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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018247 ID=TCONS_00018247|Name=TCONS_00018247|organism=Clytia hemisphaerica|type=transcript|length=5778bpRun BLAST on NCBI protein sequence of TCONS_00018247-protein >TCONS_00018247-protein ID=TCONS_00018247-protein|Name=TCONS_00018247-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1180bp MSSSSSGSLNNIEPQFDNNQTTTENRQNVSSNPIPTTTKTNIFEGLYPYNRun BLAST on NCBI transcript from alignment at sc0000295:12981..27577+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018247 ID=TCONS_00018247|Name=TCONS_00018247|organism=Clytia hemisphaerica|type=transcript|length=14597bp|location=Sequence derived from alignment at sc0000295:12981..27577+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000295:12981..27577+ >TCONS_00018247 ID=TCONS_00018247|Name=TCONS_00018247|organism=Clytia hemisphaerica|type=CDS|length=60231bp|location=Sequence derived from alignment at sc0000295:12981..27577+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018247 vs. Swiss-Prot (Human)
Match: ZN112 (Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=1 SV=2) HSP 1 Score: 321.627 bits (823), Expect = 2.316e-91 Identity = 167/366 (45.63%), Postives = 220/366 (60.11%), Query Frame = 2
Query: 1904 FICTICNKHFNSASALRLHQLTHVNVKNFYCKADGCGKSFPNASALRIHSRVHQEEKPYKCTHEDCGKTFKTPSELTRHEFRHTGEKPFKCDKCDKSFIRNDDLRRHSFTHTGQKKFKCDMCDFSCIQSFDLVKHKYIHGGEKPYKCKMCPKQFTRPARLREHERLHTGEKPYTCEICGKSFSTLSSLKSHKQTHENNARGKPFFCMDCNISFPTTEEHQHHKLMHDQMK-LTCPICNKVFVSTKTLKRHAIVHSGEKPYECRVCKKRFARAGDLKAHSPVHHEERPFKCEHCAKSFSRFSSLKEHIRLHSGIYPYKCNICDKIFNHQSHLKVHLQTHTGEKPHKCFLCPKEFSRKISLKHHLRTH 2998
+ C IC K FN S L +HQ H K + C+ C K F +S L+ H RVH EKPYKC E+CGK F S L H+ HTGEKP+KC++C K F R+ L+ H HTG+K FKC+ C SF+L H+ +H GEKPYKC+ C K F++ + L H+R+HTGEKPY C+ CGKSFS S L+SH+ H +P+ C C F Q H+ +H ++K C +C K F + L+ H VH+G KPY+C VC K F+ + L+AH VH E RP+KCE C K FS +SSL+ H R+H+G PYKC +C K F+ +S+L+ H + HTGEKP+KC C K F L H R H
Sbjct: 525 YKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEE--CDKGFSRSSYLQAHQRVHTGEKPYKC--EECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGE---RPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVH 883 HSP 2 Score: 258.84 bits (660), Expect = 1.193e-70 Identity = 150/383 (39.16%), Postives = 207/383 (54.05%), Query Frame = 2
Query: 1706 KKFVCEICGKEYVRAGSYYTHLREHGAQTKKHKCMICVQSFDTVEEIKQHLLTHKRETKESKTYDEFICTICNKHFNSASALRLHQLTHVNVKNFYCKADGCGKSFPNASALRIHSRVHQEEKPYKCTHEDCGKTFKTPSELTRHEFRHTGEKPFKCDKCDKSFIRNDDLRRHSFTHTGQKKFKCDMCDFSCIQSFDLVKHKYIHGGEKPYKCKMCPKQFTRPARLREHERLHTGEKPYTCEICGKSFSTLSSLKSHKQTHENNARGKPFFCMDCNISFPTTEEHQHHKLMHDQMK-LTCPICNKVFVSTKTLKRHAIVHSGEKPYECRVCKKRFARAGDLKAHSPVHHEERPFKCEHCAKSFSRFSSLKEHIRLHSGIYPYK 2851
K + C ICGK + H R H + K +KC C + F ++ H H E + C C K F+ S L+ HQ H K + C+ CGK F +S L+ H RVH EKP+KC E+CGK F L H+ HTGEKP+KC++C K F + L H HTG+K ++CD C S Q L H+ +H GE+PY C++C K F++ A L+ H+R+HT KPY CE+CGK FS S L++H++ H GKP+ C C F + Q H+ +H + + C C K F +L+ H VH+GEKPY+C VC K F++ +L+AH VH E+P+KC+ C K F S L H R+HS YK
Sbjct: 523 KPYKCNICGKGFNHRSVLNVHQRVHTGE-KPYKCEECDKGFSRSSYLQAHQRVHTGEKP-------YKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEE--CGKGFSRSSHLQGHQRVHTGEKPFKC--EECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTG---GKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDKFYK 890 HSP 3 Score: 253.832 bits (647), Expect = 4.630e-69 Identity = 153/407 (37.59%), Postives = 210/407 (51.60%), Query Frame = 2
Query: 1931 FNSASALRLHQLTHVN---------VKNFYC-----------------KADGCGKSFPNASALRIHSRVHQEEKPYK---CTH---------------------EDCGKTFKTPSELTRHEFRHTGEKPFKCDKCDKSFIRNDDLRRHSFTHTGQKKFKCDMCDFSCIQSFDLVKHKYIHGGEKPYKCKMCPKQFTRPARLREHERLHTGEKPYTCEICGKSFSTLSSLKSHKQTHENNARGKPFFCMDCNISFPTTEEHQHHKLMHDQMK-LTCPICNKVFVSTKTLKRHAIVHSGEKPYECRVCKKRFARAGDLKAHSPVHHEERPFKCEHCAKSFSRFSSLKEHIRLHSGIYPYKCNICDKIFNHQSHLKVHLQTHTGEKPHKCFLCPKEFSRKISLKHHLRTH 2998
FN +S L++HQ H K+F C ++ CG F AS + VH +E+PYK C++ ++ G F S+L H+ HTG+KP+KC+ C K F L H HTG+K +KC+ CD +S L H+ +H GEKPYKC+ C K F+R + L+ H+R+HTGEKPY CE CGK FS S L+ H++ H KPF C +C F + Q H+ +H K C C K F TL H VH+GEKPY+C C K F++ L++H VH ERP+ CE C K FS+ + L+ H R+H+ + PYKC +C K F+ S L+ H + HTG KP+KC +C K FS L+ H R H
Sbjct: 396 FNQSSCLQVHQKIHTEEKLYTDIEYGKSFICSSNLDIQHRVHMEENSYNSEECGNGFSLASHFQDLQIVHTKEQPYKRYVCSNSFSHNLYLQGHPKIHIGEKPRKEHGNGFNWSSKLKDHQRVHTGQKPYKCNICGKGFNHRSVLNVHQRVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGE---KPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVH 799 HSP 4 Score: 236.498 bits (602), Expect = 1.418e-63 Identity = 136/363 (37.47%), Postives = 190/363 (52.34%), Query Frame = 2
Query: 1706 KKFVCEICGKEYVRAGSYYTHLREHGAQTKKHKCMICVQSFDTVEEIKQHLLTHKRETKESKTYDEFICTICNKHFNSASALRLHQLTHVNVKNFYCKADGCGKSFPNASALRIHSRVHQEEKPYKCTHEDCGKTFKTPSELTRHEFRHTGEKPFKCDKCDKSFIRNDDLRRHSFTHTGQKKFKCDMCDFSCIQSFDLVKHKYIHGGEKPYKCKMCPKQFTRPARLREHERLHTGEKPYTCEICGKSFSTLSSLKSHKQTHENNARGKPFFCMDCNISFPTTEEHQ-HHKLMHDQMKLTCPICNKVFVSTKTLKRHAIVHSGEKPYECRVCKKRFARAGDLKAHSPVHHEERPFKCEHCAKSF 2791
K + CE C K + R+ H R H + K +KC C + F ++ H H E + C C K F+ +S L+ HQ H K F C+ CGK F + L+IH RVH EKPYKC E+CGK F S L H+ HTGEKP++CD+C KSF + L+ H H+G++ + C++C Q L H+ +H KPYKC+MC K F++ +RL H R+HTG KPY CE+C K FS S L++H++ H G+P+ C C F Q HH++ + C +C K F L+ H VH+GEKPY+C C K F + L H VH ++ +K E K +
Sbjct: 551 KPYKCEECDKGFSRSSYLQAHQRVHTGE-KPYKCEECGKGFSRNSYLQGHQRVHTGEKP-------YKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEE--CGKGFSWSFNLQIHQRVHTGEKPYKC--EECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVH---VEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDKFYKSEDYGKDY 898 HSP 5 Score: 171.014 bits (432), Expect = 8.058e-43 Identity = 105/283 (37.10%), Postives = 144/283 (50.88%), Query Frame = 2
Query: 1706 KKFVCEICGKEYVRAGSYYTHLREHGAQTKKHKCMICVQSFDTVEEIKQHLLTHKRETKESKTYDEFICTICNKHFNSASALRLHQLTHVNVKNFYCKADGCGKSFPNASALRIHSRVHQEEKPYKCTHEDCGKTFKTPSELTRHEFRHTGEKPFKCDKCDKSFIRNDDLRRHSFTHTGQKKFKCDMCDFSCIQSFDLVKHKYIHGGEKPYKCKMCPKQFTRPARLREHERLHTGEKPYTCEICGKSFSTLSSLKSHKQTHENNARGKPFFCMDCNISFPTTE 2554
K F CE CGK + + + H R H + K +KC C + F LL H+R K Y C C K F+ S L+ HQ H + + C+ CGK F + L+ H RVH KPYKC E CGK F S L H HTG KP+KC+ C K F + L+ H H + +KC+ C L H +H GEKPYKC++C K F++ + L+ H+R+HTGEKPY C+ CGK F S L H++ H ++ K + D +P++E
Sbjct: 635 KPFKCEECGKGFSWSFNLQIHQRVHTGE-KPYKCEECGKGFSKAST----LLAHQRVHTGEKPYQ---CDECGKSFSQRSYLQSHQSVHSGERPYICEV--CGKGFSQRAYLQGHQRVHTRVKPYKC--EMCGKGFSQSSRLEAHRRVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSD---KFYKSEDYGKDYPSSE 902 HSP 6 Score: 155.606 bits (392), Expect = 4.840e-38 Identity = 92/254 (36.22%), Postives = 131/254 (51.57%), Query Frame = 2
Query: 1706 KKFVCEICGKEYVRAGSYYTHLREHGAQTKKHKCMICVQSFDTVEEIKQHLLTHKRETKESKTYDEFICTICNKHFNSASALRLHQLTHVNVKNFYCKADGCGKSFPNASALRIHSRVHQEEKPYKCTHEDCGKTFKTPSELTRHEFRHTGEKPFKCDKCDKSFIRNDDLRRHSFTHTGQKKFKCDMCDFSCIQSFDLVKHKYIHGGEKPYKCKMCPKQFTRPARLREHERLHTGEKPYTCEICGKSFSTLSSL 2467
K + CE CGK + +A + H R H + K ++C C +SF ++ H H E +IC +C K F+ + L+ HQ H VK + C+ CGK F +S L H RVH KPYKC E C K F S L H+ H +P+KC++C K F L+ H HTG+K +KC++C Q +L H+ +H GEKPYKC C K F + L H+R+H+ +K Y E GK + + +L
Sbjct: 663 KPYKCEECGKGFSKASTLLAHQRVHTGE-KPYQCDECGKSFSQRSYLQSHQSVHSGERP-------YICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEM--CGKGFSQSSRLEAHRRVHTGGKPYKC--EVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDKFYKSEDYGKDYPSSENL 904 HSP 7 Score: 95.5153 bits (236), Expect = 1.901e-19 Identity = 64/194 (32.99%), Postives = 87/194 (44.85%), Query Frame = 2
Query: 1676 KGNITARSECKKFVCEICGKEYVRAGSYYTHLREHGAQTKKHKCMICVQSFDTVEEIKQHLLTHKRETKESKTYDEFICTICNKHFNSASALRLHQLTHVNVKNFYCKADGCGKSFPNASALRIHSRVHQEEKPYKCTHEDCGKTFKTPSELTRHEFRHTGEKPFKCDKCDKSFIRNDDLRRHSFTHTGQKKFK 2257
+G+ + K + CE+CGK + ++ H R H K +KC +C K F+ +S L+ HQ HV + + C+ CGK F S+L+ H RVH EKPYKC E CGK F S L H+ HTGEKP+KCD C K F + L H H+ K +K
Sbjct: 737 QGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHRRVHTG-GKPYKCEVCT-----------------------------------KGFSESSRLQAHQRVHVEGRPYKCEQ--CGKGFSGYSSLQAHHRVHTGEKPYKC--EVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDKFYK 890 The following BLAST results are available for this feature:
BLAST of TCONS_00018247 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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