TCONS_00018320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018320
Unique NameTCONS_00018320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018320 ID=TCONS_00018320|Name=TCONS_00018320|organism=Clytia hemisphaerica|type=transcript|length=243bp
taaccTCTGTTGTGTTCGCATTTTGATCATAATCATTGGCTCTGCTTCCC
ATTTCTGCACCACGTGACAACAGAGCTTTCACCATTTCCACATGGTTGCC
CTGTACTGCAAAATGTAACGGATAAAAGTTCGAAAAGTTCGGAATGTTGA
CATTGACAAATCGTTCGAGAAGAAAGGAAGCCATCTTCCAATTGTTCTTC
ATAAGGGCGATTAACAGTGGCGTGTTTCCAGAACGTCCCTCct
Run BLAST on NCBI

transcript from alignment at sc0000295:216849..217091

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018320 ID=TCONS_00018320|Name=TCONS_00018320|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at sc0000295:216849..217091 (Clytia hemisphaerica)
agGAGGGACGTTCTGGAAACACGCCACTGTTAATCGCCCTTATGAAGAAC
AATTGGAAGATGGCTTCCTTTCTTCTCGAACGATTTGTCAATGTCAACAT
TCCGAACTTTTCGAACTTTTATCCGTTACATTTTGCAGTACAGGGCAACC
ATGTGGAAATGGTGAAAGCTCTGTTGTCACGTGGTGCAGAAATGGGAAGC
AGAGCCAATGATTATGATCAAAATGCGAACACAACAGAggtta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010286XLOC_010286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018320-exon-sc0000295-1491911889:216849..217091TCONS_00018320-exon-sc0000295-1491911889:216849..217091Clytia hemisphaericaexon
TCONS_00018320-exon-sc0000295-1510915933:216849..217091TCONS_00018320-exon-sc0000295-1510915933:216849..217091Clytia hemisphaericaexon
TCONS_00018320-exon-sc0000295-1575043694:216849..217091TCONS_00018320-exon-sc0000295-1575043694:216849..217091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:216849..217091 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.76644	4.77398	0	1.6623	12.7145	6.67486	14.8098	10.3164	9.59365	8.34617	0	3.19357	4.68453	10.8465	4.06016	8.1433	4.87456	2.94802	10.7129	2.67178	0.804514	0	8.88054	13.6465	5.79308	6.25686	5.89479	0	4.63512	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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