TCONS_00018244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018244
Unique NameTCONS_00018244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018244 ID=TCONS_00018244|Name=TCONS_00018244|organism=Clytia hemisphaerica|type=transcript|length=550bp
tttatatttgaaaaagtcaaaatattacaacaaactactttttttattga
aaaacagcaaaattctgtgaaaaagtacccaaatagtatcctgtacttgc
ttgaagagtgaaaaatacacaccctcacccccaaagtagtaccgggtact
aacttttttgaaatgcaaagaTAAACACCACCACCTGGCTATGGGTAAGT
ACCCTGTGTCTGTACCCCCCTGAAATTTTTGGATCACATCACTATAATAA
TTTCAATCACATTTTATAGCTAGGTTATCTTATATATATACAAAAGATTT
AAGTGTTTAGAGTCATGTGGCATGAAATCTAAGAGCTTTTTAAACAAGCC
CAATAAAATTCTATTAAGTAATAATAttgagaaattaaagaaaaacattt
acaGTAGACTCGCGGTTATTGGACGAACCTCAACATGTTCCACATTTTCC
ATTTGCATCTGCTCACTTACTAAACAATGGTAAAATCTCCCTCGATTATA
CGGAACttgtttactttcacttttcaaaagGGATTAGGATTAGGAATATC
Run BLAST on NCBI

transcript from alignment at sc0000291:322476..323025

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018244 ID=TCONS_00018244|Name=TCONS_00018244|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at sc0000291:322476..323025 (Clytia hemisphaerica)
GATATTCCTAATCCTAATCCcttttgaaaagtgaaagtaaacaaGTTCCG
TATAATCGAGGGAGATTTTACCATTGTTTAGTAAGTGAGCAGATGCAAAT
GGAAAATGTGGAACATGTTGAGGTTCGTCCAATAACCGCGAGTCTACtgt
aaatgtttttctttaatttctcaaTATTATTACTTAATAGAATTTTATTG
GGCTTGTTTAAAAAGCTCTTAGATTTCATGCCACATGACTCTAAACACTT
AAATCTTTTGTATATATATAAGATAACCTAGCTATAAAATGTGATTGAAA
TTATTATAGTGATGTGATCCAAAAATTTCAGGGGGGTACAGACACAGGGT
ACTTACCCATAGCCAGGTGGTGGTGTTTAtctttgcatttcaaaaaagtt
agtacccggtactactttgggggtgagggtgtgtatttttcactcttcaa
gcaagtacaggatactatttgggtactttttcacagaattttgctgtttt
tcaataaaaaaagtagtttgttgtaatattttgactttttcaaatataaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010255XLOC_010255Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018244-exon-sc0000291-1491911889:322476..323025TCONS_00018244-exon-sc0000291-1491911889:322476..323025Clytia hemisphaericaexon
TCONS_00018244-exon-sc0000291-1510915933:322476..323025TCONS_00018244-exon-sc0000291-1510915933:322476..323025Clytia hemisphaericaexon
TCONS_00018244-exon-sc0000291-1575043694:322476..323025TCONS_00018244-exon-sc0000291-1575043694:322476..323025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:322476..323025 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.526737	0.306379	0.485108	0.594603	2.84045	1.45535	2.03886	2.16892	0.530704	0.895795	1.95828	0.855688	1.06066	0.747523	0.838746	0.510278	0.399528	0.162932	1.88015	0.474278	1.22909	1.05753	1.43726	1.52684	1.23669	1.89871	1.45284	1.53436	1.9909	1.90432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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