TCONS_00018175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018175
Unique NameTCONS_00018175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018175 ID=TCONS_00018175|Name=TCONS_00018175|organism=Clytia hemisphaerica|type=transcript|length=218bp
AAGAGACTTTATTTTGCAGAAAATCCATGCATTGGGGGTTGGGAATCAAT
GCAGGACATTCGATTAACATGAGGGGTGAATAAGGGTACCGCGTTTTGTA
AATACTGTCattattttctaaatatttttgtagACAATTTTATATCAGTA
AATTTTATACCTAAAAGTTGaatacctttttttaattttcgagcAATATA
CCAATACATCAATGTTTa
Run BLAST on NCBI

transcript from alignment at sc0000290:80855..81072

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018175 ID=TCONS_00018175|Name=TCONS_00018175|organism=Clytia hemisphaerica|type=transcript|length=218bp|location=Sequence derived from alignment at sc0000290:80855..81072 (Clytia hemisphaerica)
tAAACATTGATGTATTGGTATATTgctcgaaaattaaaaaaaggtattCA
ACTTTTAGGTATAAAATTTACTGATATAAAATTGTctacaaaaatattta
gaaaataatGACAGTATTTACAAAACGCGGTACCCTTATTCACCCCTCAT
GTTAATCGAATGTCCTGCATTGATTCCCAACCCCCAATGCATGGATTTTC
TGCAAAATAAAGTCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010205XLOC_010205Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018175-exon-sc0000290-1491911889:80855..81072TCONS_00018175-exon-sc0000290-1491911889:80855..81072Clytia hemisphaericaexon
TCONS_00018175-exon-sc0000290-1510915933:80855..81072TCONS_00018175-exon-sc0000290-1510915933:80855..81072Clytia hemisphaericaexon
TCONS_00018175-exon-sc0000290-1575043694:80855..81072TCONS_00018175-exon-sc0000290-1575043694:80855..81072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:80855..81072 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	8.60456	2.71977	0	0	2.15071	3.99601	3.87862	2.54966	5.94093	6.16971	3.6231	3.11051	3.8319	1.96379	6.78269	2.83904	4.93528	7.22177	4.3895	2.66046	1.37011	1.22279	0	1.86744	2.83277	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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