TCONS_00018235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018235
Unique NameTCONS_00018235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018235 ID=TCONS_00018235|Name=TCONS_00018235|organism=Clytia hemisphaerica|type=transcript|length=264bp
NNCTATCCAATTATAGATTTTACCAGTTATTCCTAGCCTTTTGAATTTCG
ACAGAACAATTGAATGATCCACTTTATCGAAAGCTTTAGAAAAGTCTAAG
TAAACAAAATCTGCATTGGTCTCTTTGTCAAGTAAGTTTAATATAAGATC
ATGTTGTTCAACGAGCTGACTCAGACAAGATCTTCCACTTCTAAAGCCAT
GCTGATTTGggttgaaaaagttattttcgtcCATGTGTTTGACAATGTGT
TTTCTGATGACTTN
Run BLAST on NCBI

transcript from alignment at sc0000291:61670..61933

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018235 ID=TCONS_00018235|Name=TCONS_00018235|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at sc0000291:61670..61933 (Clytia hemisphaerica)
NAAGTCATCAGAAAACACATTGTCAAACACATGgacgaaaataacttttt
caaccCAAATCAGCATGGCTTTAGAAGTGGAAGATCTTGTCTGAGTCAGC
TCGTTGAACAACATGATCTTATATTAAACTTACTTGACAAAGAGACCAAT
GCAGATTTTGTTTACTTAGACTTTTCTAAAGCTTTCGATAAAGTGGATCA
TTCAATTGTTCTGTCGAAATTCAAAAGGCTAGGAATAACTGGTAAAATCT
ATAATTGGATAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010246XLOC_010246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018235-exon-sc0000291-1491911889:61670..61933TCONS_00018235-exon-sc0000291-1491911889:61670..61933Clytia hemisphaericaexon
TCONS_00018235-exon-sc0000291-1510915933:61670..61933TCONS_00018235-exon-sc0000291-1510915933:61670..61933Clytia hemisphaericaexon
TCONS_00018235-exon-sc0000291-1575043694:61670..61933TCONS_00018235-exon-sc0000291-1575043694:61670..61933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:61670..61933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85487	1.20586	5.60048	6.1641	5.8366	1.31776	1.58982	2.23256	4.16817	2.58148	0	6.58845	2.05603	1.70816	0.702172	0.376769	0.464148	0.475737	1.31451	2.06332	2.39119	4.37378	0	2.57804	2.65532	2.96227	4.239	0	3.43127	2.79674
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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