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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018372 ID=TCONS_00018372|Name=TCONS_00018372|organism=Clytia hemisphaerica|type=transcript|length=967bp
CTTAGACTTATTCATCAATATTTTCAACTTCTCAACGTTTTGAGCTTcgc
aaaattgtttttatatgaagTCAAGATGATGAGATAGCTTATGGAAACCT
CAAAATGATCAATAGGCATTCGAAAAACCGTGTGACATTCTGTTTATTCA
TTATACTGATTGTCTTGGCCAAATTATGCAACACAGAAAACTTATCTCCG
CAACAAAACAAACATCCGCGACGTCATGTCCGAATTGTGATACGGAACTC
GCCAATCACTCGCTCAACGGATAACATACTTATGCGGTACGCCCGTGAAA
GGGACCGGACGTTGGTCAGGGTGATTCGCACGAAGCGCCGCAAGCGAAAC
AAGGACGTTTTACACATCGCTCCCACACACATGAGAACTGTCCGGCTAAA
AAGCAAAACAGGATTCTTTTTGGAGATACAACCGTCCGGAAAAGTCACCG
GACATGTAAATAAAACCAAATATACCAAGATGGAGCTACAAGTGATCACA
CCGCACGTCAAACGTATCAAAAGTGTGGCTACTGGTCGCTATTTGGCCAT
CAATAGAAAAGGAAAAGTCATTTCAAAGGGTGTGTCGGATAACGAGACCT
ACTTCTTTGAAGAACTTTCTGAAAATTACGATTATCTCTATTGTTCCATA
AAATATCCGAAAACAGATTCTGGATTATCCTGGTATGTAGGCTTGAAACG
AAGCCGCTCAAGAAAGACTTTACAAGGGCGCGCCAAAAGAGCTTCCAGAA
CTCTACCCGGTGATTCAGCcactcatttttcaattttctttgagCATTAG
TGTAATTTAGATAATTTACTCCCAAATTTTTTTGGGgataaaaaaagata
atttgtttttgttgtgtTATTTTTGGAGGCAACTTTTAAGCGAGTACAAT
GCAAAATTTTGTGACTTTACTGAGGCGGATTTGAAGGGAAAACAAACTAA
TCTTCTCGTCATTTTTT Run BLAST on NCBI transcript from alignment at sc0000297:142604..146148+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018372 ID=TCONS_00018372|Name=TCONS_00018372|organism=Clytia hemisphaerica|type=transcript|length=3545bp|location=Sequence derived from alignment at sc0000297:142604..146148+ (Clytia hemisphaerica)
CTTAGACTTATTCATCAATATTTTCAACTTCTCAACGTTTTGAGCTTcgc
aaaattgtttttatatgaagTCAAGATGATGAGATAGCTTATGGAAACCT
CAAAATGATCAATAGGGTAAGGAAGACTTTACACCTCTCCTTTTCGATGA
TCGAAATTTTGTGTTTGGGTGTATTTCTACtcgataaaagtttaaaaagt
tggcattatttttgaaaatatatgtCCTTTGgtcttgttttaaaattttc
gttCCTGTTAATAATTTTTGGTGAGAACACTATCTAGCGAATAAGAGGTT
ATCTGCATTTGTAAATCTATAAAGGGCTGCTTATTCAGCCNCTGTTAATA
ATTTTTGGTGAGAACACTACCTAGCGAATAAGAGGTTATCTGCATTTGTA
AATCTATAAGGGGCTGCTTATTCAGCCATTGGTAAGAtttgattatattt
tattgATTCTTGAGTCTTGAAGTAAGAAATTGAAAACAGTTTTGGAGGAT
ATCAATCATGATGGATTCTTGTATTTGATTCCTGACAAACGATCTGAAGT
GTTTTAAAAGCTAGACTTTTTATCATCAGAGCGGAATAAAGGTCGAATTT
CGAAACTAATACtgcagtggagtctctttaactcgaacctccataactcg
aacaagttttatcatgttcccttcagttaacaatgccttataaaccttac
tctataattcggaatttccttaactcaaacaagttgTGCGTGCTCGAATT
ATGGAGACTTCACTTTACAAACGGTCGACCCTTATACTATACATGGTTAA
TCCATGAAAGAAAAGACAAGAAATCAAATACTTCTGATCATTCACTACTT
TAGGCGCTTATGGTTTTCTCTCCCCTCGATATCAGATGAAACAGCTCCAT
CCACTTGAGAATAATCTTAAAAATCTACTTTGTTGATCAACGTGTCtgtc
aaaaaaagtttcttctcAAGCAAAAAGAGCTTTTAGAAAGATCTCATGTA
GACAGTTATAAAGTTGATGTGATACATGGAAATTGCCTTGCGTCGTTTTC
GTTTCGATTGCCAATGGAGTGCATGTGTTTGAGTTGCCTTGTTCAGAAAA
TGAAATCGTGGTTTGACGCCGTAAAGGTATGGCCAGGATGTTGTTGTGTT
AGTGCTCTAAAGAAATAAAACGAATACGGTCAATTTTCAAAGCTGCAAAA
TTCTGCTGAAACAACTTCATAAaatgaacgaatgaatgaatgaatgaata
aatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaa
tgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatg
caTAAATGATTTACTACGTAAGGCCACAATAAATACTGCACTTCCGTGTT
TATCAACAGGAAAtgtcaaattcatttttttgataaacgaggtgttaaaa
gttatctttttaCCTCCAAGAATAGCATGATCGTTCAATTTGATAAATTA
CATGTCAGGGTATGTGCCTGTGAGAGGTTCTATAAATCAAGTGAATGTTG
ACGTTGTGTATTTGTTGACATGTATAGATGGAACGATAATACCAAATATA
CCAGTATTTTATGCTTAGTACTCTATCCACATTTGATACAGATAAAGCCC
TTACTACATTGCATCACAATCTCTATACTATCACTAAACAAcgatttcta
ttgtttttattttacagCATTCGAAAAACCGTGTGACATTCTGTTTATTC
ATTATACTGATTGTCTTGGCCAAATTATGCAACACAGAAAACTTATCTCC
GCAACAAAACAAACATCCGCGACGTCATGTCCGAATTGTGATACGGAACT
CGCCAATCACTCGCTCAACGGATAACATACTTATGCGGTACGCCCGTGAA
AGGGACCGGACGTTGGTCAGGGTGATTCGCACGAAGCGCCGCAAGCGAAA
CAAGGACGTTTTACACATCGCTCCCACACACATGAGAACTGTCCGGCTAA
AAAGCAAAACAGGATTCTTTTTGGAGATACAACCGTCCGGAAAAGTCACC
GGACATGTAAATAAAACCAAATATAGTAAGTGAATctttgaactttttat
tttacttactATCTCTGGAAAGGCAACAAAATATGCTGAAATCTTAACTT
TACGGCTGACTTTATAAGTTTTAACTTTAATAAATTCCAGCACTCCGTAA
ATTCTAATTTTCcattaatttttttagtttaaaaacaAATTGGTAATCTT
AGTTTTTTTATGCTACGGTATGGTTCGCGGTCAGCCGAAAAGACCTAGTG
ATCCCAAATGATGCCAGTGGCACTTAATGGGTTAAACGACAAATGGAACG
AATTCGAAACCCAAGAAAATCCTCTTTAAATCTGGGATTTTACTCCCTCG
CTTTAAttgttaaattaaattaaattaaatgtaCCATCGGGTCAGGTGTA
ATTGACTGTAAAAAAGAGAATCCTCGGATGGGACAATGCGGGCCGGATGT
CCACTTGAAACAGACCTGTAGGATTAAAAAAGTCACTTCCTTGTTTACAG
CCAAGATGGAGCTACAAGTGATCACACCGCACGTCAANAAAAAAGTTACT
TCCTTGTTTACAGCCAAGATGGAGCTACAAGTGATCACACCGCACGTCAA
ACGTATCAAAAGTGTGGCTACTGGTCGCTATTTGGCCATCAATAGAAAAG
GAAAAGTCATTTCAAAGGTAAGAAGGTTTCAATTTTATGTAATCCAACAT
TCCACTATTTTATAGAGTCGTGAAATTTTATAgtcaactttctttttttt
gtaattcgaacttatattggtcccctcagctggaaattgttttaaattac
tctctgtattTTGAAtctttccttaactcgaataaaATCTGGTCCCCTtg
aacatcgaattagagagagtgtaTAACGTTATGATGGCCCATCTATGACT
TTAACAATTCCGAGATTAATTCAACATTTTTGCACACCCCTGCATCTTCC
AAGGCTAATTGACTGATACTCATATTTTCCATACTAAACCACTAACCCCG
CCACTAACTATTGTTGTTGTTCCTTTTAAATTCGCCTCAGAAATCTATCT
ATAGTATACGAAACAATTTGTTctaaaagaactttttttcgtttctttCG
CTTTAGGGTGTGTCGGATAACGAGACCTACTTCTTTGAAGAACTTTCTGA
AAATTACGATTATCTCTATTGTTCCATAAAATATCCGAAAACAGATTCTG
GATTATCCTGGTATGTAGGCTTGAAACGAAGCCGCTCAAGAAAGACTTTA
CAAGGGCGCGCCAAAAGAGCTTCCAGAACTCTACCCGGTGATTCAGCcac
tcatttttcaattttctttgagCATTAGTGTAATTTAGATAATTTACTCC
CAAATTTTTTTGGGgataaaaaaagataatttgtttttgttgtgtTATTT
TTGGAGGCAACTTTTAAGCGAGTACAATGCAAAATTTTGTGACTTTACTG
AGGCGGATTTGAAGGGAAAACAAACTAATCTTCTCGTCATTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018372-exon-sc0000297-1491911889:142604..142719 | TCONS_00018372-exon-sc0000297-1491911889:142604..142719 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1510915933:142604..142719 | TCONS_00018372-exon-sc0000297-1510915933:142604..142719 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1575043694:142604..142719 | TCONS_00018372-exon-sc0000297-1575043694:142604..142719 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1491911889:144321..144678 | TCONS_00018372-exon-sc0000297-1491911889:144321..144678 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1510915933:144321..144678 | TCONS_00018372-exon-sc0000297-1510915933:144321..144678 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1575043694:144321..144678 | TCONS_00018372-exon-sc0000297-1575043694:144321..144678 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1491911889:145217..145320 | TCONS_00018372-exon-sc0000297-1491911889:145217..145320 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1510915933:145217..145320 | TCONS_00018372-exon-sc0000297-1510915933:145217..145320 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1575043694:145217..145320 | TCONS_00018372-exon-sc0000297-1575043694:145217..145320 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1491911889:145760..146148 | TCONS_00018372-exon-sc0000297-1491911889:145760..146148 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1510915933:145760..146148 | TCONS_00018372-exon-sc0000297-1510915933:145760..146148 | Clytia hemisphaerica | exon |
| TCONS_00018372-exon-sc0000297-1575043694:145760..146148 | TCONS_00018372-exon-sc0000297-1575043694:145760..146148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:142604..146148 + |
Blast
The following BLAST results are available for this feature:
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