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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018204 ID=TCONS_00018204|Name=TCONS_00018204|organism=Clytia hemisphaerica|type=transcript|length=1950bp
CAACGTGGATCAAAATACTGTTctctaaatttcttttttttgtcaaCCGC
CAAATCATTAATAACGGATGAAGTTGATCATTTCGTCAGTTTGTTTTGCG
AGAGTCTCTTAACGCGGTTCCACGTTTCGAAATATTTTGGAGGAGatatt
ttgatacattttattgCAAGATGAAAATACAAGcgtTGTTCGTTACATCG
ATAAGTTTGTTGCTGTTGGTTCGCCAAGCACCATGCAAACATATAACCTC
AGTCTCTGAAATCGAAGATTTATTGTCCTTAGTGAAAAAAACAATCAAGT
TGAAACAAAATGATGATTCCGATCCAAATTCAACTCAAAAAGAGCTCACA
GCAGACGGGTGCATCAAGAAATGCCGCAATAATTACATGACAGCATTACT
GGATAGTAAGACGGAAGTACAAACTCAAGGGGCTGACGTGTTCATCAAAT
GTTTCCCAGCCTGCTTCATTCCCAAAGATCATGGTCAAATTACAGACCCA
ATCAAATGTAAGCTGTCTTGTGGAACCGCATTTCATAATTGTTATTTGAA
AGCTGAGAGCGTTGAATCTTTCACTTGTGTTGTTGGAAAGGATGCATGCG
AGGCTGATTGCGATTCCCTGAAAGAAAGAGACGAGAAAGAAGATTCCCCG
ATTGATGTTTTAGATTCCCTAGAAAGGAAATACAATTCGCTGGCAAAATT
GAATTCGGATAATGTATTTCTACAAAAGAAAAGGATGGTCAGCAGTGCTG
GAGGATCGAATAGATGCTTTAAGAAATGCACATGGACTTTTCGACATTGT
GCAAAGTCGAATGCTGTTGCATCATACAAATTCAACGTTTGTGACCGCCT
ACAGTCCCAATGTAATCGTCagtgtttcaaagttttgagtTAAACCTAAG
TAAGCGCACTCAActatcaaattttccagttttttatgaaagtgAATCAC
AAGTAAAAATATTATGTCATTTTGATCCTAAACGCATGAGACGTTAAAAG
TGTTGTAGACTCTAATAAACAATGGTAAGCCATATAATTTACGGATTTCA
CATGGGAAAACAATAAAAGAGTGACTCTTGATTTCATGGAGTTTCATGGT
TCCTTAAATTTCTCTTTATATGTAAATAAGTTGGGGTGAACGtaaaatgt
tatcaaaatattttacaatttcaattattcatttcagattttattttaca
aatttataatatttcttAAACTATTTCTTAATAATAAATACAATAATAAA
TAAGATAAACCTAATTGTTACGCgcgaaataaataaacaaaatgaaTACA
AATTATTGGAAAGTTTTTTGGCAATTATTATTACATACCATATGGGCTGC
GTCGCACACTTTACCAATATCACCCCAAGTTTTACATGTCTTATAATTAT
TGTTACATTCAAGTTTACATGAGACTCTCTTACTAAGGGTTGGTGTCTTT
TCCACTTCCCGTCTCCTGTCCTCCACTACACTTCCTTGTTTTTGACTTGC
ACCGCATTGTCTCATACAAGTATCCCTACCACCCATACATAAATAGATTT
CCAATTTGTTAGATTGTGTTAGGCAATTATTCATGTATCGTAAACAGGTT
TTTGAACAACTTTTGCCACCGCTCGATTTTCCCGGTATGATAGAATTCCC
GAAAAAGCAAACTGGGTAATTTTCGCTGTATCTTTTGTCACAGTCTACTG
CCTTTTCTGAAGtctcatttttacatttttgataaatttcacgGATTTTT
CGGCCGCAAATTTGACTGTCTTCAGATTTGATCACGGGaagtgtttgttt
gtttttttgttgtagTTTGGCGGTCTCCGTTTCGATTAGTTCTTCTTTGT
AGACGTTTAGAAGAGCTTGTAGCTCGTTGATTGATTGCACAGTCATTGTG
TTACAAATTCCCAACCAGGTTGTTACCAGTAAGGATAAGATgatgaaatc Run BLAST on NCBI protein sequence of TCONS_00018204-protein >TCONS_00018204-protein ID=TCONS_00018204-protein|Name=TCONS_00018204-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MKIQALFVTSISLLLLVRQAPCKHITSVSEIEDLLSLVKKTIKLKQNDDS
DPNSTQKELTADGCIKKCRNNYMTALLDSKTEVQTQGADVFIKCFPACFI
PKDHGQITDPIKCKLSCGTAFHNCYLKAESVESFTCVVGKDACEADCDSL
KERDEKEDSPIDVLDSLERKYNSLAKLNSDNVFLQKKRMVSSAGGSNRCF
KKCTWTFRHCAKSNAVASYKFNVCDRLQSQCNRQCFKVLS Run BLAST on NCBI transcript from alignment at sc0000291:14426..16866- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018204 ID=TCONS_00018204|Name=TCONS_00018204|organism=Clytia hemisphaerica|type=transcript|length=2441bp|location=Sequence derived from alignment at sc0000291:14426..16866- (Clytia hemisphaerica)
CAACGTGGATCAAAATACTGTTCTCTAAATTTCTTTTTTTTGTCAACCGC
CAAATCATTAATAACGGATGAAGTTGATCATTTCGTCAGTTTGTTTTGCG
AGAGTCTCTTAACGCGGTTCCACGTTTCGAAATATTTTGGAGGAGATATT
TTGATACATTTTATTGCAAGATGAAAATACAAGGTAATTTTTATGCGAAT
TTGTTAACGTTGTTAATTTTATAAGCCTTGGTGTTATGGCGAGTTCAGTA
TAACCATTTTTCAGTTCATTTATATGAGCCCTCCCCCCAGCGGTAAGTCT
GATCCCTTTGAAGTCCAAATCACGCATCACGGCTCAAAAAATTTTCAAAT
CACGGTCACGCTTTGACCTCTGATCATGCAATCACGAAGAAAGAATTTCC
AAATCACGTAAGAAAAAAAGGTCCCTATCTCGTTATCACGAAAACAAGGG
CCTTTTATTATTTCAGTTGCGTTGTTCGGGTCCTAGTTTTGATTGGCAAA
TAAATTCGATAACCTTGAATAGGGGCAAACTACGTCGTCTAGTCTACGTT
TGTGTGTGCGTCAAAACAATGACTATCACTCGACCCTCGTTAAGAAGAGA
AATCTTCCGTATAGTTTATGTACTAGATACAGGAATGAGATTTATTTGTA
GAATACATGTTTAATTTTTTTTAGCGTTGTTCGTTACATCGATAAGTTTG
TTGCTGTTGGTTCGCCAAGCACCATGCAAACATATAACCTCAGTCTCTGA
AATCGAAGATTTATTGTCCTTAGTGAAAAAAACAATCAAGTTGAAACAAA
ATGATGATTCCGATCCAAATTCAACTCAAAAAGAGCTCACAGCAGACGGG
TGCATCAAGAAATGCCGCAATAATTACATGACAGCATTACTGGATAGTAA
GACGGAAGTACAAACTCAAGGGGCTGACGTGTTCATCAAATGTTTCCCAG
CCTGCTTCATTCCCAAAGATCATGGTCAAATTACAGACCCAATCAAATGT
AAGCTGTCTTGTGGAACCGCATTTCATAATTGTTATTTGAAAGCTGAGAG
CGTTGAATCTTTCACTTGTGTTGTTGGAAAGGATGCATGCGAGGCTGATT
GCGATTCCCTGAAAGAAAGAGACGAGAAAGAAGATTCCCCGATTGATGTT
TTAGATTCCCTAGAAAGGAAATACAATTCGCTGGCAAAATTGAATTCGGA
TAATGTATTTCTACAAAAGAAAAGGATGGTCAGCAGTGCTGGAGGATCGA
ATAGATGCTTTAAGAAATGCACATGGACTTTTCGACATTGTGCAAAGTCG
AATGCTGTTGCATCATACAAATTCAACGTTTGTGACCGCCTACAGTCCCA
ATGTAATCGTCAGTGTTTCAAAGTTTTGAGTTAAACCTAAGTAAGCGCAC
TCAACTATCAAATTTTCCAGTTTTTTATGAAAGTGAATCACAAGTAAAAA
TATTATGTCATTTTGATCCTAAACGCATGAGACGTTAAAAGTGTTGTAGA
CTCTAATAAACAATGGTAAGCCATATAATTTACGGATTTCACATGGGAAA
ACAATAAAAGAGTGACTCTTGATTTCATGGAGTTTCATGGTTCCTTAAAT
TTCTCTTTATATGTAAATAAGTTGGGGTGAACGTAAAATGTTATCAAAAT
ATTTTACAATTTCAATTATTCATTTCAGATTTTATTTTACAAATTTATAA
TATTTCTTAAACTATTTCTTAATAATAAATACAATAATAAATAAGATAAA
CCTAATTGTTACGCGCGAAATAAATAAACAAAATGAATACAAATTATTGG
AAAGTTTTTTGGCAATTATTATTACATACCATATGGGCTGCGTCGCACAC
TTTACCAATATCACCCCAAGTTTTACATGTCTTATAATTATTGTTACATT
CAAGTTTACATGAGACTCTCTTACTAAGGGTTGGTGTCTTTTCCACTTCC
CGTCTCCTGTCCTCCACTACACTTCCTTGTTTTTGACTTGCACCGCATTG
TCTCATACAAGTATCCCTACCACCCATACATAAATAGATTTCCAATTTGT
TAGATTGTGTTAGGCAATTATTCATGTATCGTAAACAGGTTTTTGAACAA
CTTTTGCCACCGCTCGATTTTCCCGGTATGATAGAATTCCCGAAAAAGCA
AACTGGGTAATTTTCGCTGTATCTTTTGTCACAGTCTACTGCCTTTTCTG
AAGTCTCATTTTTACATTTTTGATAAATTTCACGGATTTTTCGGCCGCAA
ATTTGACTGTCTTCAGATTTGATCACGGGAAGTGTTTGTTTGTTTTTTTG
TTGTAGTTTGGCGGTCTCCGTTTCGATTAGTTCTTCTTTGTAGACGTTTA
GAAGAGCTTGTAGCTCGTTGATTGATTGCACAGTCATTGTGTTACAAATT
CCCAACCAGGTTGTTACCAGTAAGGATAAGATGATGAAATC Coding sequence (CDS) from alignment at sc0000291:14426..16866- >TCONS_00018204 ID=TCONS_00018204|Name=TCONS_00018204|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at sc0000291:14426..16866- (Clytia hemisphaerica)
CGTTGTTCGTTACATCGATAAGTTTGTTGCTGTTGGTTCGCCAAGCACCA
TGCAAACATATAACCTCAGTCTCTGAAATCGAAGATTTATTGTCCTTAGT
GAAAAAAACAATCAAGTTGAAACAAAATGATGATTCCGATCCAAATTCAA
CTCAAAAAGAGCTCACAGCAGACGGGTGCATCAAGAAATGCCGCAATAAT
TACATGACAGCATTACTGGATAGTAAGACGGAAGTACAAACTCAAGGGGC
TGACGTGTTCATCAAATGTTTCCCAGCCTGCTTCATTCCCAAAGATCATG
GTCAAATTACAGACCCAATCAAATGTAAGCTGTCTTGTGGAACCGCATTT
CATAATTGTTATTTGAAAGCTGAGAGCGTTGAATCTTTCACTTGTGTTGT
TGGAAAGGATGCATGCGAGGCTGATTGCGATTCCCTGAAAGAAAGAGACG
AGAAAGAAGATTCCCCGATTGATGTTTTAGATTCCCTAGAAAGGAAATAC
AATTCGCTGGCAAAATTGAATTCGGATAATGTATTTCTACAAAAGAAAAG
GATGGTCAGCAGTGCTGGAGGATCGAATAGATGCTTTAAGAAATGCACAT
GGACTTTTCGACATTGTGCAAAGTCGAATGCTGTTGCATCATACAAATTC
AACGTTTGTGACCGCCTACAGTCCCAATGTAATCGTCAGTGTTTCAAAGT
TTTGAGTTAAATGAAAATACAAGCGTTGTTCGTTACATCGATAAGTTTGT
TGCTGTTGGTTCGCCAAGCACCATGCAAACATATAACCTCAGTCTCTGAA
ATCGAAGATTTATTGTCCTTAGTGAAAAAAACAATCAAGTTGAAACAAAA
TGATGATTCCGATCCAAATTCAACTCAAAAAGAGCTCACAGCAGACGGGT
GCATCAAGAAATGCCGCAATAATTACATGACAGCATTACTGGATAGTAAG
ACGGAAGTACAAACTCAAGGGGCTGACGTGTTCATCAAATGTTTCCCAGC
CTGCTTCATTCCCAAAGATCATGGTCAAATTACAGACCCAATCAAATGTA
AGCTGTCTTGTGGAACCGCATTTCATAATTGTTATTTGAAAGCTGAGAGC
GTTGAATCTTTCACTTGTGTTGTTGGAAAGGATGCATGCGAGGCTGATTG
CGATTCCCTGAAAGAAAGAGACGAGAAAGAAGATTCCCCGATTGATGTTT
TAGATTCCCTAGAAAGGAAATACAATTCGCTGGCAAAATTGAATTCGGAT
AATGTATTTCTACAAAAGAAAAGGATGGTCAGCAGTGCTGGAGGATCGAA
TAGATGCTTTAAGAAATGCACATGGACTTTTCGACATTGTGCAAAGTCGA
ATGCTGTTGCATCATACAAATTCAACGTTTGTGACCGCCTACAGTCCCAA
TGTAATCGTCAGTGTTTCAAAGTTTTGAGTTAAATGAAAATACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018204-exon-sc0000291-1575043694:16684..16866 | TCONS_00018204-exon-sc0000291-1575043694:16684..16866 | Clytia hemisphaerica | exon |
| TCONS_00018204-exon-sc0000291-1575043694:14426..16192 | TCONS_00018204-exon-sc0000291-1575043694:14426..16192 | Clytia hemisphaerica | exon |
| TCONS_00018204-exon-sc0000291-1510915933:16684..16866 | TCONS_00018204-exon-sc0000291-1510915933:16684..16866 | Clytia hemisphaerica | exon |
| TCONS_00018204-exon-sc0000291-1510915933:14426..16192 | TCONS_00018204-exon-sc0000291-1510915933:14426..16192 | Clytia hemisphaerica | exon |
| TCONS_00018204-exon-sc0000291-1491911889:16684..16866 | TCONS_00018204-exon-sc0000291-1491911889:16684..16866 | Clytia hemisphaerica | exon |
| TCONS_00018204-exon-sc0000291-1491911889:14426..16192 | TCONS_00018204-exon-sc0000291-1491911889:14426..16192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000291 | supercontig | sc0000291:14426..16866 - |
Blast
The following BLAST results are available for this feature:
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