTTTACAGTAGCAATTAATTGA
CGTCAAAGAAGACGTCAAAGAAGACGTCAAACCTTTATATTCTAGCTTTC
CTATCAGCTGTAAAAACCGTTTTAAAGTGAAATTGAAGTTTAAGCTAGAT
GTAGAAGGGAATATTCATACTAAACCAAAATCTTTTAATGTCAAACTTAT
CTTGTTTTCAAATTAAAGGGGTTTTGGAAATCTTTTCGCAGTGTTATCGT
AACTTCTCAAGGTGTTCAAGGCAATGTAAAGCATTTCTTAGGAAAACAAA
TTTTCATCAATTCGTTTCATTTCCATTATTTAATCGATCATATTATATTA
TACAAGCTTTGTTCTGCTTCTTTAACTTTTTGCAAAACAGTTGAACTGAA
AACCTAAGGATTTTGATGTACAAAAGGTAATAACATTGGTTCATTTCTGC
CCCATTGGCGATTTGAAAGTATTTTTTTGTCGTCGCAATTGACGTTAAAA
AATGGCTTGGTTGGAACTAGCTAGAATCTATCAAATATTGACCTTGGAAC
AAAACTTAACCTATGAAATGAAAAAATGATGCCATTTTAATGTTTTAAAA
GTAGCGAGACAAAATAAGAGTGTAAAAACGAAGCGTACTTAAGTTCCTTG
TTCCATATGGGGAAATTTAACTATGAAAATCCGTGAACAATGAAAAATTG
ACCTAAGTCAGCAGAATTATTATAAAGTCACTTCAAATGAACATACAAAA
GTACAATTTTCACCAAGGGTAAAGAATTAAATTTTAAAACTTCCCTAAAA
ATTTCATTTGTCTTTGTTCAATAGAAATTTGTACGCCAAAAATCGAAAGA
TAGGCGTGTTTTTTGACGCACCCGGTATTTGACTATTTTTATCCCCTTCT
TTGTATTTTTGAGAAAAATGAAGTCACAATCTTTGTATATTATTGTTTTT
AAATCATGTCAATCTATATCCACTTGTGCCGTCAGCATATTTAGCATGAA
ANTATTGTTTTCAAACCATGTCAATCTATATCCACTTGTGTCGTCAGCAT
ATTTAGCATGAAAATATATTTTGTTGTAAATTGGTGTACACACCTCATAT
TTTGTGATGAAGTTATTATCTTTATAATTTTAAGTGTCACTTTGTCAATA
TTTGGGGTTGATTTAAATAGCATTTTTGTATACAAAATTTATTTAGTTAT
TAATTGTGCAAAACGAAACAAAGACTAATTCTTTTAATTACTACTTTGGC
TAGACAATTCAGTAGCTGTCTTTTAAAACACAAATCATTAGACCTTTTGC
TAGCCGCAATGCCATAGCTCATTATAAATCAGCAGCAAAAACATTACATA
ATGACTCCAAAACATTTACATAATCTTAGCGATAGAATAACTTGCAATAG
CGGATCTAATTCTATTTCTTTTTTGGAGTGTTTAATAATTTTTATCCTTA
TTGATCTTGCTATAGAACTGTCAGCATGAGCTAGGCTAGAAAGTACAATT
GGCTATTTGACATTTATGGACTTTTAGGCACTTCATGCTGACATTCTTTC
TGGGGATGGGGTACCCCCGTACTTAGGCAAAAATGGGCGCTGGGTATGTG
AGGGCGGTAAAGGTTGGTTTCTTCACCTTTTAAAGTCTCTCTGAGGGTCG
GAAAAATCAGAAAGTTTAAAACTTAGTCCAGCTTAGTCTCTAAAGGTCGG
AAAATTCACAATTGTTAGGTATATAATTCTTTTGATTTCAAGAGAAAAAA
TTGTAAAAAAGTCTCTCTAAGGGTCGTTTTGGATGTTCCATCTACACATA
CCCCTTATCTGCCAACCCTCAGCAATTAATGACTCAGCAATTTGTGTCTT
TAAAATAAATTATTTTGTGCACTTGCATTTACCAACCATTGTTTGAATTC
TCAGATCAGATTAAAATACAGATATGACCTAGGTAAATCAAACCTAGAGA
CCATACAATAGACAAAAAATCAAAACCTGTGATTGTGAAATAGTTATTCT
GGCTAGAATTGGCCCGATTAGGATCTGGTCTTATATTTTTGAAATAATAT
TTTTGAAATAATATTTATCTTAGATGACTTCCAAAGAGGTGCATACATCA
ATTTTGACTTCGCTGTTGGTAAGAAAAAGCTAATTATGAAAGCCCTCACT
GTCACAATCAACTGCTCTTATTTCAGAACATGAACTTACGTTTGCGTCTA
CTGAACACTTGTCCCTTCATTGAACCTTCAATCAATCAGCAATCAAGTTG
TCGTAGAACGTTACTTTCATATTTTTCATAGACCATATACTGTAATTGCA
GTATTTACAAGAAATCAAATTCAAGATTCAATCAGAAAATACGCATATTT
TGTACATAATTTATCATAATTTTTAAATACGCAGATAAATTTTATTTTCC
TATCTATCAAAAGCGTGTTCAATTTTAGTACTACAAAACTTGTCTATTTT
TAAGGCTGGGAGTTGCGGTGGGATATCAACAGACATTGTTTTATTTCCAC
TTGACTCGATCAAAACAAGAGCACAAACACAAGCTGGTTTTTGGAAGAGT
GGTGGATTCAAGGGCCTTTTTCGTGGTGTTGGCTCAGTTGCTCTGGGCTC
TGCTCCGTCAGGTAGTTTTTCTTCAATAAATAGAAAATTAAGAAGCTTTG
ATAAAAGCTAAATGCTATCTCTTCGGACTTACTTTGGAGGTAGCTCATTA
GTTAATTCTGATTTTTTGCACAATGATGAAAAATGACATTACAGAAAATA
TGACTGCCCCTGATTTTCGAGAAAAAATGTTTTTGGATAAATTTGGGCCA
AAAAGTGCCTAAAAATAGGATTTTTTGGACTTTAGTGAACTTTTTGTAAA
ATTGCTTCATTATTTTTTCTGCAGAGACAGTGGGCAAGGTTCTCTAAAAA
GTGGCTGAACCTCTTTTGGCCAGGCTGTAAAAACCAGATTTTTGTATTTG
GGGAATTTCCCTTCTGTTATTTTTAGGGAAAGTTACGTTTTTCAGGATTG
GATTGGTATTTTTATCTGATCTTTTTAGTTTGCATCTTCTTATTATTGTT
TCCATTTTTCTATTTTATTACATTAGCCTTCAGATAGGTCCCTTCAGCAC
GGAAGCTTGTTAAGACTAACTTAAAAGTATAAATTTTGTTATGTCATTAT
GTATTGAAAATATGCATATAATTGAGTTTAAGTTTCCTACATTATCAACT
TTTCTGTTATAGGCGCATCCTTTTTCTTTGCATATGAGGGCGTAAAGAAT
TTAACAAAATCGAACATGTCACCTCTGGCTTCTCATTTACTTGCTGCATC
TTGTGGTGAAGTTGTAAGTATCAAATGATCCCAAGCTTAAAAATTGTTTA
GAAATAATTAGTTATTCTTACTTTAAATCGCGCTATTCCATAAAATTTCC
ATACAGGGGGGTGGACGAACCTTTTCAAATGAAAACAAATTTCTTGGAAA
AGTGTAGATACCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTACCCCCCTGGAAAATTGCAAAAGAACCCTTGGAAAAA
TTTTTTTTCATGTCTTAAAGTGAGGGTGAACGAACTAAAATCAGCTGTTC
ACCCCCTGGAAATTCAAGAATAACTTATTACCTCCTGGAAAAATGAAAAA
ACACTTCTTTAGACCCCCTGGAAATTCTTCTCGGATTATCCCCTGGAAAT
GTGCGTCTACCCCCCCCCTGTATGGTCATAAAATGAAATGGCCCATTGAA
TTAGAGATTTTTTAGAGATTTATTTGTCATCAGATAGATTAAATTCCAAG
GCACACCCAGAAGTACTATTGGAAAAACATATCTAACCATTTCTACTAAC
AATCTAAAAGTATTCAGATTGTATCTCCTAGTTGTGTTGTATGCTTTGGA
CACCTTTTGAAGTCGTAAAACAAACAGCACAAACCACTGAAGGAATGAAT
AGCCTCAGTGCTTTTCGGCATATCAAAAAGAAATATGTAGGTTTTTTTTT
ACCTTTTTTGATATTTAATGATGATTTCAATTTTTCATATTCTTTAGTTC
TCATGCATGTTTCGTATACCATTTGAAGTTGTCAAGCAAACTGCTCAAGC
AAATAAAAGCTTGAATAGTCTCGATGCATTGAAATTCATTGTGAAAAGAG
ACGTAGGTTGTTTTGAGATTTTTATTAACGTTTGTTTTATCCAGATCAAG
GAAAGATGAACTTTCATTTAGTTTAAGCTTGTACCAATTTTTGCTCTGCT
TCTTCATTTATCATTTATTGGTTATTTTTCTCAAATTTTGTTTTCCATTT
TACTGAAGCTATTGGAGTCCAACCTTTGCTGCATGCTTTGGATTTCTCGA
TATTATACCCTCGAAGAATAAATTTTCTAAACTTTACTTTTCAGGGATTA
GCTGGCTTAACTCGAGGTTTCTTCAGCATGGTATCGCGAGAGGTATTTGT
ATATTTTTTCCTTAGATAAAATTTTATTTGATGCAAACTATAACTAGCTA
TAACTAAAACAAGAAAAATTTCATATTCAACTCCTTTAATATACAATTTT
CTTCTTTTTTTAGATTCCATTTACTGTCATTCAATTTCCTCTTTGGGAGC
ACTTGAAAGTGAGTATTATGAGCATTTATGATCATTCTGTAGCCCCATTA
TTTCCTCTTTTGGAACACTTGAAAGTGAGTATTATGAGCATTTATGATCA
TTCTGTAGCCCCATTATTTCCTCTTTTGGAACACTTGAAAGTGAGTATTA
TGAGCATTCATGATCATTCTGTAGCCCCATTATTTCCTCTGTTGGAACAC
TTGAAAGTGAGTATTATGAGCATTCATGATCATTCTGCAGCCCCATTATT
TCCTCTTTGGGAGCACTTGAAAGTGAGTATTATGAGAATTTATGATCATT
CTGTAGCCCCATTATTTCCTCTTTGGGAACACTTGAAAGTGAGTATTATG
AGCATTTATGATCATTCTGTAGTCCCATTATTTCCAAACTTTCCTTGTAA
CCTTAACTTGATTTAGATAATTCAATTCCTTATAGCAATTAAACTTTATC
GCTCTCAAGACAATTGACATTTCAAGTTCATCCCCTTGACTTTTACTTCT
TGCTCCAAATTTCTGTCCAACCTTCAAAGTGAAATGGAACTTTGATATAC
ATCTTTTATTGTGGTTGCACATTCTTGTTGGGGAAATAAAAGAGGCACAA
AAATTAAGGTATAAAGGAAGCTCTGCCCTCTGGGTTTTCTTTTTAAAACT
TTTGAATGATTTTTTCCATTTTATAGACTTTAGCAGCAAAGGATGACAAA
CCATGCACCCCGTTGGCATCTGCTGTGGCAGGTTCATTTGCTGGTGGTTT
TGCTGCGGCGCTCACTACACCCATGGATGTGGCCAAAACAAGAATCATAC
TGGTTCAGGTGAGGGAAATCAAAGAAGAAAAATGTTGATTGTTTTTATGA
AATGGCCGTCATCAAACCTTTTGGGGCTATTTTTTGTTTTGTTTTTGTTG
TCTTAACGTAAATCTAGCCATTTTTTGCATAAAACGAAACATTTATTAAA
CTCTAAAGGGGAAGAATAGCAAGTTCTTTAATTCCAGAACCCCTTAAATT
AAAATTTTTAGAGTACTACATTGCGAGATAATGAGCTTTGTTAGAAGACT
TAAATTTTCTGGTGTTTTTAAGTTAAATTTCACTACCCAAACAGTATAAT
CCTTCAGCTTATACCAAGAAAGTAACAAAATTCTGTTCTTTGCTTCTTTT
ATTTTTAATGGTGTCTTAGTATGTACGAGTGTTATGATTCTTCGGTTTTC
CAAGCTTCTGAATCCCATTTAGTTATCAGAAAACTTGAAATTGGACACTA
AAAGAACCAAGTAGTTCAAAAAAATAAATCCTAATTATGACTCTTCACTT
TGAGCCTTTTACTGTATCATAATAATGATTTCTTTTTTCCAAATAGAATG
AAGGAAGTCATGGTGGAAACCCTTATAAAGTGATGTACAGTATTGGCAAA
ACTGAAGGGATAGCAAGGTTTACTTTTCTCCTTATTTTTTATCAATCTTA
CGTTTTATTACACTTGTTCCCTAAACATTCATCAATATTCACCAATATGC
TTAAATGGATATTGATATAATTTACCACCTATTTACTACCACCTAAAAGT
GGATTTGATTTTATTATATTTAAGTCAAAACAGATTCTGTTACGGTTCGA
CCTTTTGACCAAAACCAAATGTCCTTTTTTGACTCCACTTAGTTTATTTA
AACAAACTATACTAGATTTCTTTACTTATGTTTTGTTTGTAGGTTGTTTT
CTGGCATTGTACCTCGTGTTGTCTGGATATCTATTGGTGGATTCATATTC
CTGGGAACATATGAAAAGTCAAAGCAGATTCTCCAGGATCTTGGTATTTG
AAATGTGTGGGTTTGCTGTGCAGTAGTGTGTGGTGTAAATGGGTTCGAAA
TGGATTGTAATCTCTGTTTCAAATCAGCCATCACTCATCCTTCGATATTT
TTGTGACGTGTGATAGATGTGTGAAGACAGAACGACATGATTTAATAACA
TGTAAATTTCAATATCGTGGATACTATTGGCTTCTATTCTAAAAGTTGCA
TACAGTATCCTGTCTCCAGATTGTTTGCCAATGACTGGAATAATGAATTT
TTAGTGCCTTTAAATCTACAGAGACTGACGAAGCTAATCCAAGATGGCAC
TGTCAAATATTTTTTTGGCTTAAAAATATATATAAATTATTTTATTTAAA
AGAAATGCATTTTCTACGTTCAAATATTAAATAGAATGTTTAAGAGTTTT
GCTATATATTTTATAAATTTTACAACAAATTTGTTATACATATTTTTCAG
ATTTTTATACATTATAAGATAGAACAGTGAACAGAGTTAATTTTATTTCA
CTTAATTTTAAACGTCGGGGGAACTTCATCAAAAGTCAAGAGTGGATTTA
CAGTGCATTTCTGATATTTTGAAAAACAACCCTTAACCGCCGCAAATACC
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010413XLOC_010413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018627-exon-sc0000303-1575043694:157286..157490TCONS_00018627-exon-sc0000303-1575043694:157286..157490Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:147173..147217TCONS_00018627-exon-sc0000303-1575043694:147173..147217Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:146680..146836TCONS_00018627-exon-sc0000303-1575043694:146680..146836Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:145978..146078TCONS_00018627-exon-sc0000303-1575043694:145978..146078Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:145039..145143TCONS_00018627-exon-sc0000303-1575043694:145039..145143Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:144749..144796TCONS_00018627-exon-sc0000303-1575043694:144749..144796Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:144583..144627TCONS_00018627-exon-sc0000303-1575043694:144583..144627Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:143783..143914TCONS_00018627-exon-sc0000303-1575043694:143783..143914Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:143174..143244TCONS_00018627-exon-sc0000303-1575043694:143174..143244Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1575043694:142189..142898TCONS_00018627-exon-sc0000303-1575043694:142189..142898Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:157286..157490TCONS_00018627-exon-sc0000303-1510915933:157286..157490Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:147173..147217TCONS_00018627-exon-sc0000303-1510915933:147173..147217Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:146680..146836TCONS_00018627-exon-sc0000303-1510915933:146680..146836Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:145978..146078TCONS_00018627-exon-sc0000303-1510915933:145978..146078Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:145039..145143TCONS_00018627-exon-sc0000303-1510915933:145039..145143Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:144749..144796TCONS_00018627-exon-sc0000303-1510915933:144749..144796Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:144583..144627TCONS_00018627-exon-sc0000303-1510915933:144583..144627Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:143783..143914TCONS_00018627-exon-sc0000303-1510915933:143783..143914Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:143174..143244TCONS_00018627-exon-sc0000303-1510915933:143174..143244Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1510915933:142189..142898TCONS_00018627-exon-sc0000303-1510915933:142189..142898Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:157286..157490TCONS_00018627-exon-sc0000303-1491911889:157286..157490Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:147173..147217TCONS_00018627-exon-sc0000303-1491911889:147173..147217Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:146680..146836TCONS_00018627-exon-sc0000303-1491911889:146680..146836Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:145978..146078TCONS_00018627-exon-sc0000303-1491911889:145978..146078Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:145039..145143TCONS_00018627-exon-sc0000303-1491911889:145039..145143Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:144749..144796TCONS_00018627-exon-sc0000303-1491911889:144749..144796Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:144583..144627TCONS_00018627-exon-sc0000303-1491911889:144583..144627Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:143783..143914TCONS_00018627-exon-sc0000303-1491911889:143783..143914Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:143174..143244TCONS_00018627-exon-sc0000303-1491911889:143174..143244Clytia hemisphaericaexon
TCONS_00018627-exon-sc0000303-1491911889:142189..142898TCONS_00018627-exon-sc0000303-1491911889:142189..142898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:142189..157490 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.44438	3.62331	1.54983	1.27883	15.4128	10.2758	8.5715	11.9353	6.54377	9.48507	7.32337	4.78208	5.23447	4.45148	5.15467	4.23849	11.1953	9.78883	4.36488	5.02934	9.46864	9.92625	14.9342	15.1336	7.73028	7.75729	6.6986	5.6944	11.1346	11.3139
Blast
[Close]
BLAST of TCONS_00018627 vs. Swiss-Prot (Human)
Match: SAMC (S-adenosylmethionine mitochondrial carrier protein OS=Homo sapiens GN=SLC25A26 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.883e-66
Identity = 127/265 (47.92%), Postives = 181/265 (68.30%), Query Frame = 2 
Query:  236 LTSLLAGSCGGISTDIVLFPLDSIKTRAQTQAGFWKSGGFKGLFRGVGSVALGSAPSGASFFFAYEGVKNL----TKSNMSPLASHLLAASCGEVFSCMFRIPFEVVKQTAQANKSLNSLDALKFIVKRDGLAGLTRGFFSMVSREIPFTVIQFPLWEHLKTL-AAKDDKPCTPLXXXXXXXXXXXXXXXLTTPMDVAKTRIILVQNEGSHG-GNPYKVMYSIGKTEGIARLFSGIVPRVVWISIGGFIFLGTYEKSKQILQDLG 1012
            + +L+AG   G+S D++LFPLD+IKTR Q+  GF K+GGF G++ GV S A+GS P+ A+FF  YE VK      + S ++P+  H+LAAS GEV +C+ R+P EVVKQ AQ + S  +      I+  +G+ GL RG+ S V REIPF+++QFPLWE LK L + + D       SAV G+FAGGFAAA+TTP+DVAKTRI L +   S   GN   V++ + +++G+A LF+G+ PR+  IS+GGFIFLG Y+++  +L ++G
Sbjct:    7 VAALVAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFHGIYAGVPSAAIGSFPNAAAFFITYEYVKWFLHADSSSYLTPM-KHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLLLEVG 270
The following BLAST results are available for this feature:
BLAST of TCONS_00018627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SAMC1.883e-6647.92S-adenosylmethionine mitochondrial carrier protein... [more]
back to top