|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018348 ID=TCONS_00018348|Name=TCONS_00018348|organism=Clytia hemisphaerica|type=transcript|length=7163bpRun BLAST on NCBI protein sequence of TCONS_00018348-protein >TCONS_00018348-protein ID=TCONS_00018348-protein|Name=TCONS_00018348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1164bp MESKMDTKLIQDLTTNKKFLLNFVKEWNESRLDMFALSQPNEKMQFSGVMRun BLAST on NCBI transcript from alignment at sc0000297:60986..82402+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018348 ID=TCONS_00018348|Name=TCONS_00018348|organism=Clytia hemisphaerica|type=transcript|length=21417bp|location=Sequence derived from alignment at sc0000297:60986..82402+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000297:60986..82402+ >TCONS_00018348 ID=TCONS_00018348|Name=TCONS_00018348|organism=Clytia hemisphaerica|type=CDS|length=48930bp|location=Sequence derived from alignment at sc0000297:60986..82402+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018348 vs. Swiss-Prot (Human)
Match: AFAD (Afadin OS=Homo sapiens GN=AFDN PE=1 SV=3) HSP 1 Score: 450.284 bits (1157), Expect = 1.082e-128 Identity = 296/816 (36.27%), Postives = 440/816 (53.92%), Query Frame = 3
Query: 186 KKFLLNFVKEWNESRLDMFALSQPNEKMQFSGVMRFFFQD-SGQKATTKCIRVTSDQSVADIMPTLIDKFCPDLKMLSMPNYELYEIHGTGDVRKLNPKQRPLLVQLHWHNDDREGRFVLKNAEVKIQPVKFF----EINQDEG--QXXXXXXXXXXXXXXXXXXXXXXXQNKKNQDK----------LLADKVYRELPESSLTRTISNPEAVMRRRRQQKLEKRMKEFQNKGG-PQTGGILKIFAESLKPEIPYKTILASVKDNADVITKAALEKFLLPDENPIYFCIVMAIIAPG-EANNPGNVKERIIRSSDCPLAIQNSWPRSKGVITFHLRRK--DDAPENT-----SKIPKDDKKAKGRNXXXXXXXXXXXXXXXXXXXXXXXLEQKLDYDIMPYFLELTP---------------EGKEISYKPKLYYIRAHETVIGSSRNPSPGVQYLQLFSPKILASHCSIVNEDGCVSIIPHGPDADVRVSGKRIFDTTILSNGNVVQFGGLHTFRFCNPLDPAHSEKSSIASEHGIPPYRXXXXXXXXXXXXXXXXXELKEKILNEQIXXXXXXXXXXXXXETTFGVDGGIE------TEKIPRHIYSARSAENLLDEETVVLRQNFRNSFKKHRQSAPXXXXXXXXXXXXXPATLTFLENGKDAFFATVISEVNGAAVNFKLAPTYTLYLVARHVYSPAYRPGLNPVDRSKVITSTTKRIATSVQQTIQENDCLAGGLAFWMANASELLHFYRQDMDLGPLTXXXXXXXXXXXXESFALLVNAMEDELALALPAFLDPSEEVDIHEHDIDAILN 2492
++ L + + WN +RLD+F +SQP E ++F GVMRF+FQD + TKCIRV+S + D++ TL +KF PD++MLS P Y LYE+H +G+ R+L+ ++PL+VQL+W+ DDREGRFVLKN I P K E + EG Q +R +++K KKKR++E RQ D+ LA +VY+++PE+S TRTISNPE VM+RRRQQKLEKRM+EF++ G P +GG L+I+A+SLKP IPYKTIL S D AD ALEK+ L ENP +CI ++ PG + ++ KE I+ +CPL I WP KG++ F L+R+ D P+ T K PK ++A G S+ L + +PY +EL+P +G + KPKLY ++ T +G+ + +Q LF P I HC + N DG V++ P DA+ V G+RI +TT+L +G VQFG H F+F +DP+ +H L ++ ++ + V ETTF + G I T K + S R + E +++ R + + + E +LPA++ F E+ +D+F + +I+ N + V+FKL+PTY LY+ R+V S YRP ++P +R+ + + ++ + ++ IQ+ +AG LAFWMANASELL+F +QD DL +T AQ +LA +Q +F LV+ ++ EL +PAFLD EE + ID +L+
Sbjct: 10 RRKLADIIHHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGE-RRLDIDEKPLVVQLNWNKDDREGRFVLKNENDAIPPKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKKREKEALRQASDKDDRPFQGEDVENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGLEKENPKDYCIARVMLPPGAQHSDEKGAKEIILDDDECPLQIFREWPSDKGILVFQLKRRPPDHIPKKTKKHLEGKTPKGKERADGSGYGST-----------------------LPPEKLPYLVELSPGRRNHFAYYNYHTYEDGSDSRDKPKLYRLQLSVTEVGTEKLDDNSIQ---LFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVEGQRISETTMLQSGMKVQFGASHVFKF---VDPSQ--------DHA-----------------------LAKRSVDGGLMVKGPRHKPGIVQETTFDLGGDIHSGTALPTSKSTTRLDSDRVSSASSTAERGMVKPMIRVEQQPDYRRQESRTQDASGPELILPASIEFRESSEDSFLSAIINYTNSSTVHFKLSPTYVLYMACRYVLSNQYRPDISPTERTHKVIAVVNKMVSMMEGVIQKQKNIAGALAFWMANASELLNFIKQDRDLSRITLDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENSLQRPKIDDVLH 764 HSP 2 Score: 372.089 bits (954), Expect = 6.583e-104 Identity = 186/316 (58.86%), Postives = 231/316 (73.10%), Query Frame = 3
Query: 2643 PEMADVLYILSSAMSLLRRCRVNAALTIQLFSQLFHYINMWIFNRIVLEPDLRLCSRSWGHKLRLRLSFVEAWAERQGLELAADCHLARIVQAAYLLESSKDSHDDIVDISQQCFKLNSLQLRCLLQNYQQESGESRIPQDLVETIVAVAESTADELTISDGREVKLEEDVQLQLPFLLPEEGYSSDIIRGVPPGLQEFLEPLCDTGLCELSLNPSSMGLWTVYQEPYDIDEN---DDPNRDSQLVEELPIQRVTIDKGKSGLGLSICAAKGVHSDFPGIYIKAVIKGGLADQDGRLEGGDQILSVNESSLIDVTQ 3581
P++ DVL+ L+ AMSLLRRCRVNAALTIQLFSQLFH+INMW+FNR+V +PD LCS WG +R +L +EAWAE+QGLELAADCHL+RIVQA LL K + DDI +I+ CFKLNSLQL+ LLQNY E IP DL+E +V VAE+TADEL SDGREV+LEED LQLPFLLPE+GYS D++R +P GLQEFL+PLC G C L + S G WT+Y E D + + ++ L +E I VT+ K ++G+GLSI AAKG D GIY+K+V+KGG AD DGRL GDQ+LSV+ SL+ ++Q
Sbjct: 757 PKIDDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYAPDDIPNINSTCFKLNSLQLQALLQNYHCAPDEPFIPTDLIENVVTVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGLQEFLDPLCQRGFCRLIPHTRSPGTWTIYFEGADYESHLLRENTELAQPLRKEPEIITVTLKK-QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ 1071 The following BLAST results are available for this feature:
BLAST of TCONS_00018348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.