TCONS_00018076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018076
Unique NameTCONS_00018076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018076 ID=TCONS_00018076|Name=TCONS_00018076|organism=Clytia hemisphaerica|type=transcript|length=437bp
cgaaaattaaaaatgaggtCACTGATCATTACAATCAAGTTAAAAGAATA
TAGACTGTAACTTCGAtggtctttcttttctttctgggCGTTCTTTTCAT
TCTCTCACGCACACGCACCACTGTTTCAATgccgccccggtggagctttt
tcctgcagtgtggatgaaaatttcaccggATCTCTGACACATAGGTATTC
TCCAGAAGGTTTCCAGATTCTTGCCTTCGCCAACAAATGTCTTTCATTAT
GATATTACGACAgtggaaaatgtggaaaatactCGTCTCATCTGGATAAA
TGATATTGCAATTGTGTTcccataaaaaataaaaatgactgAAATGAAAA
TAGCACGAAAGAATTGTTGTGATTCATCCAATCTAGACCACTGGAGACCT
AGTAATAAGCATGGAGTGGCAAGATCAGGGTTCTGAA
Run BLAST on NCBI

transcript from alignment at sc0000284:104485..104921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018076 ID=TCONS_00018076|Name=TCONS_00018076|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at sc0000284:104485..104921 (Clytia hemisphaerica)
TTCAGAACCCTGATCTTGCCACTCCATGCTTATTACTAGGTCTCCAGTGG
TCTAGATTGGATGAATCACAACAATTCTTTCGTGCTATTTTCATTTcagt
catttttattttttatgggAACACAATTGCAATATCATTTATCCAGATGA
GACGagtattttccacattttccacTGTCGTAATATCATAATGAAAGACA
TTTGTTGGCGAAGGCAAGAATCTGGAAACCTTCTGGAGAATACCTATGTG
TCAGAGATccggtgaaattttcatccacactgcaggaaaaagctccaccg
gggcggcATTGAAACAGTGGTGCGTGTGCGTGAGAGAATGAAAAGAACGc
ccagaaagaaaagaaagaccaTCGAAGTTACAGTCTATATTCTTTTAACT
TGATTGTAATGATCAGTGacctcatttttaattttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010134XLOC_010134Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018076-exon-sc0000284-1491911889:104485..104921TCONS_00018076-exon-sc0000284-1491911889:104485..104921Clytia hemisphaericaexon
TCONS_00018076-exon-sc0000284-1510915933:104485..104921TCONS_00018076-exon-sc0000284-1510915933:104485..104921Clytia hemisphaericaexon
TCONS_00018076-exon-sc0000284-1575043694:104485..104921TCONS_00018076-exon-sc0000284-1575043694:104485..104921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:104485..104921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.266679	0.521443	0	1.02673	0.249675	0.903496	0.723035	2.67131	0.769099	0.407766	0.854627	0.24322	0.85588	0	0.150689	0	0	0	0.236901	0	0	0.229171	0.175926	0	0.51799	0.230579	0.25542	0.187742	0.640506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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