TCONS_00018158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018158
Unique NameTCONS_00018158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018158 ID=TCONS_00018158|Name=TCONS_00018158|organism=Clytia hemisphaerica|type=transcript|length=233bp
atttagataaaaaataacaTGTTAAATCCAGATGTAATAATAAACTCTCA
ACCACTTGGCAGAAAGATCCTTGAATTGCATCCTGATTCAGGTCATGAGC
ACAAAAATCAAAAAGAGAAATGGTTTTTGATGAGTAACAATGAAACTGAA
AGTGACGAAATGGAAGAGGTAACTCACATTTTGTTCAAGTGTATTAATTT
TGtgtataaattttgataaaaagtaaTAGGAAC
Run BLAST on NCBI

transcript from alignment at sc0000290:349656..350296-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018158 ID=TCONS_00018158|Name=TCONS_00018158|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0000290:349656..350296- (Clytia hemisphaerica)
ATTTAGATAAAAAATAACATGTTAAATCCAGATGTAATAATAAACTCTCA
ACCACTTGGCAGAAAGATCCTTGAATTGCATCCTGATTCAGGTCATGAGC
ACAAAAATCAAGTAAGTCAACGGACCAGTATTAGATAATGATGTATTAAA
TTTCGATCATTGTTGATTACCTTACTTTCATTATATTCTCATTAAGGTTA
ACGTGATTTTAGAATTGCGTGATATCTCTGGAGATATTGCATTCTTGTGT
ACTAATGGGTCATACAAATTTGCCAGCGCTTCATAAACAAGCTTCTCTTA
TTTAGATTATGATATTTTGAATTTCAATCATTGTTGAGTTCTTCACTTTC
ATTATATTCTCGTTAAGGTTAACGTGGTTAAATTGCGTGATATCTCTGAG
GATATTGCATTCTTGTGTGGGTCGTAAAAATAAGATGAAAATAAGATAAA
AATATGAGAGGCTTGTCTATTCTGGTCTTAAAAATATTGGGTTCTCTCTT
TTTACTTCTATCATTTTAGAAAGAGAAATGGTTTTTGATGAGTAACAATG
AAACTGAAAGTGACGAAATGGAAGAGGTAACTCACATTTTGTTCAAGTGT
ATTAATTTTGTGTATAAATTTTGATAAAAAGTAATAGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010188XLOC_010188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018158-exon-sc0000290-1575043694:350186..350296TCONS_00018158-exon-sc0000290-1575043694:350186..350296Clytia hemisphaericaexon
TCONS_00018158-exon-sc0000290-1575043694:349656..349777TCONS_00018158-exon-sc0000290-1575043694:349656..349777Clytia hemisphaericaexon
TCONS_00018158-exon-sc0000290-1510915933:350186..350296TCONS_00018158-exon-sc0000290-1510915933:350186..350296Clytia hemisphaericaexon
TCONS_00018158-exon-sc0000290-1510915933:349656..349777TCONS_00018158-exon-sc0000290-1510915933:349656..349777Clytia hemisphaericaexon
TCONS_00018158-exon-sc0000290-1491911889:350186..350296TCONS_00018158-exon-sc0000290-1491911889:350186..350296Clytia hemisphaericaexon
TCONS_00018158-exon-sc0000290-1491911889:349656..349777TCONS_00018158-exon-sc0000290-1491911889:349656..349777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:349656..350296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.03335	5.88997	1.1398	7.80584	1.35755	0	0	0	6.78641	6.30455	12.2387	10.727	5.35604	9.73402	1.71486	4.29405	4.53422	2.32371	3.21034	1.1198	3.89322	4.2727	5.77114	6.29616	0	0	2.76069	1.47314	4.4693	2.27675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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