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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018078 ID=TCONS_00018078|Name=TCONS_00018078|organism=Clytia hemisphaerica|type=transcript|length=2740bp
CAGCAATAGCCTGTTGTCGaaaatttgtttatatttatttcttcgttttt
cttgttgttttacaAGGCACCCTCAtctatttacaaattttctcgGCACC
TAAGAAGATATTGAAGACACCTATAAGAAGCACGTGTATCAACAAAGATG
AAGTTCAAGCACAGACGAAGGAGAACCAAACGAAGAAATGTAAACCTAAC
GCTGTAGCTAAACAAAGAAACTTAGCGTTCGTGTTTTACATCACTCGATC
GAAGCCAGAGTACGAATGTTACCTTTATGTCAACTTGCATATCTTACAAG
TCAAATATCAGCGTCTTTGTGAAGTGGATTTCGTTATCTTACATGATAAG
GGATACAGATTCAAAGAGACGTTACATCGATTCAAAAGAATACAACTTAT
CCCAGTCAAAAAGCACTCTTTGAAGCTGAGGAACCACGATGGTTATTTCT
CAGACTGTTTCATAAAGCTTGAAGTGTTTCGGTTATATGAACAATATGAC
CGAGTTGTCTTCACTGATGTAGATGGAGTCTTCTTTAAGGACCCGTACCC
ATTGCTTACAGAGAGCTTAAACCCTCACAATATTGGAGCATCATACTGCA
ATTGGTATTTCCCCAAAAAATGGTTAACATCAAGCATCTTTGTGGCAGAT
TTAAGTAAAAGTCTTAGCGATAGATTCCAATTCGCACTATCGAAGAATTT
GAATGATCTATATCGTAACAAGGAAAGTATCTTAGACATGGAGATATTTA
ATTGGGTTTTAAGAGAAGGTAAAGACGCTAAAATATACAATGATTTATTT
AACATGGATAGTCACTACATAGATAAAGATTATTCGCATTTTTACAACCA
GTCGAACGTTCCGTATTTCGTACATTTTAGTCACGTTAAACCGCACTTAT
ATCGTCGTTACTCATCCTGTCTGgacgaaaataaagaaaaagatgcGAAA
CCAGAGTTCTTTCAAGTTCATCGTATGTTTTGGAAATATTATTACCAATA
CTGTTAATAAGTTTGTTATACTTGTCCGGATTTACAAATATCTCATCACG
TGACCTTTTGTGCAAGGTTGATTTTCTTAGCCGTGCTTTGAAAGTCATAC
CAGCCAGCATTGAATAGATTACATTATATATCAGTTTCATCAATGATACA
TCGTACGGCGAGGCCATCGATTAGAGAAATACAGAAACGCACCATTTACA
ACTTTTAAAGCTCCCTTCCAACGGAGAAAATCAATGAAAGTTTTTACTTT
CCCTTAAATTGCCATTTAGGGAAGACactcaaacaaaaaataatgatgaG
TTCAAAAAGTGACATAATTGAAGCACCAATACAAAGTCCCAGCAACCCTC
CGAAATCATTAGCGACATCGGACAATACATAGGCTGGTTTTTCGGACACC
AGTTCAAACCCAAGCCTTGGGTAATAGAAGGAGAAAACAAACAACGATTC
CTTGAATTTCTGCTGATCACCAACATTTACGTCGTAATAATCTAACTGTT
GGAATATTTGTTTTTCATTCATCGGGACAGTATGGACACGTCGCGAGTAG
ATTACTTCTGAACAAGCGGATGGACAATCACAGATCTCGTTATTCGATAG
atcgaaattttgaaacaatgtaAAATAGCACGCATTGATATCGGCTACCG
TACGATTTTGCTTATACTTTTGGTACATCCAATCAGGGATTAGGCAGCGA
AAACGAGGCTGTAAAACATCACCGCATTCTTTTAAACCTTGTCGATTGTA
GCAAAGCTCTAAACAACTAGTGCGCGTGTAACTCCATCGTTTTGTAATAT
CCATGAAAGCATTGTCTGTGCGACAGTTAGATGGATATGGTTCAGGCAGC
cgcaaaaacattttcttggaTAACTCGATTCTGGTTTCAACACCAGGTGT
TAATTCGAGACGATCAAAATATATTGATGGGTATTCTCTGGCGAAATGGA
TAACAACTGagatagaattttcaataaaacccTGTTGCATGCGATCCGAT
GTTTCGTTGACGAAAAACATCATTCTAACACCAGAGTTCAGCCCTGGTAA
CTCCTGCTTGATCAGGCCATCCATATTCCATGTCACGCAAGGATCGTTCC
GACTGAAAGTCGAAAATTCTTCGGTAAAATTACAATGTCCCTTAAAACGA
GCGCAGAATGGTGGAAATTTAGATGCAAATTCATAAAATCCTTCGGAAAA
AGCTGTCGTCAAGTCTCCGGGTCCTTGTTCACCAGGAACATAATCAAATT
TGATTCGATTGTTACTACAAATTGTAATACTTGGTAATTCTAATTTATCA
TGGATTTGATCTTGGATATGAAGATTCACTTCTCGCGAACGGTACTTATG
CACCATGAGGTATAAACCATAACTCAATGCAAAGACACAAGAAATCACCA
AAGAAATCCAGAAATATCTTTCACTTCGTTTAGAATTGACTGCTTTGCTT
ACGCCATGAACTGTCACATTCTCAATATAGTTATCACGCTTATGGACAGT
TTCCTCTTTCCAAGCATTCTTAGCTTTGACCGCAGTCACGAATGGTAGAA
CTTTGTCTTTAAACATTTTGCCCATCTTAAGTCTTGATCAACCTTCCTGT
GAATAGACTTTGACAAGACAAGTCATCAAATTTCAACAGTTTCCAAATAA
ACTTGTTTCTCAAAAACACAGCTGTTCAAATTCTCAACGAAActttaaat
tatatttttgtatagtttttattcaaaatttataattggg Run BLAST on NCBI protein sequence of TCONS_00018078-protein >TCONS_00018078-protein ID=TCONS_00018078-protein|Name=TCONS_00018078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
MGKMFKDKVLPFVTAVKAKNAWKEETVHKRDNYIENVTVHGVSKAVNSKR
SERYFWISLVISCVFALSYGLYLMVHKYRSREVNLHIQDQIHDKLELPSI
TICSNNRIKFDYVPGEQGPGDLTTAFSEGFYEFASKFPPFCARFKGHCNF
TEEFSTFSRNDPCVTWNMDGLIKQELPGLNSGVRMMFFVNETSDRMQQGF
IENSISVVIHFAREYPSIYFDRLELTPGVETRIELSKKMFLRLPEPYPSN
CRTDNAFMDITKRWSYTRTSCLELCYNRQGLKECGDVLQPRFRCLIPDWM
YQKYKQNRTVADINACYFTLFQNFDLSNNEICDCPSACSEVIYSRRVHTV
PMNEKQIFQQLDYYDVNVGDQQKFKESLFVFSFYYPRLGFELVSEKPAYV
LSDVANDFGGLLGLCIGASIMSLFELIIIFCLSVFPKWQFKGK Run BLAST on NCBI transcript from alignment at sc0000284:164228..166967 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018078 ID=TCONS_00018078|Name=TCONS_00018078|organism=Clytia hemisphaerica|type=transcript|length=2740bp|location=Sequence derived from alignment at sc0000284:164228..166967 (Clytia hemisphaerica)
cccaattataaattttgaataaaaactatacaaaaatataatttaaagTT
TCGTTGAGAATTTGAACAGCTGTGTTTTTGAGAAACAAGTTTATTTGGAA
ACTGTTGAAATTTGATGACTTGTCTTGTCAAAGTCTATTCACAGGAAGGT
TGATCAAGACTTAAGATGGGCAAAATGTTTAAAGACAAAGTTCTACCATT
CGTGACTGCGGTCAAAGCTAAGAATGCTTGGAAAGAGGAAACTGTCCATA
AGCGTGATAACTATATTGAGAATGTGACAGTTCATGGCGTAAGCAAAGCA
GTCAATTCTAAACGAAGTGAAAGATATTTCTGGATTTCTTTGGTGATTTC
TTGTGTCTTTGCATTGAGTTATGGTTTATACCTCATGGTGCATAAGTACC
GTTCGCGAGAAGTGAATCTTCATATCCAAGATCAAATCCATGATAAATTA
GAATTACCAAGTATTACAATTTGTAGTAACAATCGAATCAAATTTGATTA
TGTTCCTGGTGAACAAGGACCCGGAGACTTGACGACAGCTTTTTCCGAAG
GATTTTATGAATTTGCATCTAAATTTCCACCATTCTGCGCTCGTTTTAAG
GGACATTGTAATTTTACCGAAGAATTTTCGACTTTCAGTCGGAACGATCC
TTGCGTGACATGGAATATGGATGGCCTGATCAAGCAGGAGTTACCAGGGC
TGAACTCTGGTGTTAGAATGATGTTTTTCGTCAACGAAACATCGGATCGC
ATGCAACAgggttttattgaaaattctatctCAGTTGTTATCCATTTCGC
CAGAGAATACCCATCAATATATTTTGATCGTCTCGAATTAACACCTGGTG
TTGAAACCAGAATCGAGTTAtccaagaaaatgtttttgcgGCTGCCTGAA
CCATATCCATCTAACTGTCGCACAGACAATGCTTTCATGGATATTACAAA
ACGATGGAGTTACACGCGCACTAGTTGTTTAGAGCTTTGCTACAATCGAC
AAGGTTTAAAAGAATGCGGTGATGTTTTACAGCCTCGTTTTCGCTGCCTA
ATCCCTGATTGGATGTACCAAAAGTATAAGCAAAATCGTACGGTAGCCGA
TATCAATGCGTGCTATTTtacattgtttcaaaatttcgatCTATCGAATA
ACGAGATCTGTGATTGTCCATCCGCTTGTTCAGAAGTAATCTACTCGCGA
CGTGTCCATACTGTCCCGATGAATGAAAAACAAATATTCCAACAGTTAGA
TTATTACGACGTAAATGTTGGTGATCAGCAGAAATTCAAGGAATCGTTGT
TTGTTTTCTCCTTCTATTACCCAAGGCTTGGGTTTGAACTGGTGTCCGAA
AAACCAGCCTATGTATTGTCCGATGTCGCTAATGATTTCGGAGGGTTGCT
GGGACTTTGTATTGGTGCTTCAATTATGTCACTTTTTGAACtcatcatta
ttttttgtttgagtGTCTTCCCTAAATGGCAATTTAAGGGAAAGTAAAAA
CTTTCATTGATTTTCTCCGTTGGAAGGGAGCTTTAAAAGTTGTAAATGGT
GCGTTTCTGTATTTCTCTAATCGATGGCCTCGCCGTACGATGTATCATTG
ATGAAACTGATATATAATGTAATCTATTCAATGCTGGCTGGTATGACTTT
CAAAGCACGGCTAAGAAAATCAACCTTGCACAAAAGGTCACGTGATGAGA
TATTTGTAAATCCGGACAAGTATAACAAACTTATTAACAGTATTGGTAAT
AATATTTCCAAAACATACGATGAACTTGAAAGAACTCTGGTTTCgcatct
ttttctttattttcgtcCAGACAGGATGAGTAACGACGATATAAGTGCGG
TTTAACGTGACTAAAATGTACGAAATACGGAACGTTCGACTGGTTGTAAA
AATGCGAATAATCTTTATCTATGTAGTGACTATCCATGTTAAATAAATCA
TTGTATATTTTAGCGTCTTTACCTTCTCTTAAAACCCAATTAAATATCTC
CATGTCTAAGATACTTTCCTTGTTACGATATAGATCATTCAAATTCTTCG
ATAGTGCGAATTGGAATCTATCGCTAAGACTTTTACTTAAATCTGCCACA
AAGATGCTTGATGTTAACCATTTTTTGGGGAAATACCAATTGCAGTATGA
TGCTCCAATATTGTGAGGGTTTAAGCTCTCTGTAAGCAATGGGTACGGGT
CCTTAAAGAAGACTCCATCTACATCAGTGAAGACAACTCGGTCATATTGT
TCATATAACCGAAACACTTCAAGCTTTATGAAACAGTCTGAGAAATAACC
ATCGTGGTTCCTCAGCTTCAAAGAGTGCTTTTTGACTGGGATAAGTTGTA
TTCTTTTGAATCGATGTAACGTCTCTTTGAATCTGTATCCCTTATCATGT
AAGATAACGAAATCCACTTCACAAAGACGCTGATATTTGACTTGTAAGAT
ATGCAAGTTGACATAAAGGTAACATTCGTACTCTGGCTTCGATCGAGTGA
TGTAAAACACGAACGCTAAGTTTCTTTGTTTAGCTACAGCGTTAGGTTTA
CATTTCTTCGTTTGGTTCTCCTTCGTCTGTGCTTGAACTTCATCTTTGTT
GATACACGTGCTTCTTATAGGTGTCTTCAATATCTTCTTAGGTGCcgaga
aaatttgtaaatagaTGAGGGTGCCTtgtaaaacaacaagaaaaacgaag
aaataaatataaacaaattttCGACAACAGGCTATTGCTG Coding sequence (CDS) from alignment at sc0000284:164228..166967 >TCONS_00018078 ID=TCONS_00018078|Name=TCONS_00018078|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000284:164228..166967 (Clytia hemisphaerica)
ATGGGCAAAATGTTTAAAGACAAAGTTCTACCATTCGTGACTGCGGTCAA
AGCTAAGAATGCTTGGAAAGAGGAAACTGTCCATAAGCGTGATAACTATA
TTGAGAATGTGACAGTTCATGGCGTAAGCAAAGCAGTCAATTCTAAACGA
AGTGAAAGATATTTCTGGATTTCTTTGGTGATTTCTTGTGTCTTTGCATT
GAGTTATGGTTTATACCTCATGGTGCATAAGTACCGTTCGCGAGAAGTGA
ATCTTCATATCCAAGATCAAATCCATGATAAATTAGAATTACCAAGTATT
ACAATTTGTAGTAACAATCGAATCAAATTTGATTATGTTCCTGGTGAACA
AGGACCCGGAGACTTGACGACAGCTTTTTCCGAAGGATTTTATGAATTTG
CATCTAAATTTCCACCATTCTGCGCTCGTTTTAAGGGACATTGTAATTTT
ACCGAAGAATTTTCGACTTTCAGTCGGAACGATCCTTGCGTGACATGGAA
TATGGATGGCCTGATCAAGCAGGAGTTACCAGGGCTGAACTCTGGTGTTA
GAATGATGTTTTTCGTCAACGAAACATCGGATCGCATGCAACAgggtttt
attgaaaattctatctCAGTTGTTATCCATTTCGCCAGAGAATACCCATC
AATATATTTTGATCGTCTCGAATTAACACCTGGTGTTGAAACCAGAATCG
AGTTAtccaagaaaatgtttttgcgGCTGCCTGAACCATATCCATCTAAC
TGTCGCACAGACAATGCTTTCATGGATATTACAAAACGATGGAGTTACAC
GCGCACTAGTTGTTTAGAGCTTTGCTACAATCGACAAGGTTTAAAAGAAT
GCGGTGATGTTTTACAGCCTCGTTTTCGCTGCCTAATCCCTGATTGGATG
TACCAAAAGTATAAGCAAAATCGTACGGTAGCCGATATCAATGCGTGCTA
TTTtacattgtttcaaaatttcgatCTATCGAATAACGAGATCTGTGATT
GTCCATCCGCTTGTTCAGAAGTAATCTACTCGCGACGTGTCCATACTGTC
CCGATGAATGAAAAACAAATATTCCAACAGTTAGATTATTACGACGTAAA
TGTTGGTGATCAGCAGAAATTCAAGGAATCGTTGTTTGTTTTCTCCTTCT
ATTACCCAAGGCTTGGGTTTGAACTGGTGTCCGAAAAACCAGCCTATGTA
TTGTCCGATGTCGCTAATGATTTCGGAGGGTTGCTGGGACTTTGTATTGG
TGCTTCAATTATGTCACTTTTTGAACtcatcattattttttgtttgagtG
TCTTCCCTAAATGGCAATTTAAGGGAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018078-exon-sc0000284-1491911889:164228..166967 | TCONS_00018078-exon-sc0000284-1491911889:164228..166967 | Clytia hemisphaerica | exon |
| TCONS_00018078-exon-sc0000284-1510915933:164228..166967 | TCONS_00018078-exon-sc0000284-1510915933:164228..166967 | Clytia hemisphaerica | exon |
| TCONS_00018078-exon-sc0000284-1575043694:164228..166967 | TCONS_00018078-exon-sc0000284-1575043694:164228..166967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000284 | supercontig | sc0000284:164228..166967 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
BLAST of TCONS_00018078 vs. Swiss-Prot (Human)
Match: ASIC5 (Acid-sensing ion channel 5 OS=Homo sapiens GN=ASIC5 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.299e-18 Identity = 98/447 (21.92%), Postives = 181/447 (40.49%), Query Frame = -1
Query: 1295 NVTVHGVSKAV-NSKRSERYFWISLVISCVFALSYGLYLMVHKYRSREVNLHIQDQIHDKLELPSITICSNNRIKFDYVP--------------------------GEQGPGDLTTAF----------SEGFYEFASKFPPFCARFKGHCNFTEEFSTFSRNDPCVTWNMDGLI--KQELPGLNSGVRMMFFVNET--SDRMQQGFIENSISVVIHFAREYPSIYFDRLELTPGVETRIELSKKMFLRLPEPYP-SNCRTDNAFMDITKRWSYTRTSCLELCYNRQGLKECGDV------------LQPRFRCLIPDWMYQKYKQNRTVADINACYFTLFQNFDLSNNEICDCPSACSEVIYSRRVHTVPMNEKQIFQQLDYYDVNVGDQQKF-KESLFVFSFYYPRLGFELVSEKPAYVLSDVANDFGGLLGLCIGASIMSLFELI 2470
+ + HG+ V N + R W+ +V+ V +++ +Y+ + Y + I+ Q +K+E P++T C+ NR + D V G + D + ++GFY S C F C+ + F+ C T+N + K+++ G+ ++F VN+ +D GF++ I VIH ++ P FD L L V ++ + + + YP C + + + SY+ + CL+ C + K+CG V LQ F C+ P + ++K TV N+ CP +C E+ Y + ++ L Y + +K+ +E+L Y L +++ ++ A +S++ D GG LGL GAS++++ E+I
Sbjct: 44 STSFHGIHNIVQNRSKIRRVLWLVVVLGSVSLVTWQIYIRLLNYFTWPTTTSIEVQYVEKMEFPAVTFCNLNRFQTDAVAKFGVIFFLWHIVSKVLHLQEITANSTGSREATDFAASHQNFSIVEFIRNKGFYLNNSTLLD-CEFFGKPCSPKDFAHVFTEYGNCFTFNHGETLQAKRKVSVSGRGLSLLFNVNQEAFTDNPALGFVDAGIIFVIHSPKKVPQ--FDGLGLLSPVGMHARVTIRQVKTVHQEYPWGECNPNIKLQNFS---SYSTSGCLKECKAQHIKKQCGCVPFLLPGYGIECDLQKYFSCVSPVLDHIEFKDLCTVGTHNS-----------------SCPVSCEEIEYPATISYSSFPSQK---ALKYLSKKLNQSRKYIRENLVKIEINYSDLNYKITQQQKAVSVSELLADLGGQLGLFCGASLITIIEII 464
The following BLAST results are available for this feature:
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