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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018501 ID=TCONS_00018501|Name=TCONS_00018501|organism=Clytia hemisphaerica|type=transcript|length=2273bp
acaaaatgtaGCTGGTTGTAGCTGGTGGGTTGGAAGTGCAAATAACATCT
CTCATGGATTGGGTACAGGTACACAAAAAGAGGAAGAAAAGCGAAACAAA
AAGTTCGCCAAACAACAGCAGCTTCTTTACgacctcctcctcctcctcct
cctcatCGTCGACAAGAAAGGCGATGGTGACACCAAAAGTCTCTCGCTCA
TTAATCCTCATCTCAAGCACATCAAATCTTTTTGATCAACAAACGGCACA
ACACGATCATATAAAATGCAGACCAGATGGCGTGCACCACGAGAAAGAAA
TAGAACAGAGCTATCAATACCACACGCCACACACTTCTATCAACCCTCAA
GTCAACCAGCAAATTTTCATCGGTAACCTCAAACACGATATGGAGGACAT
CACTTTAGTAAGGAAGTTACAACAACTTTTCAAAGACAGCGTGGACCTAG
AAATACCAGAATTTCGGTTCACTATATTTCAGCGCGATTCGAAGAAACAC
CCACGCAAGTATGGCTATCTAAATTTGGCCACTTTGCGCGATGAAGAAAA
AGCTTATAAACTTGACGGGTTGACAAATTTAGATTTTGTTATCGAAGGAC
TTGCACTTAATGTTAACAAACGGCTTTCAACGCGGAACCGCGTCACGAAA
TGGAACAAATTAACGTTTAATGGGCGCAGACGTTTGGTCAATAGAAGTCG
TTCTGATACAGATGTCCAAGCTGAcgacaaatcaaatttaaaagctCAAA
GCTCTAAACGTGAGTTAATGTACGGGCAAAATTTGCCCAGTGAAGACCGC
GTGACGGAATACAAGAAAGGAGGTGGTAACTACTTGAGGTGTACTCTTAT
TCAACATGTTCGAAAATACGTGTGTGCTTTCCTCAACAGTGAAGGTGGAA
GGCTTATGATAGGTGTCGATGACACGTGCAAAGTGTTTGGTGTGAGTTGT
ACACGAAAACAAGAAGATTTGGCACGCTGCCAAATTGACAACACAATCAA
ACAGTTTCAACCGCACGTTGCACCTCACATGTACATGGTGGAATTCATCC
CTGTACGCTTGGTACCTCATGATAATGTGGAATTCGATTGCATTGATCCT
TTGCTCAAAGTGTTGAAAATATCCGTCGTCCGACAAAACATGATGGCCGC
CACACTTTACGTCaatgataaagaaaatattttcttacgaCGTGACGGCA
GTGTTGAAGGACCTTTGAAAATTCCACAAATCATCGAATGGTGTCGCACA
CAATTCTCGCAAAATAACATCCCTCACAACGATCAAGACACTCCCGCACT
TTTGAGCCATTCTAATAGTGTCAACTTCGAAAAGATATTAGATCAGTTAT
CAAAGAGACAGAATGAAGTAAGTTAGATCGAATTTATTCAAATGATCATC
AATGAAAAGTGATTTTCAAACGCTGCTTCCTGATCATTGTTAGAAGCACG
ACTATAAGGAGTACGAGTAATAAAATAAGTTTAATAAGTAGTAAGTCtat
cttttattttctttggtACTGCATCACGAGGTCCGTTAAGACAATAATAT
GAACAATAATAGCAATATGAATTCAACAGGTACTGGCACAAATGGAAGAA
AGCTTTCATTCAGCAAGTATGGAGCTTCAAGAGAAAATCAAACTCCTGCA
AGTGGTTATCAACACGAAAGAAAACCAAGTCACACAAATCACACAAAATC
TCTTCGACGCTCTTAAAAGACTGGAACAAGAAAGGAAAAGGCAAAAGCAT
CGCACTGATTACATGTGTACAATCTGCTAACGTAAATCTTAGgaatgaaa
gaagaaaacaatTCAAGCAATCTAAAAAATTTGCGATTTCAATTCCTATA
TCTTCCCTATAAATGAGTGCGCCATAAAGtagaattaaaaataaatatct
taAAGCAAtacaattattaaaaaatatcgTATATAATTTGCATGTAAATT
GCTAAATTTGGATAAGAGTAGCTTCTCAATAAtataaatttcaaacaaaa
ttggcagtttgaaaaattcgaAGTGTACGAACAAATTTGTCACACAAAAA
TTGAGCACTTTTAGTGGTAGCAATAATGGTATTCTAAATcaagaaaaagg
gaaaaaatctAGAGAATAATTTTCCTCATTTTACAAATGGTTTTGACCAG
CCCCTCATCCATCGATTGTTTTTGCGCGATGGAAGTAAATCTGAAGATAA
ATAAATGTGACAATCATTAGTAATTTGGGTGGAACTAAACTAATATGCGG
GGAAGAATGATTTAGgaattgga Run BLAST on NCBI transcript from alignment at sc0000301:156096..162190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018501 ID=TCONS_00018501|Name=TCONS_00018501|organism=Clytia hemisphaerica|type=transcript|length=6095bp|location=Sequence derived from alignment at sc0000301:156096..162190+ (Clytia hemisphaerica)
acaaaatgtaGCTGGTTGTAGCTGGTGGGTTGGAAGTGCAAATAACATCT
CGTAAGTATATTTcccatttttttcacttttctgttttcttttctaATAG
GACATGATTTCATGCGAAGAGCTATCTTTTTCACCTCGATGAGAATTCGG
TTTAGGGAAAACAGAAAATACCGTTCTCTATtatgaaaacaaaggaaaaa
acaAACTCGACTACGTTGCGGCTCGGTTATCATATTCAAGATTTTGTTGC
ACATTAAATTagtaaactaaaataaaaagtcgttACAAATTTCTTAATTA
GTTTGGTAATGATAATTTGATCTAGTGCTTTGGTTTGTTCTTGCATATTT
GTGAATTATGGGTCTGCAATGTTTCCACGGAACCAACCTGCTGTTCATTG
TTCCCGTGGCTCTGTTGTCATACATTTATCTTTTTTGTTGTACAAACATT
GGTTGCATGTCTCACTGAACTCCAGTGACATTGGGAAACAGGCTTGACAG
TTAGCTAATCCGTTGGAGCATTGGAGGAAGTAGTGTGGGTTGTATCGGCT
GTAGTAGTGGTACTCAAAGTTTCCGTCAGCTTTTCCTTTGCAGAGGGAAT
CTGGACATGGAACATGTGGTGGTGCTGTGTAGGCGACTGAAATTATAGGA
AAATAATTTATTGATTGAGCTTCCTCTTGTAACACTCTTGAGCATACTGA
AACGAAGGTTTTGTCATATTCCATAAGATCCAATTCTTGGATACACATGC
ACAAGAAGACCgactttcgaaaataaaaattaatatcGTCGTAGAATGAC
AAATTTTCTCAATCTTTGAAAGTGTTTGGTGGGGGTTTTGGTAtaatttt
ataaagaaaaaaactttacttACCAGCCAAGAGAGCGATGAAAATAAAAG
CATTCATACTCTTCAACTATTGTCTTGGTTTGCTTTTtgctttgtttgat
ttttcacaGCAATTTTAAGTTGCAATTTGTTTCCAGTTGAATTGAGTTGA
CCTTTTTATATGTTCGCTTTGATACAATTAAAATCGACTAACTGGTATAC
TGTTATGTAAGATGATGTTGTCTGATCGAATTAGCTTTTTACCTTGAAAC
AATTAGcatatactctcgggtacctaatagccggggggtttggaataagc
ggggggggggggggggaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTAGGAAgt
gccattcgcgaaagtttatgctcgcgaaatattcttgacaaaatagaaaa
tctgtaaaatttcaaactttgaataaaatgtaacttttattaCACTTTTT
AGCtcgctaaaagactaataagtcaaaggacaaatgtttcaggcaatcca
agaagtatttgttcctctaagccattttttcatgtgaaaattctcagttt
tacgtcttgattcgcgaaagtttgtgctcacgaaaaatatttctccgtta
aattcgcgaaagtaaatgttgtgaatttcgcgatttttcgtcctcgtgaa
agtttctgctcgcgaaagtttgtacgcctaaagtattatGTAACAAGCCC
GGGAGGGACTTACGGTacatttaaatatctttttgttCATAAGGGAAGAC
GAATTTAGTTTCTTGTTCTACGGGAAAACCTTCAGAAAATTCTGGGTCGG
TCGGCCGgtaagatgttcttaacatgttcttattttccccatttttggga
tatttttgcccattttcctaaggaatcgggtgttttagagtccccaaagc
cttaaaatgttcttaacttgttttaacattttggctatcgaagccttgtt
tgttcttataaaaaacgtgtatagagCATGATTACAGATCAGATTTATTT
TCCAAGATGTTGCCCGAAAAACTtcgttttccttattttttttcacGCTT
ACCTTACACGAGTGCCCCATCCCCCCCCATGGTAACGAGTTAATCAAACT
TAGATAGTATTTTTTACGAATTGTTTAGTTCTAGGGAAAACATTTTATTC
GTGAACTTTTGTGGCTAACAATTTCCGATTTTCGAAGCAATGGTTTTCGA
GAGACAAAGGGTATTTATTAATTGAATCAGATCATGAAGCTTCTCGTGGT
TGTTGTATAAGTAGATTTATGATGAAAACGCATTATGTAAGCAACACTTC
ATCTGGTTAATCCAATTTGCGTCACTTCGGGGATGAGTTCCTtgacatca
aatttttcaagaaGTTCCAAACTTTGGTTTCTGCCAGGCACCAGCGGAGG
TGAATGAGGCAAAAACAGCTTAGCAACGACGTCATTTCAGcatgattttc
aaatcaaatgaatggGGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAA
GCCTGTCGGATTTTGAAAGGTGCAAGTGTCGGATGACTTGTCTCGATGAA
TGTAAAGTTTGAGATTGATTCCTTTTGGATGTTGGTACATGAATCATATT
CAAATTCACCAATCAAAACCCCACAGTGATAGCATAAGCACGAAGAAAGA
TATATCAGCTTCTTTGGTTGTTATGCAAGCCATGTcgggaaaaaaacttt
tgacgCCATGttgaaaatcaccaaaattcaaatttttggcgGCAACGCGC
TCTCTGCAAAAAGGAAAAAGCCGcgctttgtttttgaaacaatgaGTTCT
CCGTCCAGTCGTTAGAAGTTCATGctgttttcaagattttgagagaaaga
agcttttacaaaaatattccgaaaatttattaatttttgtttggcAAAAG
ATACACCAATTagtgcgaaaaatttttcaaaatgttttttcttcgccgaa
actaagatCCTCAAAGTTTAAACACTtgtcttcgcaaaagtcttcttctt
catcaaatttttttccatGTGATTTTTACCTTTTACCTTTTATGTTTTTT
CGTAGTTTCCTTAGATAAAAAGTGAACCTGTGGTGAAGAGATAGGAAGGA
TGAATCCTATCCCGGGATAGTTACCTATTCTAAGATAGTTTTAAAACCGT
TGGCCTTTTTCTAGCGGCACAACAGAGCCATAACGCAATAATCTACCCTG
GGACAAACAAAACCGTTtaaggagatatttgagttaTAGAAGTTTCGGTT
ATGTACACTGTAGTTCTAAATGATCACACATCGTATCAAATCTGATTGTT
CTGTTTTCTAGTCATGGATTGGGTACAGGTACACAAAAAGAGGAAGAAAA
GCGAAACAAAAAGTTCGCCAAACAACAGCAGCTTCTTTACgacctcctcc
tcctcctcctcctcatCGTCGACAAGAAAGGCGATGGTGACACCAAAAGT
CTCTCGCTCATTAATCCTCATCTCAAGCACATCAAATCTTTTTGATCAAC
AAACGGCACAACACGATCATATAAAATGCAGACCAGATGGCGTGCACCAC
GAGAAAGAAATAGAACAGAGCTATCAATACCACACGCCACACACTTCTAT
CAACCCTCAAGTCAACCAGCAAATTTTCATCGGTAACCTCAAACACGATA
TGGAGGACATCACTTTAGTAAGGAAGTTACAACAACTTTTCAAAGACAGC
GTGGACCTAGAAATACCAGAATTTCGGTTCACTATATTTCAGCGCGATTC
GAAGAAACACCCACGCAAGTATGGCTATCTAAATTTGGCCACTTTGCGCG
ATGAAGAAAAAGCTTATAAACTTGACGGGTTGACAAATTTAGATTTTGTT
ATCGAAGGACTTGCACTTAATGTTAACAAACGGCTTTCAACGCGGAACCG
CGTCACGAAATGGAACAAATTAACGTTTAATGGGCGCAGACGTTTGGTCA
ATAGAAGTCGTTCTGATACAGATGTCCAAGCTGAcgacaaatcaaattta
aaagctCAAAGCTCTAAACGTGAGTTAATGTACGGGCAAAATTTGCCCAG
TGAAGACCGCGTGACGGAATACAAGAAAGGAGGTGGTAACTACTTGAGGT
GTACTCTTATTCAACATGTTCGAAAATACGTGTGTGCTTTCCTCAACAGT
GAAGGTAAGCAATTCAtttattatttgtttgtttgacaAGCTTTTGATGT
GAAACCCTCTAATGTTTTATTTATCATGACAATCAATTAAAAAGACAAGA
CCCTCTTCTTTTATAGGTGGAAGGCTTATGATAGGTGTCGATGACACGTG
CAAAGTGTTTGGTGTGAGTTGTACACGAAAACAAGAAGATTTGGCACGCT
GCCAAATTGACAACACAATCAAACAGTTTCAACCGCACGTTGCACCTCAC
ATGTACATGGTGGAATTCATCCCTGTACGCTTGGTACCTCATGATAATGT
GGAATTCGATTGCATTGATCCTTTGCTCAAAGTGTTGAAAATATCCGTCG
TCCGACAAAACATGATGGCCGCCACACTTTACGTCaatgataaagaaaat
attttcttacgaCGTGACGGCAGTGTTGAAGGACCTTTGAAAATTCCACA
AATCATCGAATGGTGTCGCACACAATTCTCGCAAAATAACATCCCTCACA
ACGATCAAGACACTCCCGCACTTTTGAGCCATTCTAATAGTGTCAACTTC
GAAAAGATATTAGATCAGTTATCAAAGAGACAGAATGAAGTAAGTTAGAT
CGAATTTATTCAAATGATCATCAATGAAAAGTGATTTTCAAACGCTGCTT
CCTGATCATTGTTAGAAGCACGACTATAAGGAGTACGAGTAATAAAATAA
GTTTAATAAGTAGTAAGTCtatcttttattttctttggtACTGCATCACG
AGGTCCGTTAAGACAATAATATGAACAATAATAGCAATATGAATTCAACA
GGTACTGGCACAAATGGAAGAAAGCTTTCATTCAGCAAGTATGGAGCTTC
AAGAGAAAATCAAACTCCTGCAAGTGGTTATCAACACGAAAGAAAACCAA
GTCACACAAATCACACAAAATCTCTTCGACGCTCTTAAAAGACTGGAACA
AGAAAGGAAAAGGCAAAAGCATCGCACTGATTACATGTGTACAATCTGCT
AACGTAAATCTTAGgaatgaaagaagaaaacaatTCAAGCAATCTAAAAA
ATTTGCGATTTCAATTCCTATATCTTCCCTATAAATGAGTGCGCCATAAA
GtagaattaaaaataaatatcttaAAGCAAtacaattattaaaaaatatc
gTATATAATTTGCATGTAAATTGCTAAATTTGGATAAGAGTAGCTTCTCA
ATAAtataaatttcaaacaaaattggcagtttgaaaaattcgaAGTGTAC
GAACAAATTTGTCACACAAAAATTGAGCACTTTTAGTGGTAGCAATAATG
GTATTCTAAATcaagaaaaagggaaaaaatctAGAGAATAATTTTCCTCA
TTTTACAAATGGTTTTGACCAGCCCCTCATCCATCGATTGTTTTTGCGCG
ATGGAAGTAAATCTGAAGATAAATAAATGTGACAATCATTAGTAATTTGG
GTGGAACTAAACTAATATGCGGGGAAGAATGATTTAGgaattgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018501-exon-sc0000301-1491911889:156096..156146 | TCONS_00018501-exon-sc0000301-1491911889:156096..156146 | Clytia hemisphaerica | exon |
| TCONS_00018501-exon-sc0000301-1510915933:156096..156146 | TCONS_00018501-exon-sc0000301-1510915933:156096..156146 | Clytia hemisphaerica | exon |
| TCONS_00018501-exon-sc0000301-1575043694:156096..156146 | TCONS_00018501-exon-sc0000301-1575043694:156096..156146 | Clytia hemisphaerica | exon |
| TCONS_00018501-exon-sc0000301-1491911889:159857..160699 | TCONS_00018501-exon-sc0000301-1491911889:159857..160699 | Clytia hemisphaerica | exon |
| TCONS_00018501-exon-sc0000301-1510915933:159857..160699 | TCONS_00018501-exon-sc0000301-1510915933:159857..160699 | Clytia hemisphaerica | exon |
| TCONS_00018501-exon-sc0000301-1575043694:159857..160699 | TCONS_00018501-exon-sc0000301-1575043694:159857..160699 | Clytia hemisphaerica | exon |
| TCONS_00018501-exon-sc0000301-1491911889:160812..162190 | TCONS_00018501-exon-sc0000301-1491911889:160812..162190 | Clytia hemisphaerica | exon |
| TCONS_00018501-exon-sc0000301-1510915933:160812..162190 | TCONS_00018501-exon-sc0000301-1510915933:160812..162190 | Clytia hemisphaerica | exon |
| TCONS_00018501-exon-sc0000301-1575043694:160812..162190 | TCONS_00018501-exon-sc0000301-1575043694:160812..162190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:156096..162190 + |
Blast
BLAST of TCONS_00018501 vs. Swiss-Prot (Human)
Match: SLNL1 (Schlafen-like protein 1 OS=Homo sapiens GN=SLFNL1 PE=2 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 1.399e-35 Identity = 70/169 (41.42%), Postives = 100/169 (59.17%), Query Frame = 3
Query: 753 SKRELMYGQNLPSEDRVTEYKKGGGNYLRCTLIQHVRKYVCAFLNSEGGRLMIGVDDTCKVFGVSCTRKQEDLARCQIDNTIKQFQPHVAPHMYMVEFIPVRLVPHDNVEFDCIDPLLKVLKISV-VRQNMMAATLYVNDKENIFLRRDGSVEGPLKIPQIIEWCRTQF 1256
K +L G L SE R E+K+G G YL HVR+YVCAFLNSEGG L++GV+D+ V G+ C+ + ED AR +D+ ++ F+P + P Y + FIPV +V LKV++++V + LY D+ +FLRRDGS++GPL I EWCR ++
Sbjct: 208 GKDQLFQGAFLGSETRNMEFKRGSGEYLSLAFKHHVRRYVCAFLNSEGGSLLVGVEDSGLVQGIRCSHRDEDRARLLVDSILQGFKPQIFPDAYTLTFIPVISTSETSVP-------LKVIRLTVHTPKAQSQPQLYQTDQGEVFLRRDGSIQGPLSASAIQEWCRQRW 369
The following BLAST results are available for this feature:
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