Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018202 ID=TCONS_00018202|Name=TCONS_00018202|organism=Clytia hemisphaerica|type=transcript|length=2882bpRun BLAST on NCBI protein sequence of TCONS_00018202-protein >TCONS_00018202-protein ID=TCONS_00018202-protein|Name=TCONS_00018202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp MFTSKARTAIQRFVLPKNNVGFSLTSLHRGYAQAAAATAPGGRDIVNYTVRun BLAST on NCBI transcript from alignment at sc0000291:337951..355150+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018202 ID=TCONS_00018202|Name=TCONS_00018202|organism=Clytia hemisphaerica|type=transcript|length=17200bp|location=Sequence derived from alignment at sc0000291:337951..355150+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000291:337951..355150+ >TCONS_00018202 ID=TCONS_00018202|Name=TCONS_00018202|organism=Clytia hemisphaerica|type=CDS|length=39321bp|location=Sequence derived from alignment at sc0000291:337951..355150+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018202 vs. Swiss-Prot (Human)
Match: ECHA (Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2) HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0 Identity = 407/731 (55.68%), Postives = 539/731 (73.73%), Query Frame = 2 Query: 452 RDIVNYTVENNVAVVTIDDPSAKVNTLSDKVMNETVDVLTEVTHNPNVKSVVLMSGKPDCFIAGADIKMLGKAESVADGTEISRSGQKILGMLADSKKPIVAAISGSCLGGGLEVALACQYRVALDNPKTGLGVPEVMLGLLPGAGGTQRLPQLVGLPTSLDMMXXXXXXXXXXXXXXXXXXXXXEELGVGVRTQKDNSLNHLRKVAIQTAQQLGDGKLRVNRDKSWASMKGLQHNAPMKIGPLRDFVFKKAEETVMKKTLGLYPAPLKILEAAKVGLEKGAEAGYEQEAKGFGELTQSNEANSLMGLFHGQVECKKNPFGVPSKRSQNIAVLGAGLMGAGIAEVSIQKAKHDVILKDTTVEGLSRGINQVYGNMNKRTKKRQMTTFERDNIMARMDSQLDYSGFENADMVIEAVFEDINIKHKVVKEVEAVTPDHCIFASNTSALPISEIAAASSRPENVIGMHYFSPVDKMPLLEIIVTDKTTKDVTANAVDVGLKQGKTVIVVKDGPGFYTTRILMPTLQEALCLLQEGYDPKDLDKRSKGFGFPVGCITLVDEVGIDVAAHIGAHLGQVFEKRMVGADFHLLQDMVDRGYCGRKTKKGFFKYS---GKREVNEGALEVIKKYQ-TAKVEGLTDEETALRLISRMVNESVLCLEEDILRNPVDGDIGAVXXXXXXXXXXXXXXXVDAYGAGNLVKLMEKYQQKIGEAQFTPCQLLLDHAKDSSKRFHK 2632 R +NY V+ +VAVV I+ P++KVNTLS ++ +E +V+ E+ + ++S VL+S KP CFIAGADI ML +++ + T++S+ Q+I+ L S KPIVAAI+GSCLGGGLEVA++CQYR+A + KT LG PEV+LG LPGAGGTQRLP++VG+P +LDMMLTG++I+A +AKK+GLVD++VE LG G++ ++ ++ +L +VAI A+ L D K+ RDK ++ L A M I +R V+KK EE V K+T GLYPAPLKI++ K G+E+G++AGY E++ FGEL + E+ +LMGL+HGQV CKKN FG P K +++A+LGAGLMGAGIA+VS+ K ILKD T+ L RG QV+ +N + KK+ +T+FERD+I + + QLDY GFE ADMVIEAVFED+++KH+V+KEVEAV PDHCIFASNTSALPISEIAA S RPE VIGMHYFSPVDKM LLEII T+KT+KD +A+AV VGLKQGK +IVVKDGPGFYTTR L P + E + +LQEG DPK LD + FGFPVG TLVDEVG+DVA H+ LG+VF +R G + LL MV +G+ GRK+ KGF+ Y ++++N ++ + K E +DE+ RL++R VNE+V+CL+E IL P +GDIGAVFGLGFPP GGPFRFVD YGA +V ++KY+ G+ QFTPCQLL DHA +K+F++ Sbjct: 38 RTHINYGVKGDVAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEPLGPGLKPPEERTIEYLEEVAITFAKGLADKKISPKRDKGL--VEKLTAYA-MTIPFVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLCESQKFGELVMTKESKALMGLYHGQVLCKKNKFGAPQKDVKHLAILGAGLMGAGIAQVSVDKG-LKTILKDATLTALDRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKEVEAVIPDHCIFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDSLTTSFGFPVGAATLVDEVGVDVAKHVAEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGFYIYQEGVKRKDLNSDMDSILASLKLPPKSEVSSDEDIQFRLVTRFVNEAVMCLQEGILATPAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKIVDRLKKYEAAYGK-QFTPCQLLADHANSPNKKFYQ 763 The following BLAST results are available for this feature:
BLAST of TCONS_00018202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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