TCONS_00018060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018060
Unique NameTCONS_00018060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018060 ID=TCONS_00018060|Name=TCONS_00018060|organism=Clytia hemisphaerica|type=transcript|length=589bp
CGCCCATCATTTTTAAATACTTCAAGTTTGGGAAATGAACCTTGCGAACG
GGACCAAACTACTTTTCCACCAGAGTTAAATTTGACTTCGGTTTTCTTAT
CTCCCGGCGTTTCTTTTATAGTGAGGTGTCCAACACCTTCTTGTTCATAG
GATTGCGAATGGTGTCCGAATACATTTGTCCGAGAAGCGATCAAGTGTCC
GTTAGAATTATACTCGTGTTCTATCCAATGGTTAGTATCTTGCTTAACAG
TGCGTACAAGCGTGAAGTCACGTGACGAATAGTAATAATGCTGTTCTTTG
TTTAAGTCTAAAACAACTTTTGTCAAGAAGTTGGCTTCGTCGTAAACATA
CTCTACGGTATGAATTAAAAcatctttttcaaattgttgAATTCTGTCCA
CGAGTTGATTATCTCCATAATGTATACTGAAACGATTTCCAAAATTATCA
CTGATAGCTGATTTAGCTTCATTGATATGAATGATAGACGAGTTATCACT
ACTTTGTACTTTCACTAGTTCGTTGCTTGATTTATGGAAATGGTAAATGT
ATGGAGGAGCTTGATCAgtcttttctaaaattaaacCAT
Run BLAST on NCBI

transcript from alignment at sc0000284:19158..21007-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018060 ID=TCONS_00018060|Name=TCONS_00018060|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000284:19158..21007- (Clytia hemisphaerica)
CGCCCATCATTTTTAAATACTTCAAGTTTGGGAAATGAACCTTGCGAACG
GGACCAAACTACTTTTCCACCAGAGTTAAATTTGACTTCGGTTTTCTTAT
CTCCCGGCGTTTCTTTTATAGTGAGGTGTCCAACACCTTCTTGTTCATAG
GATTGCGAATGGTGTCCGAATACATTTGTCCGAGAAGCGATCAAGTGTCC
GTTAGAATTATACTCGTGTTCTATCCAATGGTTAGTATCTTGCTTAACAG
TGCGTACAAGCGTGAAGTCACGTGACGAATAGTAATAATGCTGTTCTTTG
TTTAAGTCTAAAACAACTTTTGTCAAGAAGTTGGCTTCGTCGTAAACATA
ACTGAAAGAAAATCAAGAAAAAAATGACTCTACAATTCATGATATGCACC
ACTGCAATTTCTTCTGACATTACGTCACGGAACCAATAGCTCATTGGTTG
GAAGTGACGTAAAAGCAGTCAATACGTCACTTTCAACCAATCAGCTATTG
GGTGGAACGGAAGACATTGCAATGGTGCATATCATGAATAAAGAAGATTT
AGTTTTCTTAAAAGTCTAATTTTTACATAAGTGTACATATCAGGACAGTG
CCTGTCTATTGTTATATTGTGCTGATATAAGCAAAATAATGTTTTCCTCT
TTCTTGCCAATCTTGCTCCATATCCGTGTCAATCCAACATCAAAAAGCTG
GTAAATTAAAATTGATGAGTAAACAAACGATATCACTCTTACTTAAAAAA
TCCGGCAAAGTCGTTCGGGGTTGTGAAGGTTTCTTTTACTAATTACTAAT
TTCCCGATCAGCTTTTTGAAGTAAACTAGTAATTAGCAGTAATTTTTAAA
CTCTGACTCGTTGTCACTGATTATTTGGACACCTGTGATTCGTTGGAAGA
AACCTTTATCAAATTGGTAGTTGGTCCCAACACTAGACGAAATCATGGAT
TTCCAAACTTGGAAATATAGTAGTAATAAAAAATTTCCTAATGAGTTTAG
AAATATACAGATTTTACTTTTGTAAATATGATATTAACATCAAAATGTAA
GGAAATATGATATTTCCCTAAAGTGGTAAATATGGGGAAGTCAAATGTGT
CAAATATCTTATTTCTACTATATTTCCCATTTTGGAAATCCATGATTTCG
CTAAGTGCAGCTGTTCGGTGACAGGATGGCAAAATGTCGATCAGGGGGAG
GGGGTACTTAGGCAAAATGGGTGCCAGGTATGTGCGAGCCATAAGGGTCC
CCTTTTCACACCCTTAAAGTCTCTCAAAGGGGTACAAGAACCATTAAAAG
AAAATTGAGTATCTGTAAGGGTCCAAAAATCAAAAAATTTAAAATTTCCA
CTTTCAAAGGGTCGTGATTTTCCAAAATTTGGACAAAAATCGAGTGAAAA
TCGACAAGAATTTTTAGAAAAGTCTCTCTCTAAGGGTTTTTGATTCTTGC
CTCGGACATACCCTTCACCTCGCAAACCTAGTACCCCCCCGGATCAACCT
AGCTAAATCTCCCTATGTGCTTGTCCTATTCTCGAAGAACTGTTTGCGTA
CAGGCTATGATGAAGCAGAAAACAAATCTAAAACCACTTTAAATACGAAA
GATTTAACATACTCTACGGTATGAATTAAAACATCTTTTTCAAATTGTTG
AATTCTGTCCACGAGTTGATTATCTCCATAATGTATACTGAAACGATTTC
CAAAATTATCACTGATAGCTGATTTAGCTTCATTGATATGAATGATAGAC
GAGTTATCACTACTTTGTACTTTCACTAGTTCGTTGCTTGATTTATGGAA
ATGGTAAATGTATGGAGGAGCTTGATCAGTCTTTTCTAAAATTAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010123XLOC_010123Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018060-exon-sc0000284-1575043694:20661..21007TCONS_00018060-exon-sc0000284-1575043694:20661..21007Clytia hemisphaericaexon
TCONS_00018060-exon-sc0000284-1575043694:19158..19399TCONS_00018060-exon-sc0000284-1575043694:19158..19399Clytia hemisphaericaexon
TCONS_00018060-exon-sc0000284-1510915933:20661..21007TCONS_00018060-exon-sc0000284-1510915933:20661..21007Clytia hemisphaericaexon
TCONS_00018060-exon-sc0000284-1510915933:19158..19399TCONS_00018060-exon-sc0000284-1510915933:19158..19399Clytia hemisphaericaexon
TCONS_00018060-exon-sc0000284-1491911889:20661..21007TCONS_00018060-exon-sc0000284-1491911889:20661..21007Clytia hemisphaericaexon
TCONS_00018060-exon-sc0000284-1491911889:19158..19399TCONS_00018060-exon-sc0000284-1491911889:19158..19399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:19158..21007 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.663409	0.00354569	0.18935	0.634468	3.47325	2.33338	3.60736	4.86487	0.788327	0.675496	0.496694	1.65736	0	1.03907	0.33784	0.463352	0.994558	1.05079	0	0	2.39329	1.76427	0	0.714306	5.66929	2.9493	0	0	0.508968	0.372489
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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