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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018586 ID=TCONS_00018586|Name=TCONS_00018586|organism=Clytia hemisphaerica|type=transcript|length=2330bp
CAAACCCTGAATTGCGAAGTATAGTCAAGAGGATCGACATTTATATAGTg
tgatgaaaaaaaatatcttcCATGTAAAACCACCAGTAGTGTTTTTATAG
GATTACGTCATGCAAAACAAAACGCcgcttcaacaacaacaacgttGGAG
AAGAAAATGGGGGAGAGCAAAATAGTAATAAAAACaccaacaaatttgtt
ttaagTCAGATTTAGAGATTTTTAGCTCGCTTCATCGTCAAAGTACGTAA
TCCTGGTGAGAAAAAAAACTCTTTGAAGGACAAGAAAGGAAAGAGGAAAA
GACTGTTTCGGTTATAACAAAGCAGAGGAAAGGGATTCGTTTTGATCAGT
TGAAAGACTTTTCCCGCCCCTCACTCATTAGTCGCTCGTTAGACTGTTTG
TTTATGAAGATTGTTCGGATCAAGACATTTATTTTTCCAGCggtaaaaaa
agtttaattcaGGGAGAGGTGCGGTAAACTATCATCAAAAGGAAAGATCA
ACCAACTTTAATTAGTCACTTGGTTCCAGAAAACCAGAAGGACATTTTGC
AACAAAGAGAAGGTCAATGCCTGCAAAATGAAGAAGTTATtgaacaaatt
gattttcttggCTTTGCTTTGGCAACATATTAATTGCATCTACACAGGAT
GTGATGAAGAAGCACGCAAATGGTGTGAACAATCGCAGTGTTCCACAGGA
TGTAAATGTCTGAACAAACCCGTATGCAAACAAGCTTGTACTACTGAACA
ATGTTCTGAACTCACCTGCTCCTCACACAAAGTTTGCAGACAGTCTGTCA
TCCCGCCAACTAATAGCAACAATGGAAAACCATTGGTAACAGTTCATATC
CAAAGCTTGATAGCACGTGCACCTAACATTGAACAATCTTGTTCACTCGG
CATTTGTGATAACATGACAGCTCTAAAAGTAGACGGACAAATTTCCAAAG
CGTTGCAAGTATGCAATGGTCGCTGTAATAAGATACTATCTAATGTCGAT
TATACTCGACAACTGGCAGTACAGACCGATCTAATGCAGTGTGTGAATAC
GACAGTTTGCGACCAAGTCTGTGTAATTGGAAGGTGTCAAATGATGTATT
GTAATTCGAAGGAGTGCAAACAAAGGTGCTCGGTTGGAAGTCAATGCCAA
ATGACGTGTGGTCCACACACTAAAGTTTGTGAGCAAACGTGTGAAATGAA
CAGCAGTTGTCAGATCACTTGTTTAGGAGAAAATTGTAGGCGAGAGTGCA
AAGATGCAGAGTTGTGTGAAATCATGAACAGCAATCGAacgtttgaaaaa
tggaaaagtaGCAACTCTTCAACAACAAANGGCGAGAGTGCAAAGATGCA
GAGTTGTGTGAAATCATGAACAGCAATCGAacgtttgaaaaatggaaaag
taGCAActcttcaacaacaaaaaaaagtggggaggTCAATAACAATACTC
TTCATCCCAATACTACACATACACCAAGTCATAATACTGAGACAAGCTTT
TTGGCATCGACTACTACTGGCCATTCAGGGAATAATATGACGGAGAACAG
CAGTAACAGTACTGACCACTCAACAGACAGCCCTTTGAAACCAACAAACC
CACGGACGTTGGAGAATAANACCACTCAACAGACAGCCCTTTGAAACCAA
CAAGTCCACGGACGTTGGAGAATAAtataacaaagaaaaatatgaacACA
ACAACAACTAGTTATATAAAGGAAGTTATGACAACAAATTCAAAGCAAAC
AGATCATAAAAAAGAGGCTCTGAACGAAACAGATATACCGATAACGGAAA
CAGGCCGTCCTTTCATAGGTAATACAACAGATGGTGATATTTATCACCTC
GTCAATGGAACCACCACCAATCTTTCGATGATAACCACACCAAATACACA
CTTTAAAGACTTGACTACTAACCAGACAACATCTCCATCAAACTCAAAAA
ACCATTCTAAGACACTAACGACGGCGATTCATACACCGTCATATTCTCCA
TCCGATGAATCTAAGACAACTAATCCGACTGGAACATCAGTCGGTATATC
AACGTCTAGCCAACAAAATATTTCTGACAAGACAAGAAAACCTTTCACGA
ATACCCCAAAACTGACTAGTAAAAGAACGAACTCATTATTAACCTCCGCA
AGAAGAGCTTCGTCGACGCCGAAAAGAACTGCATACAAAATGACAACAGA
TAACAACACCTCGTCTAGAGGTTTTTGCATAAAATATAATATACTATTGT
TTTTATTAGTGCATATACACATAGTTTTTGGTATCATATTATAATTGATA
ATATAAATAATGTAGATAACATAAGAACAC Run BLAST on NCBI protein sequence of TCONS_00018586-protein >TCONS_00018586-protein ID=TCONS_00018586-protein|Name=TCONS_00018586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MKKLLNKLIFLALLWQHINCIYTGCDEEARKWCEQSQCSTGCKCLNKPVC
KQACTTEQCSELTCSSHKVCRQSVIPPTNSNNGKPLVTVHIQSLIARAPN
IEQSCSLGICDNMTALKVDGQISKALQVCNGRCNKILSNVDYTRQLAVQT
DLMQCVNTTVCDQVCVIGRCQMMYCNSKECKQRCSVGSQCQMTCGPHTKV
CEQTCEMNSSCQITCLGENCRRECKDAELCEIMNSNRTFEKWKSSNSSTT
XGESAKMQSCVKS Run BLAST on NCBI transcript from alignment at sc0000301:65522..67851 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018586 ID=TCONS_00018586|Name=TCONS_00018586|organism=Clytia hemisphaerica|type=transcript|length=2330bp|location=Sequence derived from alignment at sc0000301:65522..67851 (Clytia hemisphaerica)
GTGTTCTTATGTTATCTACATTATTTATATTATCAATTATAATATGATAC
CAAAAACTATGTGTATATGCACTAATAAAAACAATAGTATATTATATTTT
ATGCAAAAACCTCTAGACGAGGTGTTGTTATCTGTTGTCATTTTGTATGC
AGTTCTTTTCGGCGTCGACGAAGCTCTTCTTGCGGAGGTTAATAATGAGT
TCGTTCTTTTACTAGTCAGTTTTGGGGTATTCGTGAAAGGTTTTCTTGTC
TTGTCAGAAATATTTTGTTGGCTAGACGTTGATATACCGACTGATGTTCC
AGTCGGATTAGTTGTCTTAGATTCATCGGATGGAGAATATGACGGTGTAT
GAATCGCCGTCGTTAGTGTCTTAGAATGGTTTTTTGAGTTTGATGGAGAT
GTTGTCTGGTTAGTAGTCAAGTCTTTAAAGTGTGTATTTGGTGTGGTTAT
CATCGAAAGATTGGTGGTGGTTCCATTGACGAGGTGATAAATATCACCAT
CTGTTGTATTACCTATGAAAGGACGGCCTGTTTCCGTTATCGGTATATCT
GTTTCGTTCAGAGCCTCTTTTTTATGATCTGTTTGCTTTGAATTTGTTGT
CATAACTTCCTTTATATAACTAGTTGTTGTTGTgttcatatttttctttg
ttataTTATTCTCCAACGTCCGTGGACTTGTTGGTTTCAAAGGGCTGTCT
GTTGAGTGGTNTTATTCTCCAACGTCCGTGGGTTTGTTGGTTTCAAAGGG
CTGTCTGTTGAGTGGTCAGTACTGTTACTGCTGTTCTCCGTCATATTATT
CCCTGAATGGCCAGTAGTAGTCGATGCCAAAAAGCTTGTCTCAGTATTAT
GACTTGGTGTATGTGTAGTATTGGGATGAAGAGTATTGTTATTGAcctcc
ccacttttttttgttgttgaagagTTGCtacttttccatttttcaaacgt
TCGATTGCTGTTCATGATTTCACACAACTCTGCATCTTTGCACTCTCGCC
NTTTGTTGTTGAAGAGTTGCtacttttccatttttcaaacgtTCGATTGC
TGTTCATGATTTCACACAACTCTGCATCTTTGCACTCTCGCCTACAATTT
TCTCCTAAACAAGTGATCTGACAACTGCTGTTCATTTCACACGTTTGCTC
ACAAACTTTAGTGTGTGGACCACACGTCATTTGGCATTGACTTCCAACCG
AGCACCTTTGTTTGCACTCCTTCGAATTACAATACATCATTTGACACCTT
CCAATTACACAGACTTGGTCGCAAACTGTCGTATTCACACACTGCATTAG
ATCGGTCTGTACTGCCAGTTGTCGAGTATAATCGACATTAGATAGTATCT
TATTACAGCGACCATTGCATACTTGCAACGCTTTGGAAATTTGTCCGTCT
ACTTTTAGAGCTGTCATGTTATCACAAATGCCGAGTGAACAAGATTGTTC
AATGTTAGGTGCACGTGCTATCAAGCTTTGGATATGAACTGTTACCAATG
GTTTTCCATTGTTGCTATTAGTTGGCGGGATGACAGACTGTCTGCAAACT
TTGTGTGAGGAGCAGGTGAGTTCAGAACATTGTTCAGTAGTACAAGCTTG
TTTGCATACGGGTTTGTTCAGACATTTACATCCTGTGGAACACTGCGATT
GTTCACACCATTTGCGTGCTTCTTCATCACATCCTGTGTAGATGCAATTA
ATATGTTGCCAAAGCAAAGccaagaaaatcaatttgttcaATAACTTCTT
CATTTTGCAGGCATTGACCTTCTCTTTGTTGCAAAATGTCCTTCTGGTTT
TCTGGAACCAAGTGACTAATTAAAGTTGGTTGATCTTTCCTTTTGATGAT
AGTTTACCGCACCTCTCCCtgaattaaactttttttaccGCTGGAAAAAT
AAATGTCTTGATCCGAACAATCTTCATAAACAAACAGTCTAACGAGCGAC
TAATGAGTGAGGGGCGGGAAAAGTCTTTCAACTGATCAAAACGAATCCCT
TTCCTCTGCTTTGTTATAACCGAAACAGTCTTTTCCTCTTTCCTTTCTTG
TCCTTCAAAGAGTTTTTTTTCTCACCAGGATTACGTACTTTGACGATGAA
GCGAGCTAAAAATCTCTAAATCTGActtaaaacaaatttgttggtGTTTT
TATTACTATTTTGCTCTCCCCCATTTTCTTCTCCaacgttgttgttgttg
aagcgGCGTTTTGTTTTGCATGACGTAATCCTATAAAAACACTACTGGTG
GTTTTACATGgaagatattttttttcatcacACTATATAAATGTCGATCC
TCTTGACTATACTTCGCAATTCAGGGTTTG Coding sequence (CDS) from alignment at sc0000301:65522..67851 >TCONS_00018586 ID=TCONS_00018586|Name=TCONS_00018586|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000301:65522..67851 (Clytia hemisphaerica)
TCATGATTTCACACAACTCTGCATCTTTGCACTCTCGCCNTTTGTTGTTG
AAGAGTTGCtacttttccatttttcaaacgtTCGATTGCTGTTCATGATT
TCACACAACTCTGCATCTTTGCACTCTCGCCTACAATTTTCTCCTAAACA
AGTGATCTGACAACTGCTGTTCATTTCACACGTTTGCTCACAAACTTTAG
TGTGTGGACCACACGTCATTTGGCATTGACTTCCAACCGAGCACCTTTGT
TTGCACTCCTTCGAATTACAATACATCATTTGACACCTTCCAATTACACA
GACTTGGTCGCAAACTGTCGTATTCACACACTGCATTAGATCGGTCTGTA
CTGCCAGTTGTCGAGTATAATCGACATTAGATAGTATCTTATTACAGCGA
CCATTGCATACTTGCAACGCTTTGGAAATTTGTCCGTCTACTTTTAGAGC
TGTCATGTTATCACAAATGCCGAGTGAACAAGATTGTTCAATGTTAGGTG
CACGTGCTATCAAGCTTTGGATATGAACTGTTACCAATGGTTTTCCATTG
TTGCTATTAGTTGGCGGGATGACAGACTGTCTGCAAACTTTGTGTGAGGA
GCAGGTGAGTTCAGAACATTGTTCAGTAGTACAAGCTTGTTTGCATACGG
GTTTGTTCAGACATTTACATCCTGTGGAACACTGCGATTGTTCACACCAT
TTGCGTGCTTCTTCATCACATCCTGTGTAGATGCAATTAATATGTTGCCA
AAGCAAAGccaagaaaatcaatttgttcaATAACTTCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018586-exon-sc0000301-1491911889:65522..67851 | TCONS_00018586-exon-sc0000301-1491911889:65522..67851 | Clytia hemisphaerica | exon |
| TCONS_00018586-exon-sc0000301-1510915933:65522..67851 | TCONS_00018586-exon-sc0000301-1510915933:65522..67851 | Clytia hemisphaerica | exon |
| TCONS_00018586-exon-sc0000301-1575043694:65522..67851 | TCONS_00018586-exon-sc0000301-1575043694:65522..67851 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:65522..67851 . |
Blast
The following BLAST results are available for this feature:
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