TCONS_00018131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018131
Unique NameTCONS_00018131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2873

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018131 ID=TCONS_00018131|Name=TCONS_00018131|organism=Clytia hemisphaerica|type=transcript|length=2873bp
NNGTACCGGCATGCGAATTCTTGAGCATGCGCTATAAAAGGGAGAGATTA
GTAGACGTGTCATCTCATTGCAACGCAAAGGTCGTGTACTTAAGATGGCG
TCAGAAGGAAGTGCTGCAGAACAGAATCAAAATCTTGCTGCTCAGCTACA
GACAGCAATCACTCAGTTAGTGGACTTTAGGCAACAAACTCAAGACACAT
TAAATGGTTTTAAAGAGTATCAAAAGTCATCAATAGCAAAATTTAACAAT
AGGCTtgagagaaagagaaaaatggATGATGTGCAGTTTAAAAACATTGG
AAACGAAGACCAGTACAACCATGAGAAGCGAGTGATGGAAAGCATGGACG
ATATCGAAGAATCATTGAACGAAAACAAATTAGAGGATGCAAAGAAGGCC
TTGAAGTCTGGTAAGGAAGCTATTGCATTCAGaatgaaattaattaaaat
tgcGGATAGAGAAGGTTGGGGATGCGTCAGACACTTCGTGTCTGATGACC
TAGTATCAGGGGACGAGGAAGAGAAACGGTTAAAGAAAGCTATCAAAGCT
AACTCGACTTCGAGAGACGCTAAGAAAACAAAATCTATTGCTTCATCATC
TAATAATCAAAACAGAGGCGAGTGTTCGAGTTATTCAAATCAATCTAACA
ATGTTTTTCACAGAAGAAAGATTGAGTCTATTCAATGCTATAACTGTAGA
TATTATGGACATTATTCTTATAATTGTCCATATCCATCCTCAAGGGACAA
CGTAAAAATTCCAAGAGCAGAAGAGAGTAAAGAGGAGGAAAATTAACAGT
ATAACGAGTCGTAAACGATTTAACGAGTttatcattttgaatatttgtgT
TATTTTATAATACTTTGTTAGAGCGACCACTGTGTCATGTACGTCGtgtt
atttttgaagataaccaTTTGCTATTCTATGATTTCAACTACCtccattt
tttctttcttccatTTGATTCAGAGAGATATTGGGAGCATGAGGAAACGG
AACAGGTCTCAGTTGCCGGAAAGATTCGAGAACAcgcaaaattttgggaa
ttcgAGTTAAAAGCACCGTCCTTCATCTTAGATATCGTCAAAAACGGGTA
CAGTTTGCCATTCAAAAAGAACCCTcccccatcttattccaaaaataata
AATCGAGTCTGAGAGAGcacaaatttgtcaaaaattcgaTCGAGGAGCTT
GTCAAAAACAAATGCATTCGTGAAGTCGATTTCATTCCTTATTGCGTCAA
CCCCCTTTCAGTAGcagaaagaaattcaaaattgagaCTTGTTCTAGATC
TTCGAAACGTTAACAAATATATTGACATTACAAAATTCAAATATGATAAC
ATAAAAACTTTGTCAGATCTAGTTAATCCTGGGGATTTAATGTTtacttt
tgatttaaaaagcGGCTATCATCACGTGCCAATTAATGAAGATTTTCATA
GATATCTTGGTttttcttgggaattcaaggGCATTACAAAATATTTCGTT
TTCGTGGTCCTTCCTTTCGGTTTGTGTTCAGCCTGTTGGGTTTTTACGAA
ATTAATGCGCCAGTTGGTTAAAAAATGGAGAGGCCAAGGTATGAAGTCGG
TTATGTATCTCGACGACGGAGTTGCTTGTGGTTACCCAGAGTCAATGATC
GTAAAACATCGGGACATAATGGCACATGACCTTAAGTCGGCTGGTCTGAC
AATAAACGTTAAGAAATCTTCATTAGAGCCTGAAACAGAAAAAGAGTGGT
TGGGTTTTAGAATCAAcacagaagagatgaaaattTATGTTCCCCTTCCA
AAATTGGAAGCTGTTCTACGTGTTATTGCCGAAATTCTGACATCCGATCT
AGTGACTAcaagaaaaatagcaaaattagcCGGGCGTATAATCGCCATGT
CTATAGCAATAGGACCCTTGACAAGACTTTTCACACGCAAAATGTATAAA
TTCATCGACGACAGGATTATGCTCGGCTTAGCCTGGGACAGTAATCGact
aatttcaaaagaattaaaatcagAACTCACTTTTTGGAAATCAAATCTAT
CTGCGTCAAATGGCGTGGAATTCAACACTTCTCCCGTGATTACGAAAGTA
TGTTATAGTGATGCTAGTGAATACGCATACGGTGGCTTCATCGTTGAAAG
ATTAGGTAACATAATCGCTCATGGAATTTTTCTATATCCGAATCAAATAC
GAGTTCAACTTACAGAGAGCTTCTTGCTGTTAAAAACGTTTTGACATCGt
ttgcaaaaaaagttaagaaaagatATGGTTCAGTGGAATTCTGACAATCA
AAACGTTACCAGAATAATCAATTCTGGAAGTACAAAAGATCATTTACAAA
GGCTAGCAATTGACATTTATGGTTTATGCGTTAAGAACAGTATTCGACTT
TATCCTCTTTGGATCCCTAGAGACCAAAACGAAATCGCtgatacaatttc
aaaaagcaTCGATACAGATAATTGGTGTATAGATAATGAGACATTTAATT
ATATCCAAAGCAACTACGGTACATTCACAATAGATAGATTTGCTGACAAT
AagaacacaaaaacaaaaagatttaatTCAAAGAGCTTTTGTCCAGACAC
TGAAGAAGTTAACGCTTTCGTAAGCCACTGGGGAAACGACTTTAATTGGC
TCTGTCCTCCTATTTATCTCATCGGAAAAACTATCAGTCATTTAAAATTG
TGCAAAGCAAAAGGAGTGTTATTCGTTCCAATGTGGAAATCTGCATATTT
TTGGCCATTACTGACCTCTGATGGTACACATTTTAATAACTTTGTaagac
attttttgcttttggatcctttcttttttaactATGCTAGAATTAAATCT
GTTTTTGAAGGTTTTGCAAAATT
Run BLAST on NCBI

transcript from alignment at sc0000290:359179..362051+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018131 ID=TCONS_00018131|Name=TCONS_00018131|organism=Clytia hemisphaerica|type=transcript|length=2873bp|location=Sequence derived from alignment at sc0000290:359179..362051+ (Clytia hemisphaerica)
NNGTACCGGCATGCGAATTCTTGAGCATGCGCTATAAAAGGGAGAGATTA
GTAGACGTGTCATCTCATTGCAACGCAAAGGTCGTGTACTTAAGATGGCG
TCAGAAGGAAGTGCTGCAGAACAGAATCAAAATCTTGCTGCTCAGCTACA
GACAGCAATCACTCAGTTAGTGGACTTTAGGCAACAAACTCAAGACACAT
TAAATGGTTTTAAAGAGTATCAAAAGTCATCAATAGCAAAATTTAACAAT
AGGCTtgagagaaagagaaaaatggATGATGTGCAGTTTAAAAACATTGG
AAACGAAGACCAGTACAACCATGAGAAGCGAGTGATGGAAAGCATGGACG
ATATCGAAGAATCATTGAACGAAAACAAATTAGAGGATGCAAAGAAGGCC
TTGAAGTCTGGTAAGGAAGCTATTGCATTCAGaatgaaattaattaaaat
tgcGGATAGAGAAGGTTGGGGATGCGTCAGACACTTCGTGTCTGATGACC
TAGTATCAGGGGACGAGGAAGAGAAACGGTTAAAGAAAGCTATCAAAGCT
AACTCGACTTCGAGAGACGCTAAGAAAACAAAATCTATTGCTTCATCATC
TAATAATCAAAACAGAGGCGAGTGTTCGAGTTATTCAAATCAATCTAACA
ATGTTTTTCACAGAAGAAAGATTGAGTCTATTCAATGCTATAACTGTAGA
TATTATGGACATTATTCTTATAATTGTCCATATCCATCCTCAAGGGACAA
CGTAAAAATTCCAAGAGCAGAAGAGAGTAAAGAGGAGGAAAATTAACAGT
ATAACGAGTCGTAAACGATTTAACGAGTttatcattttgaatatttgtgT
TATTTTATAATACTTTGTTAGAGCGACCACTGTGTCATGTACGTCGtgtt
atttttgaagataaccaTTTGCTATTCTATGATTTCAACTACCtccattt
tttctttcttccatTTGATTCAGAGAGATATTGGGAGCATGAGGAAACGG
AACAGGTCTCAGTTGCCGGAAAGATTCGAGAACAcgcaaaattttgggaa
ttcgAGTTAAAAGCACCGTCCTTCATCTTAGATATCGTCAAAAACGGGTA
CAGTTTGCCATTCAAAAAGAACCCTcccccatcttattccaaaaataata
AATCGAGTCTGAGAGAGcacaaatttgtcaaaaattcgaTCGAGGAGCTT
GTCAAAAACAAATGCATTCGTGAAGTCGATTTCATTCCTTATTGCGTCAA
CCCCCTTTCAGTAGcagaaagaaattcaaaattgagaCTTGTTCTAGATC
TTCGAAACGTTAACAAATATATTGACATTACAAAATTCAAATATGATAAC
ATAAAAACTTTGTCAGATCTAGTTAATCCTGGGGATTTAATGTTtacttt
tgatttaaaaagcGGCTATCATCACGTGCCAATTAATGAAGATTTTCATA
GATATCTTGGTttttcttgggaattcaaggGCATTACAAAATATTTCGTT
TTCGTGGTCCTTCCTTTCGGTTTGTGTTCAGCCTGTTGGGTTTTTACGAA
ATTAATGCGCCAGTTGGTTAAAAAATGGAGAGGCCAAGGTATGAAGTCGG
TTATGTATCTCGACGACGGAGTTGCTTGTGGTTACCCAGAGTCAATGATC
GTAAAACATCGGGACATAATGGCACATGACCTTAAGTCGGCTGGTCTGAC
AATAAACGTTAAGAAATCTTCATTAGAGCCTGAAACAGAAAAAGAGTGGT
TGGGTTTTAGAATCAAcacagaagagatgaaaattTATGTTCCCCTTCCA
AAATTGGAAGCTGTTCTACGTGTTATTGCCGAAATTCTGACATCCGATCT
AGTGACTAcaagaaaaatagcaaaattagcCGGGCGTATAATCGCCATGT
CTATAGCAATAGGACCCTTGACAAGACTTTTCACACGCAAAATGTATAAA
TTCATCGACGACAGGATTATGCTCGGCTTAGCCTGGGACAGTAATCGact
aatttcaaaagaattaaaatcagAACTCACTTTTTGGAAATCAAATCTAT
CTGCGTCAAATGGCGTGGAATTCAACACTTCTCCCGTGATTACGAAAGTA
TGTTATAGTGATGCTAGTGAATACGCATACGGTGGCTTCATCGTTGAAAG
ATTAGGTAACATAATCGCTCATGGAATTTTTCTATATCCGAATCAAATAC
GAGTTCAACTTACAGAGAGCTTCTTGCTGTTAAAAACGTTTTGACATCGt
ttgcaaaaaaagttaagaaaagatATGGTTCAGTGGAATTCTGACAATCA
AAACGTTACCAGAATAATCAATTCTGGAAGTACAAAAGATCATTTACAAA
GGCTAGCAATTGACATTTATGGTTTATGCGTTAAGAACAGTATTCGACTT
TATCCTCTTTGGATCCCTAGAGACCAAAACGAAATCGCtgatacaatttc
aaaaagcaTCGATACAGATAATTGGTGTATAGATAATGAGACATTTAATT
ATATCCAAAGCAACTACGGTACATTCACAATAGATAGATTTGCTGACAAT
AagaacacaaaaacaaaaagatttaatTCAAAGAGCTTTTGTCCAGACAC
TGAAGAAGTTAACGCTTTCGTAAGCCACTGGGGAAACGACTTTAATTGGC
TCTGTCCTCCTATTTATCTCATCGGAAAAACTATCAGTCATTTAAAATTG
TGCAAAGCAAAAGGAGTGTTATTCGTTCCAATGTGGAAATCTGCATATTT
TTGGCCATTACTGACCTCTGATGGTACACATTTTAATAACTTTGTaagac
attttttgcttttggatcctttcttttttaactATGCTAGAATTAAATCT
GTTTTTGAAGGTTTTGCAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010180XLOC_010180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018131-exon-sc0000290-1491911889:359179..362051TCONS_00018131-exon-sc0000290-1491911889:359179..362051Clytia hemisphaericaexon
TCONS_00018131-exon-sc0000290-1510915933:359179..362051TCONS_00018131-exon-sc0000290-1510915933:359179..362051Clytia hemisphaericaexon
TCONS_00018131-exon-sc0000290-1575043694:359179..362051TCONS_00018131-exon-sc0000290-1575043694:359179..362051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:359179..362051 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.22543	3.54283	1.54383	0.655264	0.0848293	0	0.0859259	0.193514	0.371133	0.295597	0.188893	0.124528	0.168538	0.0919811	0.461288	0.0975692	0.230914	0.31793	0.441283	0.133326	0.304095	0.266565	1.58137	1.48411	0	0	0.0862536	0	1.78912	1.25488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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