TCONS_00018063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018063
Unique NameTCONS_00018063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1986

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018063 ID=TCONS_00018063|Name=TCONS_00018063|organism=Clytia hemisphaerica|type=transcript|length=1986bp
agaaccTTTTCAggcctaaaattcaaaaagttaacaacATTGGGagggct
ttaaaaattttggatgttcttataaagaaacttTTAAGATCAATGGCAAA
GCTTTGTTATAAAACTTAATCAAAATTTCACGTCCTTTGGACAAcgagag
aagaaaaaaacatataaaaatgttaaaacattGACTGGAGTTTCAGTTgt
aaaaaaagacattgaaGAGAAAAGATGAGGCGAAAAATGGGCTTCGGCCT
GCTTTTATGGCTCTTCGTCCTTGTGACCGACGTCACAGGAGCCAATCAGC
CACCACGTGTTTACGAGGCAGCACAATGTTATACAGATCATActaattca
aattattttcacaCTTACAAACATAAAGACTTAAATGGTAATGaagttca
ttttcaaaaatacaaaggcaAGGTTTCCCTCGTTGTAAACGTAGCCTCGT
TTTGAGCTTTAACAAATGCTACATACACTGAATTAAATGTACTTGTTTCC
AAATATGGACCAAATTCAATGTATGACCAAAATGGTAGGAAGACTAACAA
ATGTTCACTTCAAGTTTTGGGATTTCCTTCAAATCAGTTCTATAGACAGG
AGCCAGCCAAAGAGCATGAAATCATGAATTGTCTTCGGTACGTGAGACCA
GGGAAAGGTTACATACCCAAATTTGAGCTGTTCTCAAAAGTTGATGTCAA
TGGGGAAGATGCTATTGGCTTGTACAAATGGCTCAAATACATGTGTCCAC
GACCAACACAGAAGATCTCTTTCACCAAATATGTTCCTTGGACCCCAATC
ATGACCACCGATATTGAATGGAATTTTGAAGAATTCCTATTGGACCATAA
GGGTCGACCAATCAGAAGATTCTCAGCTGATACGTTACCGTTGGAATATG
AAAATGATATCAAAAGGGCGATTGACGCATGTAAAAAGGATTCGATGTAA
GATAACTTAACTGGTAATAGAAAGGAGACTTTTCAAGGGGTTATTGTGGG
TTGTTTTAAAGAACCAATGCATAGTAGATCAGTTTTATGCTTTGAAAACG
AAATCAAAATGGACAGCTTCGAGCTTGTCTGATATTATGTAAGATGAAAC
AAGAACAAGTTTAGAATCAAAACAATCTAgtgtaaaatctatttttataa
aGTTGACGTGTTATAATACTCGCGAAAGGAATGCGAAGCAGTATTTTGAT
CAAAAACACAACACCTAGAGAAGCAGTTTTAGtgttgttttaaaaatgac
GCAATCTTATTGGTTTACGCTTTAGCTAATTGACAAGATTAGCCATTGTC
ACACTGAAAGAGTGGAAAAGGGGGAGCGAAAAGTCTTGCATTTCTATTCA
AAGAGCTTATAGtgatcgattttttttttcataaacagAGTGTCATATGA
ACTCTTTTGACTTAAGATTCTAAATTCACAAATGCTCGATGAATTTAGCG
AATCCACAAAGCAGAACCAAGCAAGTAGaataattttaaatcttaaTTCT
ATTAGGGAAAATTAAAAGTTAAACCTTCGttttaaatttctcatttttat
tttctaaggaaaattttaatgaaCAGAATACGGTAGACTTTGACTTAGAA
TTTTAAATCTTGTAATTatgtaacattttttattttagcaaaaatatttA
GTTTCATAATATGATTGTTATTTTCATGGATAAAACATATGACGGTAATA
GCTTGACTCGATGAATCATTCGAAGGCTATTATCTGACGATCTCGATTAG
TTAGAAATTTTTTGTACATTTAATTTTTCTGATGAAagagatcttatttt
tttcagaatttttaacAAGAATATGATGTATACTAATTTAAGacatagaa
aaaagaaaatgaataaactacagataaaatattttgtaatttcaatttaa
ttcatAAGTCCGTCCGTTATCCCTACTCGAATTCTATTCACCGAGAATGG
TTTCACCCGGTATTTTCAACTCTAGATAGACTTTGA
Run BLAST on NCBI

protein sequence of TCONS_00018063-protein

>TCONS_00018063-protein ID=TCONS_00018063-protein|Name=TCONS_00018063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MYDQNGRKTNKCSLQVLGFPSNQFYRQEPAKEHEIMNCLRYVRPGKGYIP
KFELFSKVDVNGEDAIGLYKWLKYMCPRPTQKISFTKYVPWTPIMTTDIE
WNFEEFLLDHKGRPIRRFSADTLPLEYENDIKRAIDACKKDSM
Run BLAST on NCBI

transcript from alignment at sc0000284:190085..193779-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018063 ID=TCONS_00018063|Name=TCONS_00018063|organism=Clytia hemisphaerica|type=transcript|length=3695bp|location=Sequence derived from alignment at sc0000284:190085..193779- (Clytia hemisphaerica)
AGAACCTTTTCAGGCCTAAAATTCAAAAAGTTAACAACATTGGGAGGGCT
TTAAAAATTTTGGATGTTCTTATAAAGAAACTTTTAAGATCAATGGCAAA
GCTTTGTTATAAAACTTAATCAAAATTTCACGTCCTTTGGACAACGAGAG
AAGAAAAAAACATATAAAAATGTTAAAACATTGACTGGAGTTTCAGTTGT
AAAAAAAGACATTGAAGAGAAAAGATGAGGCGAAAAATGGGCTTCGGCCT
GCTTTTATGGCTCTTCGTCCTTGTGACCGACGTCACAGGAGCCAATCAGC
CACCACGTGTTTACGAGGCAGCACAATGTTATACAGATCATACTAATTCA
AATTATTTTCACACTTACAAACATAAAGACTTAAATGGTAATGAAGTTCA
TTTTCAAAAATACAAAGGCAAGGTTTCCCTCGTTGTAAACGTAGCCTCGT
TTTGAGCTTTAACAAATGCTACATACACTGAATTAAATGTACTTGTTTCC
AAATATGGACCAAATTCAATGTATGACCAAAATGGTAGGAAGACTAACAA
ATGTTCACTTCAAGTTTTGGGATTTCCTTCAAATCAGGTAAGCATTTTTT
AAATACCGTATGAGCAGTAGCGCAGACAGGTGTGAAGGAGTATTTGCTTA
GGAGAGCAGATTTAAACGACACGGTTATTATGTTTTATACCACGAATAGG
TAAGTACTTTATCATAAAAATCTGCTCTCCTACGCAGATCGATCTTCATC
CCTGTCTACCCTACCGTATGAGCATGACAATCTATCAGGAGGTAATGGCC
AATAGGCCTAAGGCTTCAATGCTACAAACTGGGGTCTGTGGTTCGAATCC
CTCTCGTTCTTTCAAGTATTTCGTTCAGCTCAGAGATAGCTGAGCTAGCA
GAGCCATTTTTCGAATTATGTGCTATTTTTTGAGCAAATCGCAAGGTTGA
TAGAAGTAAACAACCTTACATCATTGAAGTGGACATTATTCAAACATGAT
TTTAGATGCATAGTTTGCCAGTCCCGGTATGGCTGCAATTGCCGGTACAA
TACAGTTTCGTCTTATTTTTACCCACTTCACCCAGGGTGTCCCGAAAATA
GTCCTGTGTCAGACTACTTTCATTACAGTTGCGTCTAAAAAATATACTTT
GTAAACACAAATTCTTTTCTTCTTACACAAGTGGTATGACATAGGGCACC
TTGTATATAATCAATAATGGGCTCTTCCAGAAAAAATCCGTTCATGGGGG
GTGGAGGATATATTATTTTTTTCATGCATTACCCCTGGACATTTTGATTT
TTAACCCCCTGGACACGGGTTATACCCCTGGACAAACATCAAATCAACCC
CGTGGACACAAAAAATTACCCCTGGACATTGGAATTTACCCCCTGGACAT
TGCAAATTTTTGGTATTTTTTCAATACCCCTGGACAATTCATCCTCCACC
CCCCATGAACGGATTTTTTCTGGAAGAGCCCAATACTATAATATTCAATG
GTTACCTATTTCTTTCAGTTCTATAGACAGGAGCCAGCCAAAGAGCATGA
AATCATGAATTGTCTTCGGTACGTGAGACCAGGGAAAGGTTACATACCCA
AATTTGAGCTGTTCTCAAAAGTTGATGTCAATGGGGAAGATGCTATTGGC
TTGTACAAATGGCTCAAAGTAAGTGACATGTGTTCAGTTTGAAAAAAAAC
AACATCACTATTATGTATTGACGATAGCTAGGTAAGGAAGATAATCCCTT
ACTCCTACAATAGACACTCTCTAATTCGACCTTCTACTATTCGACACGCT
CCATTATTCGATAATACTGAAAGTCACTGTCAACAAAAACTACTGTAAAC
GACACTCCCTTATTCGATGAAAATCCCTATCCCCCTTGAAAATCGAATTA
GAGAGCGTCAACTGTAAGTAGATTTTACGAAGTACCCAAGAATTTCTTTT
TTGGGTTGGAGCGTGGGGTCGCAACTTCGCTTGAAACGATTTTAAAATGA
AAAAGGAAGTAAATAAAGTAAAGGTGCGATCCTGAGCGTGTTATGTGATC
TCTTTCTCTGCTGCACTCATCCCTAAAAACGTTGCCAATTGAGAAGTTGT
CCCCTCCCAGCTGACACACAACGTTGTTTCAAAACGTTCATCTAACGTTA
TATTGACGTTGTTAACGTTAGATAAACGTCANTAAAAACGTTGCCCATTG
AGAAGTTGTCCCCTCCCAGCTGACACACAACGTTGTTTCAAAACGTTCAT
CTAACGTTATATTGACGTTGTTAACGTTAGATAAACGTCAAAACAACGTT
GTGTGCCAGCTGGGCTATCACTTGGCTTCTGAGCTAACCCGATACTACCT
TTAATCCAAAGCCTCTACCTATATATTTAGAGATAGAGTTGTTGTGTAGT
ATAATTTTCAAACTCTGGTCACACTTTAATATTATCTCCTTTTTAGTACA
TGTGTCCACGACCAACACAGAAGATCTCTTTCACCAAATATGTTCCTTGG
ACCCCAATCATGACCACCGATATTGAATGGAATTTTGAAGAATTCCTATT
GGACCATAAGGGTCGACCAATCAGAAGATTCTCAGCTGATACGTTACCGT
TGGAATATGAAAATGATATCAAAAGGGCGATTGACGCATGTAAAAAGGAT
TCGATGTAAGATAACTTAACTGGTAATAGAAAGGAGACTTTTCAAGGGGT
TATTGTGGGTTGTTTTAAAGAACCAATGCATAGTAGATCAGTTTTATGCT
TTGAAAACGAAATCAAAATGGACAGCTTCGAGCTTGTCTGATATTATGTA
AGATGAAACAAGAACAAGTTTAGAATCAAAACAATCTAGTGTAAAATCTA
TTTTTATAAAGTTGACGTGTTATAATACTCGCGAAAGGAATGCGAAGCAG
TATTTTGATCAAAAACACAACACCTAGAGAAGCAGTTTTAGTGTTGTTTT
AAAAATGACGCAATCTTATTGGTTTACGCTTTAGCTAATTGACAAGATTA
GCCATTGTCACACTGAAAGAGTGGAAAAGGGGGAGCGAAAAGTCTTGCAT
TTCTATTCAAAGAGCTTATAGTGATCGATTTTTTTTTTCATAAACAGAGT
GTCATATGAACTCTTTTGACTTAAGATTCTAAATTCACAAATGCTCGATG
AATTTAGCGAATCCACAAAGCAGAACCAAGCAAGTAGAATAATTTTAAAT
CTTAATTCTATTAGGGAAAATTAAAAGTTAAACCTTCGTTTTAAATTTCT
CATTTTTATTTTCTAAGGAAAATTTTAATGAACAGAATACGGTAGACTTT
GACTTAGAATTTTAAATCTTGTAATTATGTAACATTTTTTATTTTAGCAA
AAATATTTAGTTTCATAATATGATTGTTATTTTCATGGATAAAACATATG
ACGGTAATAGCTTGACTCGATGAATCATTCGAAGGCTATTATCTGACGAT
CTCGATTAGTTAGAAATTTTTTGTACATTTAATTTTTCTGATGAAAGAGA
TCTTATTTTTTTCAGAATTTTTAACAAGAATATGATGTATACTAATTTAA
GACATAGAAAAAAGAAAATGAATAAACTACAGATAAAATATTTTGTAATT
TCAATTTAATTCATAAGTCCGTCCGTTATCCCTACTCGAATTCTATTCAC
CGAGAATGGTTTCACCCGGTATTTTCAACTCTAGATAGACTTTGA

Coding sequence (CDS) from alignment at sc0000284:190085..193779-

>TCONS_00018063 ID=TCONS_00018063|Name=TCONS_00018063|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000284:190085..193779- (Clytia hemisphaerica)
TACATGTGTCCACGACCAACACAGAAGATCTCTTTCACCAAATATGTTCC
TTGGACCCCAATCATGACCACCGATATTGAATGGAATTTTGAAGAATTCC
TATTGGACCATAAGGGTCGACCAATCAGAAGATTCTCAGCTGATACGTTA
CCGTTGGAATATGAAAATGATATCAAAAGGGCGATTGACGCATGTAAAAA
GGATTCGATGTAATTCTATAGACAGGAGCCAGCCAAAGAGCATGAAATCA
TGAATTGTCTTCGGTACGTGAGACCAGGGAAAGGTTACATACCCAAATTT
GAGCTGTTCTCAAAAGTTGATGTCAATGGGGAAGATGCTATTGGCTTGTA
CAAATGGCTCAAAATGTATGACCAAAATGGTAGGAAGACTAACAAATGTT
CACTTCAAGTTTTGGGATTTCCTTCAAATCAGTACATGTGTCCACGACCA
ACACAGAAGATCTCTTTCACCAAATATGTTCCTTGGACCCCAATCATGAC
CACCGATATTGAATGGAATTTTGAAGAATTCCTATTGGACCATAAGGGTC
GACCAATCAGAAGATTCTCAGCTGATACGTTACCGTTGGAATATGAAAAT
GATATCAAAAGGGCGATTGACGCATGTAAAAAGGATTCGATGTAATTCTA
TAGACAGGAGCCAGCCAAAGAGCATGAAATCATGAATTGTCTTCGGTACG
TGAGACCAGGGAAAGGTTACATACCCAAATTTGAGCTGTTCTCAAAAGTT
GATGTCAATGGGGAAGATGCTATTGGCTTGTACAAATGGCTCAAAATGTA
TGACCAAAATGGTAGGAAGACTAACAAATGTTCACTTCAAGTTTTGGGAT
TTCCTTCAAATCAGTACATGTGTCCACGACCAACACAGAAGATCTCTTTC
ACCAAATATGTTCCTTGGACCCCAATCATGACCACCGATATTGAATGGAA
TTTTGAAGAATTCCTATTGGACCATAAGGGTCGACCAATCAGAAGATTCT
CAGCTGATACGTTACCGTTGGAATATGAAAATGATATCAAAAGGGCGATT
GACGCATGTAAAAAGGATTCGATGTAATTCTATAGACAGGAGCCAGCCAA
AGAGCATGAAATCATGAATTGTCTTCGGTACGTGAGACCAGGGAAAGGTT
ACATACCCAAATTTGAGCTGTTCTCAAAAGTTGATGTCAATGGGGAAGAT
GCTATTGGCTTGTACAAATGGCTCAAAATGTATGACCAAAATGGTAGGAA
GACTAACAAATGTTCACTTCAAGTTTTGGGATTTCCTTCAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010125XLOC_010125Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018063-proteinTCONS_00018063-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018063-exon-sc0000284-1575043694:193193..193779TCONS_00018063-exon-sc0000284-1575043694:193193..193779Clytia hemisphaericaexon
TCONS_00018063-exon-sc0000284-1575043694:192112..192261TCONS_00018063-exon-sc0000284-1575043694:192112..192261Clytia hemisphaericaexon
TCONS_00018063-exon-sc0000284-1575043694:190085..191333TCONS_00018063-exon-sc0000284-1575043694:190085..191333Clytia hemisphaericaexon
TCONS_00018063-exon-sc0000284-1510915933:193193..193779TCONS_00018063-exon-sc0000284-1510915933:193193..193779Clytia hemisphaericaexon
TCONS_00018063-exon-sc0000284-1510915933:192112..192261TCONS_00018063-exon-sc0000284-1510915933:192112..192261Clytia hemisphaericaexon
TCONS_00018063-exon-sc0000284-1510915933:190085..191333TCONS_00018063-exon-sc0000284-1510915933:190085..191333Clytia hemisphaericaexon
TCONS_00018063-exon-sc0000284-1491911889:193193..193779TCONS_00018063-exon-sc0000284-1491911889:193193..193779Clytia hemisphaericaexon
TCONS_00018063-exon-sc0000284-1491911889:192112..192261TCONS_00018063-exon-sc0000284-1491911889:192112..192261Clytia hemisphaericaexon
TCONS_00018063-exon-sc0000284-1491911889:190085..191333TCONS_00018063-exon-sc0000284-1491911889:190085..191333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:190085..193779 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0598949	0.038938	0.0452107	0.0221158	12.9504	11.659	50.6175	51.8812	27.255	20.756	13.4915	18.1232	4.03653	2.9923	0.136041	0.0973287	9.5621	11.3217	12.4156	19.9211	53.6631	49.4029	27.401	35.0052	44.2214	38.7779	118.045	94.3395	2.9029	2.30286
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000889Glutathione_peroxidase
IPR029760GPX_CS
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0004602glutathione peroxidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0004602 glutathione peroxidase activity
Blast
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BLAST of TCONS_00018063 vs. Swiss-Prot (Human)
Match: GPX5 (Epididymal secretory glutathione peroxidase OS=Homo sapiens GN=GPX5 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.967e-37
Identity = 80/196 (40.82%), Postives = 108/196 (55.10%), Query Frame = 3 
Query:  327 CYTDHTNSNYFHTYKHKDLNGNE-VHFQKYKGKVSLVVNVASF*ALTNATYTELNVLVSKYGPNSMYDQNGRKTNKCSLQVLGFPSNQFYRQEPAKEHEIMNCLRYVRPGKGYIPKFELFSKVDVNGEDAIGLYKWLKYMCPRPTQKISFTKYVPWTPIMTTDIEWNFEEFLLDHKGRPIRRFSADTLPLEYENDI 911
            C+ D   + Y   Y+   LN NE V F++Y GK  L VNVA++  LT A Y ELN L  +  P               L VLGFP NQF +QEP    EI+  L+YVRPG G++P F+LF K DVNGE    ++ +LK+ CP P++ +   K + W P+   DI WNFE+FL+   G P+ R+S        + DI
Sbjct:   32 CHKDEKGTIY--DYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYG-------------LVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 211
The following BLAST results are available for this feature:
BLAST of TCONS_00018063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPX55.967e-3740.82Epididymal secretory glutathione peroxidase OS=Hom... [more]
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