TCONS_00018226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018226
Unique NameTCONS_00018226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018226 ID=TCONS_00018226|Name=TCONS_00018226|organism=Clytia hemisphaerica|type=transcript|length=2791bp
GGAAAATGCCCCTCgacaaatttttattattttctaacACGAGTCAAATA
TCTTCGTGTTATTAGTATGCTACGTTTAAACCCGACTGAGACTGCGGTCG
ACAACAACACACTTGGACCTGATGTCGACAGGTCGATGCAGTTTGTTAAA
TGATGGATGAAGTAAAGAAGATTGTAAGAGCTCTTTTAATCTCCACAAAA
AATGGCCTATCAGTTAGCGAACTTTGCTCCGAATACTCGTTGGTAGCATC
CAAACCCTTACCCTACAAAGAACTAGGATATTATTCTGCAGTTGAACTTG
TGAAAGACATGCCAGATGTTGTAAGACCTATTTTCATTTCTGGGGGTGTT
ATGTTGCTTAAAGGGATAGCTGACAGCTCAACAGCTCACATTAATGAACT
TGTGCGGCATCAAAAGTCTGTTAGATACAATACAAAAATTGTTACAAATG
TTCAGCAGAAGCCTGTGAAAATGGTTGTACCCGATTATGTAAGAACAAAG
ATTTCAAAACTCATTGCAACATACCCAAGAGGAGTTGAGATAAAAAACTT
TGAAGAGTCTTATAAAAGAAGATATGGTAGAAAAATGGATTGTCAATCCT
TTGGATTCAATGATATGAAAGAAGTTATTATGAAGTGCCAAGATATTGTG
AAAGTGAAACATCCAGCTCCACATATAGCCTTTTTATATCCTACCCAACA
ATccctgaaaaaagaagaagagagaATTCCCCTGTTTTCCAATCCTCAAC
AAAGTCAAACCAACCATTTTGCACCCTTACCAAATCGCCATCAACAATCT
CGCTCCTATTACCAACAATTAACTGACCCAATTTCAAAGAATAGCGCTTT
GCCACAATCTGTCAAAATGGAGATTTATACGTTGTTGACAAAATTTAAGT
TTGGATTACCAGctgcaaaatttatttttgaatacaaACAGTTTTTCCAA
AAGTCATTTCAAATCCACACCTATGGTTTTCACAGTGTCATTGAAATGAT
GTCCAAAATTCCCGATATTGTAAAGATTGAAAGACCACAGAGTGGAGGAG
ATTGGATTTTAAGATCTGTAGCAACTCAGGAACTCCCCGCCATTGTGAGT
AATAACAAACACCCTTCACCAACCAAACAAGTTGGagacaaaataaaatg
ttacatTTCCTATATCATCAGTCCAAGTTCCTTTTGGTATCAagataaaa
aatatgtttcagAACTTGACGAATTGATGGAAAGAATAAATGAATTTTAT
AACTCAGTTAAAGGAGACCTATTTACTTCACTTGATTTCCAGCCTGGTCA
AATTTGTTGTGCATTATATTCAGAGGATAATCAATGGTATCGAGCTATTG
TCAAAAGCAAAGTTTCAAAAGACACAGTCAAAGTTCACTATATCGATTAT
GGAAATGAAACTACTGTTGAAATTTCTTCATTGAGACTTTTACTTCAAGA
ATTTTACACCTTGCAGCATCAAGCGCAACAAGGAAGACTTGCTGATATTG
AACCCTGTAATGATATTTGGAGTGATCTTGGcattaaagaatttttcaat
cAGACACAAGATCAAGAACTTTTGGCTACAGTTGTTAAAGTTGACCGAGC
ACATAACCTTGTTCTTGCCCCAGCAAACGATGATTCCCAAAATATAGCCC
AAATTCTATCGTTTAAAGGTTTTGGAAACATGAGAGGTTATTCAGAGACT
ATCAATAAGGATAAAAATTCCCAAAAAGGTTCTTGTGACCAAGAACagat
aaacaatcttaaaaactatTACCAAAATTATTATCAAGCTTTGAAAGATG
TTTCACAACTATCTACCAAACTGCAGCAAAACCCTGTCATACCCAAAACA
GTATCACCTACTCCAATACAGCAACCACAGAACGTTTCAGAAAGCATCAA
ATTAATGAAATCATTAGAAGTAACAGAACATTTTGTTATTCACATGATTA
ACTACAAAGATGAAGCATTTGTTGCTGGTGCTGAGATTTCACATCTATTT
TGGAATGTTGATATATTGCGACAAATGGCACGGCAAAAAAGAATCAACTT
GGTAAGAGAAATCATCACCTCTGAAGATTCTCCCAAACTCATTGAACTAT
GCAAACAAGAAGATGTCAAAGGAATGTTAGATTGTGGTACAAATCAAAGT
TTGATAGTTTATAATTTGACAGAAGTTCCACAATTATTTCAAGCATTCAA
ACCTATTCATGAGAATAGCAAAGCtctgattgaaaaagaaattgaaatgt
tAGAGTcacttaaagaaaaatattgggATGCAAATAATATGAAAATGTCA
GAGGCAGAATCTGCTGCATTGCAAATACAAGCATTGAAATTCAAGAAGAA
AAGGCTTTACATGAGTATGATTACAAATGCTGCAAAGGAAAATACGATGG
ACGAAATCCTTGCAATTGAAAAAGAGATCAATTTACTAAGTATAGGCTAG
AattgatttcaatattttgtcatATATACACTTGTCTTTCACCTTACAAC
ATCTTACAAGATTTTTAAATGACTCCGAGATCCGTTTTTGAGGTACTTTT
TTCTTATTGAATTCCTGGTCTTATGCTATGGTACCTTTATTTCGTTTTCT
TTAGtagtcaatattttttaattaggTAGTGTAAATAGTTTCTTAAAACA
GAAAGAAAGGGCATTTCCATGTATAGAAGATGTATAAAACGagaatatta
tatttttatctaacctgtaaaactaaaaaataagCAATAAGAATTCTAGC
TgcagattttttttatcaatgaaATAGGGATTTGTGCCAAG
Run BLAST on NCBI

transcript from alignment at sc0000291:334978..337768-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018226 ID=TCONS_00018226|Name=TCONS_00018226|organism=Clytia hemisphaerica|type=transcript|length=2791bp|location=Sequence derived from alignment at sc0000291:334978..337768- (Clytia hemisphaerica)
GGAAAATGCCCCTCGACAAATTTTTATTATTTTCTAACACGAGTCAAATA
TCTTCGTGTTATTAGTATGCTACGTTTAAACCCGACTGAGACTGCGGTCG
ACAACAACACACTTGGACCTGATGTCGACAGGTCGATGCAGTTTGTTAAA
TGATGGATGAAGTAAAGAAGATTGTAAGAGCTCTTTTAATCTCCACAAAA
AATGGCCTATCAGTTAGCGAACTTTGCTCCGAATACTCGTTGGTAGCATC
CAAACCCTTACCCTACAAAGAACTAGGATATTATTCTGCAGTTGAACTTG
TGAAAGACATGCCAGATGTTGTAAGACCTATTTTCATTTCTGGGGGTGTT
ATGTTGCTTAAAGGGATAGCTGACAGCTCAACAGCTCACATTAATGAACT
TGTGCGGCATCAAAAGTCTGTTAGATACAATACAAAAATTGTTACAAATG
TTCAGCAGAAGCCTGTGAAAATGGTTGTACCCGATTATGTAAGAACAAAG
ATTTCAAAACTCATTGCAACATACCCAAGAGGAGTTGAGATAAAAAACTT
TGAAGAGTCTTATAAAAGAAGATATGGTAGAAAAATGGATTGTCAATCCT
TTGGATTCAATGATATGAAAGAAGTTATTATGAAGTGCCAAGATATTGTG
AAAGTGAAACATCCAGCTCCACATATAGCCTTTTTATATCCTACCCAACA
ATCCCTGAAAAAAGAAGAAGAGAGAATTCCCCTGTTTTCCAATCCTCAAC
AAAGTCAAACCAACCATTTTGCACCCTTACCAAATCGCCATCAACAATCT
CGCTCCTATTACCAACAATTAACTGACCCAATTTCAAAGAATAGCGCTTT
GCCACAATCTGTCAAAATGGAGATTTATACGTTGTTGACAAAATTTAAGT
TTGGATTACCAGCTGCAAAATTTATTTTTGAATACAAACAGTTTTTCCAA
AAGTCATTTCAAATCCACACCTATGGTTTTCACAGTGTCATTGAAATGAT
GTCCAAAATTCCCGATATTGTAAAGATTGAAAGACCACAGAGTGGAGGAG
ATTGGATTTTAAGATCTGTAGCAACTCAGGAACTCCCCGCCATTGTGAGT
AATAACAAACACCCTTCACCAACCAAACAAGTTGGAGACAAAATAAAATG
TTACATTTCCTATATCATCAGTCCAAGTTCCTTTTGGTATCAAGATAAAA
AATATGTTTCAGAACTTGACGAATTGATGGAAAGAATAAATGAATTTTAT
AACTCAGTTAAAGGAGACCTATTTACTTCACTTGATTTCCAGCCTGGTCA
AATTTGTTGTGCATTATATTCAGAGGATAATCAATGGTATCGAGCTATTG
TCAAAAGCAAAGTTTCAAAAGACACAGTCAAAGTTCACTATATCGATTAT
GGAAATGAAACTACTGTTGAAATTTCTTCATTGAGACTTTTACTTCAAGA
ATTTTACACCTTGCAGCATCAAGCGCAACAAGGAAGACTTGCTGATATTG
AACCCTGTAATGATATTTGGAGTGATCTTGGCATTAAAGAATTTTTCAAT
CAGACACAAGATCAAGAACTTTTGGCTACAGTTGTTAAAGTTGACCGAGC
ACATAACCTTGTTCTTGCCCCAGCAAACGATGATTCCCAAAATATAGCCC
AAATTCTATCGTTTAAAGGTTTTGGAAACATGAGAGGTTATTCAGAGACT
ATCAATAAGGATAAAAATTCCCAAAAAGGTTCTTGTGACCAAGAACAGAT
AAACAATCTTAAAAACTATTACCAAAATTATTATCAAGCTTTGAAAGATG
TTTCACAACTATCTACCAAACTGCAGCAAAACCCTGTCATACCCAAAACA
GTATCACCTACTCCAATACAGCAACCACAGAACGTTTCAGAAAGCATCAA
ATTAATGAAATCATTAGAAGTAACAGAACATTTTGTTATTCACATGATTA
ACTACAAAGATGAAGCATTTGTTGCTGGTGCTGAGATTTCACATCTATTT
TGGAATGTTGATATATTGCGACAAATGGCACGGCAAAAAAGAATCAACTT
GGTAAGAGAAATCATCACCTCTGAAGATTCTCCCAAACTCATTGAACTAT
GCAAACAAGAAGATGTCAAAGGAATGTTAGATTGTGGTACAAATCAAAGT
TTGATAGTTTATAATTTGACAGAAGTTCCACAATTATTTCAAGCATTCAA
ACCTATTCATGAGAATAGCAAAGCTCTGATTGAAAAAGAAATTGAAATGT
TAGAGTCACTTAAAGAAAAATATTGGGATGCAAATAATATGAAAATGTCA
GAGGCAGAATCTGCTGCATTGCAAATACAAGCATTGAAATTCAAGAAGAA
AAGGCTTTACATGAGTATGATTACAAATGCTGCAAAGGAAAATACGATGG
ACGAAATCCTTGCAATTGAAAAAGAGATCAATTTACTAAGTATAGGCTAG
AATTGATTTCAATATTTTGTCATATATACACTTGTCTTTCACCTTACAAC
ATCTTACAAGATTTTTAAATGACTCCGAGATCCGTTTTTGAGGTACTTTT
TTCTTATTGAATTCCTGGTCTTATGCTATGGTACCTTTATTTCGTTTTCT
TTAGTAGTCAATATTTTTTAATTAGGTAGTGTAAATAGTTTCTTAAAACA
GAAAGAAAGGGCATTTCCATGTATAGAAGATGTATAAAACGAGAATATTA
TATTTTTATCTAACCTGTAAAACTAAAAAATAAGCAATAAGAATTCTAGC
TGCAGATTTTTTTTATCAATGAAATAGGGATTTGTGCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010243XLOC_010243Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018226-exon-sc0000291-1575043694:334978..337768TCONS_00018226-exon-sc0000291-1575043694:334978..337768Clytia hemisphaericaexon
TCONS_00018226-exon-sc0000291-1510915933:334978..337768TCONS_00018226-exon-sc0000291-1510915933:334978..337768Clytia hemisphaericaexon
TCONS_00018226-exon-sc0000291-1491911889:334978..337768TCONS_00018226-exon-sc0000291-1491911889:334978..337768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:334978..337768 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.9807	3.58191	1.41704	1.27854	11.0723	7.75467	9.52169	9.69138	5.62052	7.2766	5.43121	5.40027	5.20205	5.1264	6.71901	6.75205	6.25393	6.5497	2.01863	1.84027	6.181	5.94741	8.38802	9.08162	10.2256	14.4768	2.54964	1.15773	4.69147	5.50528
Blast
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BLAST of TCONS_00018226 vs. Swiss-Prot (Human)
Match: TDRD5 (Tudor domain-containing protein 5 OS=Homo sapiens GN=TDRD5 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 5.124e-28
Identity = 103/379 (27.18%), Postives = 172/379 (45.38%), Query Frame = 3 
Query:  162 VKKIVRALLISTKNGLSVSELCSEYSLVASKPLPYKELGYYSAVELVKDMPDVVRPIFISGGVMLLKGIADSSTAHINELVRHQKS---VRYNT-KIVTNVQQKP-----------VKMVVPDYVRTKISKLIATYPRGVEIKNFEESYKRRYGRKMDCQSFGFNDMKEVIMKCQDIVKVKHPAPHIAFLYPTQQSLKKEEERI--------------------------PLFSNP----------------------QQSQTNHFAPLPNRHQQSRSYYQQLTDPISKNSALPQSVKMEIYTLLTKFKFGLPAAKFIFEYKQFFQKSFQIHTYGFHSVIEMMSKIPDIVKIERPQSGGDWILRSVATQELPAIVSNNK 1109
            ++K +R+LLISTK+GLS  EL  EY L+    LP + LGY S +ELV DMPDVVR    +GG ++LK I D ST  I  LV  Q+S   +R +  K   ++   P           V  ++P  V++++  L+A  P  V + +FE+++ +R+GR      +GF  M EV+    D++ V+        L   ++S+ +E+ R                           P FS P                      + S+ NH   L     Q  + ++ +   I     +   +K +I  +++KF  GL  +K + EY+  F++       GF +V E++  + DI+ +E  +   D ++     + LP + S+ K
Sbjct:   11 LRKEIRSLLISTKDGLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDMPDVVRVCPGAGGTVILKAIPDESTKGIASLVAKQRSSHKLRNSMHKGRPSIYSGPRSHRRVPYRGRVAPILPAVVKSELKDLLALSP--VLLSDFEKAFAKRFGRSFQYMQYGFLSMFEVLNAASDVISVEQ--TRAGSLLMLKKSVTEEKPRGCPAGKIFTQPFRMKQGSYSTGFPVAKPCFSQPTSNMEPPKQIMSMEKTSKLNVVETSRLNHTEKL----NQLENTFKSVIAQIGPGGTISSELKHKIKFVVSKFPEGLFISKLLGEYEVIFKEQLSPKKLGFLNVTELVGALSDILHVEFRKGHQDLLVFDADKKPLPPVQSDKK 381
The following BLAST results are available for this feature:
BLAST of TCONS_00018226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TDRD55.124e-2827.18Tudor domain-containing protein 5 OS=Homo sapiens ... [more]
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