TCONS_00018091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018091
Unique NameTCONS_00018091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018091 ID=TCONS_00018091|Name=TCONS_00018091|organism=Clytia hemisphaerica|type=transcript|length=5318bp
CAATTTCGAGTTACATATAATAAATCTACCAAAAGAGACACTGATTTACT
TGAAAGCAGTTTAGAACGGAATCAATTTCGAGGGACATATACTAAATCTA
CCAAAAGAGACAATGATTTACTTGAAAGCAGTCTAGAACGGAATCAATTT
CGAGGGACATATACTAAATCCACCAAAAAAGACAATGATTTACTTGAAAG
CAGTCTAGAACCGAATCAATTTCGAGGAACATATACTAAATGCACCAAAA
AAGACAACGATTTACTTGAAAGCAGTCTAGAAAGGAATCAATTTCGAGGG
ACATATACTAAATCTGCGAATAAGGACTCTGATTTACTTGAAAGCAGTCT
AGAACGGAATCAATTTCGAGGGACATATACTAAATCTGCGAATAAGGACT
CTGATTTACTTGAAAGCAGTCTAGAACGGAATCAATTTCGAGGGACATAT
ACTAAATCTACAGGAACAAACTTTGAAAGAAATTCGAACTCAACAGGAAC
TtatgttaaagaaaaatttgaagccATATCCCCAATTCAAGACTCTTCAA
ACGTCTTAACATTCGAGCGTAATGCAAATGCCNCTGAAGCCATATCTTCA
ATTCAAGACTCTTCAAACGTCTTAACATTCGAGCGTAATGCAAATGTCTC
AGGGACTTATACGAAACAAAAAAGTGAGATCTCTCCAACACATTCTTCGA
AATTTGAACACAACACAAACACTTCTGTAACGTATGAGCAATCTCAGGAA
ATATCCCCAAAACACGAGAAAAGTACGGCATCAGCTACAAGCCCCTCTAA
ACGTAAAAGTCGTCCAGGAACTTATGTTTTGTCTGGTACAAATTCCCCTC
AGAACCTCTTAATTCAAAATTCACCTTCACATAAATCATCAGATCGCTCT
CAATCACCAGGAGAAAAGACAACTGATTCGCCACAAAAATCACCAATGTC
TACCAGGAGTCTATTTAAACGAACATCGAATCCAACATCTCCAACGAAAA
CAAAAGATGCAGAACACGAGATTCGATTAAATTCATCCGATTCACCAACA
TGCATTGATGTCAAATCACCAGCTGCATCACCAATACATCTCAATGGGAA
ACCTCCTTTACCACAATCAAATACTCCGTCAAAAAGACATTCAAACACTA
CAAATCCTCCAAAATCACCAGTCAGATCTCCTACCAACCATCCACTATCA
ACCTCCGAAAGGCTTTCAGATTCACCACAACGATCATCTCCTTCCTATTC
AACTTCACCAAGAGAATCACATCACCAAAGATCTTCATCAGATTCATCTT
CAACACACTGGTCACCTCCAATCAAAAACGCATTCATATTCTCACCAACC
AAACGAAGAACTCTTGAACGTTCCTCATCCACTAGTGAAGATAGCGTATC
ACCGACTAAATCAACTTCACCAGCAGATTCCAGATCACCACTCACCAAAT
CACAATCTTTATCAAACATCCAAATCCTCATAAACGAAGAACCACAATCA
CCTGATAAATCCAGACTGGCTGCATCACAACCTAACCTCTTCGCACTCAA
AGATATGCGTAAACGGTTAGGATCTAGCACATTCAGTAAACTCGGTATGC
TCAAAAAAGCAATGTCCACATCGTTAACCAAACTAACACAACTCCATGCT
GTCCAAAAAGAGATTTCCTTAAGTACAGAAACCTTAACAGATTTGGAATC
GGAACAAGATATAACCCTTACATCACCAGCTTCCTCGACATTCAACGAAA
GCGATATTGCCACAACCTCAAATGAGAATCTCTTAAACGCTTCAGAATCA
GACTCCAACATTACCAACTACAAAACTTTCTCACATGCTGACACATTGAA
ATCCATGAACACTATTGAATACGATATCGAAATTACAGATGATTTAGTAT
CCGACTTTAACGACGAACAATCTTCATCAAAACCAGTATCACTTCCAAGT
CAACCCGATCAAAATGTTGAGAAAATTACCAACAATAACGGAGTTGTATT
GCGTCAAAAGAAAGGTCGTTCAGCAGTGGACGAATCACATACATCAACTT
ATGTATTGACCAATCAACAGAAGCGAGGAACCTTCGTCATAGCTACAGGT
GAATCCTCGCCAAAACATACAATGACTGAAACATTGATTTATACTGATGA
CCCATCTTATACcaatgaaaacgaaagtgaaagtggaaGTGAAATACCCT
CAGATAGTATACAGAGAAATTCTCCGCTGAGACGCCGGACGACCGTTGAT
AAGAACCAAAAACCTCGAGTAACTGCTCGAATGTCAAATGAAGGATCGCC
TTCCGACCCATCAGGAGCTGGCTACCACCCTTCGGGACCTAGCTCTAAAT
CACCTGAATCGTCACCAAGAAGGAGTAAACGCCTCAATNCTTCGGGACCT
AGCTCTAAATCAACTGAATCGTCACCAAGAAGGGGTAGACGCCTCAATAA
ACAAACCACACCTGTTCATACTAAATTCTTGAGAAGGAAAAGCAACAAGG
TTTCAAGTCCTAACTTGAAATCGAAACGAGAAGAAGAAGGGGATGCTCCG
CTCAGTTCACGTTTAGCTGCGCTTCGTATGAAATTGGAAGAGAAACGACG
ACagtttgaagaagaaaagaaaaccaAACTGAAAGAATGGAACGAGGAGC
GAGCGCAAGCCTTGCAGAGCGCTTTCTTTGTTTCCAtggatgaaaaagaa
aacaaagaccCCGTCAATGCGGACGCTTCAGGAACCACTACACGACAAGA
AAGTACACATGGTAAGAAGTCTGACATCACTCCTCAAGACTACATCCGTC
AGAAACAATTAGAAAAGCAAAATTCACCCGGACAACAAACTGAAAAGAAA
TCCTGGTTCTTTGATATCAATGGCCAACAGCAGGACGTAGGAGAGATAAA
ACACACTCCAAATATCAGCGGTGAAGGGAACGCCCCAACCGCCCCTAACC
CACCTTTATCCTCTACAATCCCTGATGAGCAACCATCTATTCAATCAACA
GACCAGAAAGTAGCCTCTATCCGTACTTCATATCAAGGAGTAGAGCCTAG
TTTCTCACAAGTAAACCAATCTGCAGCACACATTAACCGGTCATCTTACA
ATGGTACAGAGGCTAACTTCAAGCTAGAAAGTAAGCCTACGCATCCGACC
AATCGAGCTTCATATCATGGACCAGAGTCTAGTTATCACAAAGAAACACA
AAATCTAACCAACGCCAACAGATCCTCCTACACTGAAGGAATGACACCAA
CTTTATCAGCACTTCAACGACTACAACAGACTACCAATGAACTTAGTACC
CATATCTCTCAAAATAGTTCATCAGCGTCAGAGCAAAGACAACAAACAGA
ACAGaACTCTAATCAAAAGATGGATACTATCGAGCCAACCACAACTTCAG
CATCAACAACAATGGAACCACCAAATATACCATCACAAGATGAAACGCCA
TCTGATATACAAAACACTCACATCTCAAATATACCAGAATCTCAACCCTT
GATTCAACAAGAACCCAAAACAGAAGATCCTGTAATTGAACAATCTCAAA
ACGAAATCCCTCTACCGCAAAGTGAGATCATGGTTATGCCTCAACAGACT
GAAACAGAGACCCTGAATGTGGACCCAGTACGGCCTATACCATTTTTAAA
AGAGCCAGTATCAAGTGAAATTGTCAATGATATTGCCAATGACGTGGGCA
ATCTTCAGATCCAAGATGCCATTAATGAAATTGCAAGTGAACAACCTGAA
CAATCGAGTCAACAAGTTGAACAAGGAACTGGAGAGGAGGAACATGGGTC
ATCGAGCCCAACCAAGAATTCAGCTCTTGTGTTCACTTTTGGTGGCGAAG
AAGAGACAGAGAGCGCGGGGATAACACCAGAGCAGATCAAGAAACGCGAA
CGATTTCTACAGAAACGTCAGAAACAGATAGaagagaaaaaattgaaacg
aGAAGCAGAGCTAGAAAAGAAACGAAAAAAAGACGAAGAAGCCCTTCAAG
AAAAATTACGAATGGATGAGGAAAAAGAACGCGTCAAAAAGGAGAAAATT
CGTCAGCGCGCTCAATCGGCAGAAAATCACGAGCGGGCGGCTCATCACCA
GGACAATCAACGACAATATTCGGCGTCCGCTTTCACTGTTAGTATGAATT
CAACGAGTTCAAGTCCCTCACATCAGCTACGACGTCCTCCAAGTAGCGAA
CATTTACGTCGTTTGCAAAGTGGAAGTCCGTCCCATCACGCAACCAACGG
TGATGGGACGCCGGACGAATCGAAATACTCGGAATACACGGGCCCTTCCG
CATACCAAAAACCGTCCGGGAAGTCGAATCGTAAAATTATCCAGAATGCG
ATAACATATTGTTGCTTATCGGGCGGTGTTAATCGTGATGCCAAAGATAG
ATGTCTGGAGGCGATTGAGAAGAGTGAAGCGCACCATTTCGTTGTCCTGT
TTCGAGATCCGATGAAATTTCGCGGTGTTTACGAATATTACCCTGAAAAT
GATTTGgtgACGAAAATTTATGGAACCGGACCAAAGTCAATCACGTCAAA
GATGACTGAGAAATTCTTTAGGTATAACAGCGGTGGGAAAGCCTTCAACG
GAATGTTGATGAAAGACCTTTCCATACAATGTGATGGATTCACCATCAAG
AAAGAACTATGGGAGAAAAAACCAACGGGCGGAACGCCCTCTAAAACACC
ATTACGGAAAAAAGTTCGTTGACTGAATCTGAGCAggaatgttgttgttg
ttattataaTAAGTCTTTAAAATTGAACCAACTGCGAACGTCAACTTGGG
TCTTCCCAATAAaagtgcaactttgataagtacTGTATTGAACTTTCGGA
GAATTGAACCAATAAATGaattctttatttatacaaaggTATAAACCCCT
CCTCTACAACATTTTAACACAAAGAGTATCCCAAAGAGTTCATCTGACGA
AACTGTGTTGCATTTTTCTCGTTTTTGATGTTCATTTTTTTGTCGTTGTC
aaatacttttaattttttttgtttgttttaactttgatattttgtcattt
tatacATATCACTACCAACATTTTAATATTTAGGTTTAccgaaaaaattg
acaaaaaatatatattggaTGATAGATAGTATTTATAAAGTGAAAAAGAG
AAGACATtgtaaataatgaaaaatgtaaatatttcttAGATATTTTATGG
TATTAGTAATATATCTTTATGAAAAATCAAGGTATTTCTAAAACACGAAA
ATGTTTACTTCTTACAAACCCGCTTGTTTCCTGTCTAAGATGAGTCGCAC
caaccattgagtttgaag
Run BLAST on NCBI

transcript from alignment at sc0000287:173194..186003+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018091 ID=TCONS_00018091|Name=TCONS_00018091|organism=Clytia hemisphaerica|type=transcript|length=12810bp|location=Sequence derived from alignment at sc0000287:173194..186003+ (Clytia hemisphaerica)
CAATTTCGAGTTACATATAATAAATCTACCAAAAGAGACACTGATTTACT
TGAAAGCAGTTTAGAACGGAATCAATTTCGAGGGACATATACTAAATCTA
CCAAAAGAGACAATGATTTACTTGAAAGCAGTCTAGAACGGAATCAATTT
CGAGGGACATATACTAAATCCACCAAAAAAGACAATGATTTACTTGAAAG
CAGTCTAGAACCGAATCAATTTCGAGGAACATATACTAAATGCACCAAAA
AAGACAACGATTTACTTGAAAGCAGTCTAGAAAGGAATCAATTTCGAGGG
ACATATACTAAATCTGCGAATAAGGACTCTGATTTACTTGAAAGCAGTCT
AGAACGGAATCAATTTCGAGGTACATATACTAAATGCACCAAAAAAGACA
ACGATTTACTTGAAAGCAGTCTAGAAAGGAATCAATTTCGAGGGACATAT
ACTAAATCTGCGAATAAGGACTCTGATTTACTTGAAAGCAGTCTAGAACG
GAATCAATTTCGAGGGACATATACTAAATCTACAGGAACAAACTTTGAAA
GAAATTCGAACTCAACAGGAACTtatgttaaagaaaaatttgaagccATA
TCCCCAATTCAAGACTCTTCAAACGTCTTAACATTCGAGCGTAATGCAAA
TGCCNCTGAAGCCATATCTTCAATTCAAGACTCTTCAAACGTCTTAACAT
TCGAGCGTAATGCAAATGTCTCAGGGACTTATACGAAACAAAAAAGTGAG
ATCTCTCCAACACATTCTTCGAAATTTGAACACAACACAAACACTTCTGT
AACGTATGAGCAATCTCAGGAAATATCCCCAAAACACGAGAAAAGTACGG
CATCAGCTACAAGCCCCTCTAAACGTAAAAGTCGTCCAGGAACTTATGTT
TTGTCTGGTACAAATTCCCCTCAGAACCTCTTAATTCAAAATTCACCTTC
ACATAAATCATCAGATCGCTCTCAATCACCAGGAGAAAAGACAACTGATT
CGCCACAAAAATCACCAATGTCTACCAGGAGTCTATTTAAACGAACATCG
AATCCAACATCTCCAACGAAAACAAAAGATGCAGAACACGAGATTCGATT
AAATTCATCCGATTCACCAACATGCATTGATGTCAAATCACCAGCTGCAT
CACCAATACATCTCAATGGGAAACCTCCTTTACCACAATCAAATACTCCG
TCAAAAAGACATTCAAACACTACAAATCCTCCAAAATCACCAGTCAGATC
TCCTACCAACCATCCACTATCAACCTCCGAAAGGCTTTCAGATTCACCAC
AACGATCATCTCCTTCCTATTCAACTTCACCAAGAGAATCACATCACCAA
AGATCTTCATCAGATTCATCTTCAACACACTGGTCACCTCCAATCAAAAA
CGCATTCATATTCTCACCAACCAAACGAAGAACTCTTGAACGTTCCTCAT
CCACTAGTGAAGATAGCGTATCACCGACTAAATCAACTTCACCAGCAGAT
TCCAGATCACCACTCACCAAATCACAATCTTTATCAAACATCCAAATCCT
CATAAACGAAGAACCACAATCACCTGATAAATCCAGACTGGCTGCATCAC
AACCTAACCTCTTCGCACTCAAAGATATGCGTAAACGGTTAGGATCTAGC
ACATTCAGTAAACTCGGTATGCTCAAAAAAGCAATGTCCACATCGTTAAC
CAAACTAACACAACTCCATGCTGTCCAAAAAGAGATTTCCTTAAGTACAG
AAACCTTAACAGATTTGGAATCGGAACAAGATATAACCCTTACATCACCA
GCTTCCTCGACATTCAACGAAAGCGATATTGCCACAACCTCAAATGAGAA
TCTCTTAAACGCTTCAGAATCAGACTCCAACATTACCAACTACAAAACTT
TCTCACATGCTGACACATTGAAATCCATGAACACTATTGAATACGATATC
GAAATTACAGATGATTTAGTATCCGACTTTAACGACGAACAATCTTCATC
AAAACCAGTATCACTTCCAAGTCAACCCGATCAAAATGTTGAGAAAATTA
CCAACAATAACGGAGTTGTATTGCGTCAAAAGAAAGGTCGTTCAGCAGTG
GACGAATCACATACATCAACTTATGTATTGACCAATCAACAGAAGCGAGG
AACCTTCGTCATAGCTACAGGTGAATCCTCGCCAAAACATACAATGACTG
AAACATTGATTTATACTGATGACCCATCTTATACcaatgaaaacgaaagt
gaaagtggaaGTGAAATACCCTCAGATAGTATACAGAGAAATTCTCCGCT
GAGACGCCGGACGACCGTTGATAAGAACCAAAAACCTCGAGTAACTGCTC
GAATGTCAAATGAAGGATCGCCTTCCGACCCATCAGGAGCTGGCTACCAC
CCTTCGGGACCTAGCTCTAAATCACCTGAATCGTCACCAAGAAGGAGTAA
ACGCCTCAATNCTTCGGGACCTAGCTCTAAATCAACTGAATCGTCACCAA
GAAGGGGTAGACGCCTCAATAAACAAACCACACCTGTTCATACTAAATTC
TTGAGAAGGAAAAGCAACAAGGTTTCAAGTCCTAACTTGAAATCGAAACG
AGAAGAAGGTATAGGTTCGTTACTTTAAGGgcgaaaagtcgcgaaatttc
gcgtatttaagtttcgcgatttttactttttgaagaaaatttacggaaga
aactttcgcggttttttgtaaatgttcaattttagtagcaataactttcg
cgagtggctagggaaagtgaataaaaaattatttaaatctttttcttcaa
tCGAAAGAGTGATATGCTAATAAATGAAAGATAAACTATTTGCACTTCTT
CCTCTCATTCCGAATCCTAGTCACTGCAATAATATCGATAATCTCGACTC
TCCTcggcttttaaaacttggaaaaaactttcgcgatttttaggaaaatt
tcatttttcgcgaaattaactttcgcgaatttcttgtttaatttcttacc
tggcataaactttcgcgaaaaaatgccaaaaacgcgaaaaacgcgtttct
gcccgcgaaagtttctgcccttaattTAATGACCGCTTTATTTTACTTAG
TAAGATCAGATTTTGGGAAGAGGCAGCAATGTTGTTGTTGCAGTGGAGTG
TCTTTAACtcgaatctccataactcgaacaagttttctcgtccatTCAGT
TAAAAATCCCTTCTAACTCAAAGAAAGAGTTTGGGAAGATTTGTTGTATA
AAAAGTTGTTTAATCCTAAttcattttcaggaaaaaagcaTATTGCTCTT
TTGTCTAAGTTTTTAACTTTACAACTTTtattttcttgtcatttttcagA
AGGGGATGCTCCGCTCAGTTCACGTTTAGCTGCGCTTCGTATGAAATTGG
AAGAGAAACGACGACagtttgaagaagaaaagaaaaccaAACTGAAAGAA
TGGAACGAGGTTAGTATTTTGTAGAtcaagtcttttttttttgtgaatgg
TTCCTCCggttaaatttttgaaatttttgaaagattcacTTGTCTAGTAC
GAAACCCTTTTTACCTTGCTTTTGGACAACTCACTCTTCAATTTGATCAC
CGTAGAActttaaacttaaaaataaatcgagctaaaattttaagCTATCC
GAAAACttgtttgttttctttcaaTGAAGATTGTCATCCtggatggcatg
aaactttgagtatgaaattaacttaaatcgTATTCTATACTTAAACTAGT
GACTTTCTCACTCAAAATGAACACCTTTTCTTTGTAGGAGCGAGCGCAAG
CCTTGCAGAGCGCTTTCTTTGTTTCCAtggatgaaaaagaaaacaaagac
cCCGTCAATGCGGACGCTTCAGGAACCACTACACGACAAGAAAGTACACA
TGGTAGGATTTTTCTGTCCACTCAGGTCCACCTGAAAAAATCTAATTACT
AATCTTCATGAAACAGGCAACCTTCGTGACTCTAGGTTTTTTGGAAGTCA
GTTATTTTCATTATCTGATAATCAATCAAGCAAACAATAGTTACCACAAT
TTTTTCTTGGGTTAATTAAAGTGCATCAATATCGTAAAATATCGTCATTA
TGCTTTCTTGGTTCACAACTTAgcttataaaaccaaaatacaGTAACATT
ATAGAgactttattaaaaagaattgaaaaactCGGAAGAGTCCTTAGCAt
aacttcttttctttttccttacTTCAAATTCACTTTCTTTTCTTCATCCA
CAACCAGGTAAGAAGTCTGACATCACTCCTCAAGACTACATCCGTCAGAA
ACAATTAGAAAAGCAAAATTCACCCGGACAACAAACTGAAAAGAAATCCT
GGTTCTTTGATATCAATGGCCAACAGCAGGACGTAGGAGAGATAAAACAC
ACTCCAAATATCAGCGGTGAAGGGAACGCCCCAACCGCCCCTAACCCACC
TTTATCCTCTACAATCCCTGATGAGCAACCATCTATTCAATCAACAGACC
AGAAAGTAGCCTCTATCCGTACTTCATATCAAGGAGTAGAGCCTAGTTTC
TCACAAGTAAACCAATCTGCAGCACACATTAACCGGTCATCTTACAATGG
TACAGAGGCTAACTTCAAGCTAGAAAGTAAGCCTACGCATCCGACCAATC
GAGCTTCATATCATGGACCAGAGTCTAGTTATCACAAAGAAACACAAAAT
CTAACCAACGCCAACAGATCCTCCTACACTGAAGGAATGACACCAACTTT
ATCAGCACTTCAACGACTACAACAGACTACCAATGAACTTAGTACCCATA
TCTCTCAAAATAGTTCATCAGCGTCAGAGCAAAGACAACAAACAGAACAG
GTAGGACTAAAGATTTAGTATTAATCTCTTTCGGCTGCCGGTGGGATTGA
ACACTATAATTTCTGATTTTCCATAGTACCGTATGTTCTTTTCGGTATTT
GATCTGTTTTCATAATACAGTTGAAATTGTCTAATTCGAAATTCAAGGGG
AATTTGATTTCAATCGAATGAGGGAGcgcatcgaatagtagagcgtcgtt
caTGAGAGTTTcatgttgacggggactttaaatttcatcgaataatggaA
CGTATttaatagtagaacgtcgaattagagagcgtcaactatatATGGAA
ATCTCAAACTTCATTGTTGTAGTAATCTAGTGATCAACGTGAAATCGAAG
TGAATTTCAACTCCCTCATGAAAAGTAGAAAGAATTTGTTTTTCGGTTTT
ATAGCTTTTTACCGGTTTCATTGTCCTTGCATTTTTGAGTTGATTTATAA
CTCTGTTTTGCTTATAGTCTTACCAAACCTGATTCTACTTTGTAACACAG
TTCCATTTAATTTGAACAAACACAGTTTGCCATATCTGAACTGTATTATA
GAAATCTTTCTCTTTCCTTTTTCTCCTTTACAAGACAGCTCTGTGTGACC
GCATAATCTTCTGCGTGTGTAAATTGTCGATTtgacaaagttttaaaatg
tatagtTGCTATATAGTTAACAATTATTTGAGTCGTGTCTGAATCGAAAA
TGTGATAGAGAAAATATAGATGGAGTGTTTCTTTCGTATTTTCTCTGCAA
TCACCAGCCGGAATTGAGAAAGTCTGATGTAATTCTGTTAATTGGTTGAT
GATGTTCATTACTTCCTCTCTCGTTGAATGATGATTGATGTAACTTCGTT
TGGTTCAGTATCAAAATTTCTATCATTGTAATTGAAACTTtgttgaaact
tttcaaaatttgttggTTAGTGAAAACGATGagtatttcgatttttgaag
cTTGTTTACGTTCACCAAATGGTAATCTGGCCTTCTTCGTAGACTCGGTA
AGCTTACGTTGTGATATGTTGTCTGTGCGAGAGAAATTTGTCAACACTAT
AAAGGTTGATTGTGTGATTCTCCAATTCTCACTTTTTCATCTCATAATAT
TGACTAGTTTTTTTTGCGACGGAAATTCAACGTTATCATACTACGTTTAA
AAGCTTAATATAAGATGTCATACATTCTTAGTGTAATCATAATGTTTTTA
CTGTTCCTGTATTTAAGGCTTGATCTGTTATAATAGAGCTGAGTGCAGTG
AGAAAAAATTGAGTTTGTTATCAAAATATAAGACAAGAGATTCCAGATTA
AACTTTTGCTTGCTtgaaaatattcgattaaaaatGTTGCAGTTCAGAGA
ATCTTACAATTCTTTATTCGTTTTGGGTCGTTTATAGTTATAGTTCTATA
GTTATAGTTAAGTTTTAGCAGCTTTTTTGAGAGGCATTTTAACGTCGTGG
TTTTATTTACGAATAAACTCtctaactttgaaaaattgttatttccgatt
tttgaatttaattccTTGAACGAAGTTTCTTTTCCTATCGACCAATCTGC
TAAATTAGTATCTACTCCTTTTTAATCTCTTTTCTATCTTGATCTTAGAA
GCCTGGTCTGAAAGTCTTAACAACTACAGCTTATTGAGTACTCCCAAGTT
GATTGATTTCATAATTATGGTAGAAACTGAAATTTGCGCACTCTTGAGAT
GAATTTTCGTCTCCTCTCAGAAATACTTTGGAGGAGATTAAACTCGAAGT
CGCTCTCCCTCGTGTAGGCCTCGTGTTCTCCATTTTCTGTGGTTGCTATT
GGAttatgtgtattttttaattatgatTTTATGATTAAGATTAATTACCT
CTGTTTTTTGTTGTATTGCTAGCATATGATTTGAATGCTGTGTTGTATTT
TCTTTTCGAATAAACTAAATCATAGATTATTTTACTGTGAATCTCTCGCT
AAAATCAATCCTTCTTTATCTGGAGCTACTTCTTAGTAACTGAAAAATGC
AAAACCTCTGCGTAAAATACTTTCTACAATATATATGAATCTGTACAATT
TTGGGTTaaaggtttttattttcacataagtgttcccgtttcatatcaga
cacatacttcatatcaggacagtgtctccctattgttatattgtgctgat
gttttttaaaaaaaatgtttttcttttcctctttttaaccaatcttgctc
cacatccatgtcaattcaatgcgaaaaagcttgtaaattagaattgatga
gtaagcaaacgatatcactcttatttaaaaacaaaacctttaaagctcAA
AGAGTCAATCTTCTAATACCACATCTCATAATCATATTTCGTAAATAAAT
TCAAGCAACCTAAAGCCTGGGAAGATCTATATGCGGTGTAGGCTACTTCT
ATACAAACTCCAAAGTATTGataattttttactttattttagaACTCTAA
TCAAAAGATGGATACTATCGAGCCAACCACAACTTCAGCATCAACAACAA
TGGAACCACCAAATATACCATCACAAGATGAAACGCCATCTGATATACAA
AACACTCACATCTCAAATATACCAGAATCTCAACCCTTGATTCAACAAGA
ACCCAAAACAGAAGATCCTGTAATTGAACAATCTCAAAACGAAATCCCTC
TACCGCAAAGTGAGATCATGGTTATGCCTCAACAGACTGAAACAGAGACC
CTGAATGTGGACCCAGTACGGCCTATACCATTTTTAAAAGAGCCAGTATC
AAGTGAAATTGTCAATGATATTGCCAATGACGTGGGCAATCTTCAGATCC
AAGATGCCATTAATGAAATTGCAAGTGAACAACCTGAACAATCGAGTCAA
CAAGTTGAACAAGGAACTGGAGAGGAGGAACATGGGTCATCGAGCCCAAC
CAAGAATTCAGCTCTTGTGTTCACTTTTGGTGGCGAAGAAGAGACAGAGA
GCGCGGTAAGAATCTTGAATAACTATATAATAAACATTTTGAATATTAAG
CAGCAGGGTCCTGCTGAAATTGAAAACGGTCACTCTGGTTCACTCTGGTT
CACTGACTCTTCAAGATTggtgttttttgaaattataatcCCACTACTCA
ATGtgggtgaaaaattttaaacggcaaatttcattgaattataAATTCAC
CCAATCGATTGGTGCTACTATTGGGGGGtttacttttacggtgtgacggg
attggcccttttttagtacggtattacgggatttgacgaaaaaaaaaacg
ggaaagcggtattttaaaatcagacggtgacggtatttggccttattttt
tgtcattttataacggtatttgaacctgtacaaaccggtgtgacggtgtt
attatttttcaattttcgggattccgggaaaCAGCAAatattttgacggg
aaaacggtatttcgaacccctactaCAAACCCCCTCCTATTGGGATACCA
CtctcaaaaaactccgatcaaagatggcggatatagcttggttcaGGGTA
TATAAAGGAGTTGTCTCTTGATACAGTGTTGTTGATGTATCCGGTGTTGT
TTATACCTCATTGGAAAGGTAGACTTTTGAGATGACACCATCTCAAGTAA
GTGTCTCACTCAAATATGAAATTCTTACTTGAATCTTTTTCAGATCCAAT
ATAATATTTGATGCTTTTATTATGCTAACTCTCAGTCATCCTAGTTTTCC
AACTGTTTTTTGATAGCATAAAATGTTAAACTTTTCATGCAATCTAAATA
ATTGATTATGTGATGTTATGCTTTTAAGTCTCTTGAAAGCCGAACGAAGG
TCGTAGGTATAGTCTATACACATTGCACTCCGTATTATCACATGTAGGGT
GCGCCAAAATAAGCATACAGACTTGTCAAGATATTGTATACGCTTATGGA
TAAGAATTTTCACAATTTCCACTGATATAGATGAATTTTATGTAGGTCAA
AATATTCAAGTCTAAAATTTATCTTTTGATTTTGTCTGAgtcgattttaa
aattttataaaccAAAATCTAAATTAGGCTTTCTCCTGTGCAATAAAAGA
AATCaacataaagtttttatcctTAAACTCACAATATCTTGATAAATTTG
TATATACTTATTTTTTACGCATTCGTATATTACTATATTACTATACTACA
TTCTAATCTCTGGTTCATTTTAAGGGGATAACACCAGAGCAGATCAAGAA
ACGCGAACGATTTCTACAGAAACGTCAGAAACAGATAGaagagaaaaaat
tgaaacgaGAAGCAGAGCTAGAAAAGAAACGAAAGTAAgttggaaatata
tttttgagtgAAAGGTATGGTTTTTAGGGCCTGTGAAAAATATCTGCTTT
GCTTAGTAAAActgtttatcaaaaaaacgACAGCCATTTTGAACGAGCGA
GTCTTGGGTTTGAATTCCATAAAGTAGCTTTGGAATAGCGTTAATTCCCC
CGTGTTTTCCAGTATTCATGTttttatgttgttgttttttcgtAAAAAAA
CGTCGTATGGAAATTTACTTGTGCAATTAACAAAGANGGATATTTTTGAG
TGAAAAGTACCCATTCTAGTACCCATTTAAAGATGTTAgcaatttttttc
aagatttaaagtctGTCCAAAATCATCTggataatatttttttacactca
tttttattttgttgttatttttactttattggaaagaaaaaatttttatt
taagacGTTAACGATTTTTGATTATAAAAATGGACGGACTTAACTTAAGC
aagatttcattattttttactACACTAAAATTTGCCTGTTTTAATTTTAC
AGAAAAGACGAAGAAGCCCTTCAAGAAAAATTACGAATGGATGAGGAAAA
AGAACGCGTCAAAAAGGAGAAAATTCGTCAGCGCGCTCAATCGGCAGAAA
ATCACGAGCGGGCGGCTCATCACCAGGACAATCAACGACAATATTCGGCG
TCCGCTTTCACTGTTAGTATGAATTCAACGAGTTCAAGTCCCTCACATCA
GCTACGGTACGTTTTTTGATATTCTATTTATAtgttgaattttaattttt
atcacTACAGTATTCAATATTGACTCTCCTGGtatgtacagttgacgctc
tctaattcgatcttcaagggaaatcagattttcatcgaataagggagcgt
cgtttatgagggtttcttgttgacggggactttaaatttcatcgaataag
gggtcctatcgaatagtagaccgtcgaattagagagcgtcaactggtATG
TCATTCCCCGATTTAAGGTATCCATGACGTAATGCATTCTATAAAAACAC
CCCGGTTTTTTGCCAGTagtgacaaaatgacaaaaaaaaatttttaatct
aCTGGCAGAAACTGGCGTGTTCCCGTAAAAAAGCATTATGTTATAAATAT
CATCAATGTGGGCAGTGTTTGACCCCATGGAGTAGTTTCATGGAATTTGA
ACAAAATCATGTTAAACTATCACGTATAAAGAGCCATTGAAAATCAACTA
AGTCAACTCTAGATTAATTCAAATGGAACTTTTTCTTTCAGACGTCCTCC
AAGTAGCGAACATTTACGTCGTTTGCAAAGTGGAAGTCCGTCCCATCACG
CAACCAACGGTGATGGGACGCCGGACGAATCGAAATACTCGGAATACACG
GGCCCTTCCGCATACCAAAAACCGTCCGGGAAGTCGAATCGTAAAATTAT
CCAGAATGCGATAACATATTGTTGCTTATCGGGCGGTGTTAATCGTGATG
CCAAAGATAGATGTCTGGAGGTATGAATTCCTTTTGTTTGTTTCAGACGG
ATTTCCCTCTCAGTGAAGTCTATAAAAAGGCTTTTCCGTCCCCAAACTCG
GCATGATTCACAAACATTTCAAGAACATatgctaatttgctgtgtaaaat
ccataTGCTTTGACCGCTGTTATTTATTCATTCGTCTATTTCAATGGAGC
GATATGGCGATgcggtcaaaggcgtcagcgttaCAAATCAGGTGTTTGCA
ATTCGAATCCCCGTctcttccaatgttccgttcagttcatagattgTTGA
ACCAGCTGGCTGTGGGCTccgtgaaaacaaacaaaagactGTCTAATAAT
CCTAGTTAGTGGGTATCCGCTTCAAAATATCGACTTTATCATAACCTAAC
AATTCTTGAGCCctgaaatataaataaatatgtATTTCAATTTTCCTTTG
TAGGCGATTGAGAAGAGTGAAGCGCACCATTTCGTTGTCCTGTTTCGAGA
TCCGATGAAATTTCGCGGTGTTTACGAATATTACCCTGAAAATGATTTGG
TATGTGATTATATTGCGTATAAGTTTTTATTACAGTTTTACATTCATTAA
CACCTTTAAATTTCGTCATTTGGATGACTAAACTTAATTGCCGTGGaaat
atttataattttataaccgggtaaaagacgggggtaaaatgtGAAAATGG
AAAGTGAGTTGATTCACTCAGAAACTTGAATTgtaggattttttattcaa
acGTCTGGTTGATGGTTGAGAAGGCTGAGAAACAAAAATTCCACATAAAG
GTTGAATTCTGTGTAATATTTAatgaaactttcatttttaggtgACGAAA
ATTTATGGAACCGGACCAAAGTCAATCACGTCAAAGATGACTGAGAAATT
CTTTAGGTATgatatttttaagatttctttTGGTTTTCTGGAGATTTTGA
GGGGGTTTTCCATTTAAACAAAGGAATGGGAAAAACTTAGTCACTGACCT
aaaaattttgtcacttttgCTCGACTAATTGTTACCCTTCAAGATATTTT
AGCGTTTGTTATACTACacgctttaaaaaaaaaagaatacacTCTATAAG
AATacccatgatgaaaatggccaaaaagaatatgctaagaatatcaacat
catggaattttgctactcaagtcAAGAATGCTATTCTTAgaccattttca
attataaattgtcaattacccccaagtaaggctcactcctttcacaaaaa
taccattttatgcttgagtcgtatgtactaaatattaaatctagtctaaa
ttaggatcctaacctaagaatattttaggatgattttccaaaaaaaaatt
aagaatatcaatgatgaaatggatttacaccattcttataaagaaaagcg
tatGTTATACTATCTGTGATTTTAACCATTTTCAttcaatcaattttctt
ttcatttcacCAGGTATAACAGCGGTGGGAAAGCCTTCAACGGAATGTTG
ATGAAAGACCTTTCCATACAATGTGATGGATTCACCATCAAGAAAGAACT
ATGGGAGAAAAAACCAACGGGCGGAACGCCCTCTAAAACACCATTACGGA
AAAAAGTTCGTTGACTGAATCTGAGCAggaatgttgttgttgttattata
aTAAGTCTTTAAAATTGAACCAACTGCGAACGTCAACTTGGGTCTTCCCA
ATAAaagtgcaactttgataagtacTGTATTGAACTTTCGGAGAATTGAA
CCAATAAATGaattctttatttatacaaaggTATAAACCCCTCCTCTACA
ACATTTTAACACAAAGAGTATCCCAAAGAGTTCATCTGACGAAACTGTGT
TGCATTTTTCTCGTTTTTGATGTTCATTTTTTTGTCGTTGTCaaatactt
ttaattttttttgtttgttttaactttgatattttgtcattttatacATA
TCACTACCAACATTTTAATATTTAGGTTTAccgaaaaaattgacaaaaaa
tatatattggaTGATAGATAGTATTTATAAAGTGAAAAAGAGAAGACATt
gtaaataatgaaaaatgtaaatatttcttAGATATTTTATGGTATTAGTA
ATATATCTTTATGAAAAATCAAGGTATTTCTAAAACACGAAAATGTTTAC
TTCTTACAAACCCGCTTGTTTCCTGTCTAAGATGAGTCGCACcaaccatt
gagtttgaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010146XLOC_010146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018091-exon-sc0000287-1491911889:173194..173563TCONS_00018091-exon-sc0000287-1491911889:173194..173563Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:173194..173563TCONS_00018091-exon-sc0000287-1510915933:173194..173563Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:173194..173563TCONS_00018091-exon-sc0000287-1575043694:173194..173563Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:173636..175801TCONS_00018091-exon-sc0000287-1491911889:173636..175801Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:173636..175801TCONS_00018091-exon-sc0000287-1510915933:173636..175801Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:173636..175801TCONS_00018091-exon-sc0000287-1575043694:173636..175801Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:176543..176652TCONS_00018091-exon-sc0000287-1491911889:176543..176652Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:176543..176652TCONS_00018091-exon-sc0000287-1510915933:176543..176652Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:176543..176652TCONS_00018091-exon-sc0000287-1575043694:176543..176652Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:176981..177095TCONS_00018091-exon-sc0000287-1491911889:176981..177095Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:176981..177095TCONS_00018091-exon-sc0000287-1510915933:176981..177095Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:176981..177095TCONS_00018091-exon-sc0000287-1575043694:176981..177095Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:177451..178043TCONS_00018091-exon-sc0000287-1491911889:177451..178043Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:177451..178043TCONS_00018091-exon-sc0000287-1510915933:177451..178043Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:177451..178043TCONS_00018091-exon-sc0000287-1575043694:177451..178043Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:180486..180998TCONS_00018091-exon-sc0000287-1491911889:180486..180998Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:180486..180998TCONS_00018091-exon-sc0000287-1510915933:180486..180998Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:180486..180998TCONS_00018091-exon-sc0000287-1575043694:180486..180998Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:182218..182327TCONS_00018091-exon-sc0000287-1491911889:182218..182327Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:182218..182327TCONS_00018091-exon-sc0000287-1510915933:182218..182327Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:182218..182327TCONS_00018091-exon-sc0000287-1575043694:182218..182327Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:182846..183049TCONS_00018091-exon-sc0000287-1491911889:182846..183049Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:182846..183049TCONS_00018091-exon-sc0000287-1510915933:182846..183049Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:182846..183049TCONS_00018091-exon-sc0000287-1575043694:182846..183049Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:183585..183813TCONS_00018091-exon-sc0000287-1491911889:183585..183813Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:183585..183813TCONS_00018091-exon-sc0000287-1510915933:183585..183813Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:183585..183813TCONS_00018091-exon-sc0000287-1575043694:183585..183813Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:184247..184342TCONS_00018091-exon-sc0000287-1491911889:184247..184342Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:184247..184342TCONS_00018091-exon-sc0000287-1510915933:184247..184342Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:184247..184342TCONS_00018091-exon-sc0000287-1575043694:184247..184342Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:184635..184699TCONS_00018091-exon-sc0000287-1491911889:184635..184699Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:184635..184699TCONS_00018091-exon-sc0000287-1510915933:184635..184699Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:184635..184699TCONS_00018091-exon-sc0000287-1575043694:184635..184699Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1491911889:185257..186003TCONS_00018091-exon-sc0000287-1491911889:185257..186003Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1510915933:185257..186003TCONS_00018091-exon-sc0000287-1510915933:185257..186003Clytia hemisphaericaexon
TCONS_00018091-exon-sc0000287-1575043694:185257..186003TCONS_00018091-exon-sc0000287-1575043694:185257..186003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:173194..186003 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128035	0.165256	0.193124	0	18.8615	13.4505	11.184	11.9072	3.59332	7.47752	4.8386	5.10445	4.65098	2.47394	0.484265	1.14332	2.56087	3.54349	6.52736	16.5076	3.13335	3.61974	0.195568	2.13359	2.93007	5.49986	4.91148	2.24643	3.21836	4.05053
Blast
[Close]
BLAST of TCONS_00018091 vs. Swiss-Prot (Human)
Match: CAMP1 (Calmodulin-regulated spectrin-associated protein 1 OS=Homo sapiens GN=CAMSAP1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.372e-34
Identity = 66/144 (45.83%), Postives = 95/144 (65.97%), Query Frame = 1 
Query: 4282 EYTGPSAYQKPSGKSNRKIIQNAITYCCLSGGVNRDAKDRCLEAIEKSEAHHFVVLFRDP-MKFRGVYEYYPENDLVTKIYGTGPKSITSKMTEKFFRYNSGGKAFNGMLMKDLSIQCDGFTIKKELWEKKPTGGTPSKTPLRK 4710
            EYTGP  +++PS KSN+ II NAI++CCL+G VN   K+  LE +EK +A+H+++LFRD   +FR +Y YYP+ + + K+ GTGPK+IT KM +K ++Y+S  K FN +  K +S+  D  TI   LW+ K     P K   RK
Sbjct: 1460 EYTGPKLFKEPSSKSNKPIIHNAISHCCLAGKVNEPHKNSILEELEKCDANHYIILFRDAGCQFRALYCYYPDTEEIYKLTGTGPKNITKKMIDKLYKYSSDRKQFNLIPAKTMSVSVDALTIHNHLWQPK-RPAVPKKAQTRK 1602
The following BLAST results are available for this feature:
BLAST of TCONS_00018091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAMP13.372e-3445.83Calmodulin-regulated spectrin-associated protein 1... [more]
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