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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018608 ID=TCONS_00018608|Name=TCONS_00018608|organism=Clytia hemisphaerica|type=transcript|length=3092bpRun BLAST on NCBI protein sequence of TCONS_00018608-protein >TCONS_00018608-protein ID=TCONS_00018608-protein|Name=TCONS_00018608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp MLLIIQLTMNYLHARGIAQRFTKGRRVSIIPNEETKEQEGASTLSERYQLRun BLAST on NCBI transcript from alignment at sc0000303:66879..87586+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018608 ID=TCONS_00018608|Name=TCONS_00018608|organism=Clytia hemisphaerica|type=transcript|length=20708bp|location=Sequence derived from alignment at sc0000303:66879..87586+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000303:66879..87586+ >TCONS_00018608 ID=TCONS_00018608|Name=TCONS_00018608|organism=Clytia hemisphaerica|type=CDS|length=11187bp|location=Sequence derived from alignment at sc0000303:66879..87586+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018608 vs. Swiss-Prot (Human)
Match: GRAM4 (GRAM domain-containing protein 4 OS=Homo sapiens GN=GRAMD4 PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.378e-44 Identity = 125/391 (31.97%), Postives = 200/391 (51.15%), Query Frame = 3
Query: 495 LSVRRLKENVARFSEAIQPIKNGYKFFDDLFSWQNPWFTISVFIIFIYSLWLEVHIPLVLMLLIIQLTMNYLHARGIAQRFTKGRRVSIIP--NEETKEQEGASTLSERYQLVLSIAKTVQNTLGQLSDSLEKLQNLYRWRHTEAXXXXXXXXXXXXXXXXXXXTGALLHFIVLTSALKLFIITPIYTRFPKVQRRYDDFMRLWHELPTHAEHQRQEAMDAEDGAKXXXXXXXXXXXXXXXNNQTNNTNEDGSNGNQATGSTSDSNVSWGTII--FCDRFQLPRAEAPFPDWVEGRRCTLM--DKENPFTSMKHGRLYLTANFLCFERNQF-HSKKNIAISLAEIIKVKKSKPITFMPGPGMSIEVEVTGISKPYVFAAMMGRDEALESIV 1646
LS RRL EN+ R +P+ N K L W + + + F +++ ++W IPL L L I++L++NYL ARG ++ SI+P +E + + T+SE++QLVL +A+ QN G+++D LEK++NL+ W E ++KL +L F+ SCF + + L + +K F+I I+ R P+++ +YD +W LPT + Q +E A + QT ++ + G D+ T F + F L E P G RC L+ D++ P +++G LY+T N+LCFE ++ SK+N I L +I ++K K ++ +PG GM I V KP VF AM+ RDEA E+I+
Sbjct: 196 LSARRLTENMRRLKRGAKPVTNFVKNLSALSDWYSVYTSAIAFTVYMNAVWHGWAIPLFLFLAILRLSLNYLIARGWRIQW------SIVPEVSEPVEPPKEDLTVSEKFQLVLDVAQKAQNLFGKMADILEKIKNLFMWVQPEITQKLYVALWAAFLASCFFPYRLVGLAVGLYAGIKFFLIDFIFKRCPRLRAKYDTPYIIWRSLPT--DPQLKERSSAAVSRRL----------------QTTSSRSYVPSAPAGLGKEEDAGRFHSTKKGNFHEIFNLTENERPLAVCENGWRCCLINRDRKMPTDYIRNGVLYVTENYLCFESSKSGSSKRNKVIKLVDITDIQKYKVLSVLPGSGMGIAVSTPSTQKPLVFGAMVHRDEAFETIL 562 The following BLAST results are available for this feature:
BLAST of TCONS_00018608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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