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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018048 ID=TCONS_00018048|Name=TCONS_00018048|organism=Clytia hemisphaerica|type=transcript|length=1076bpRun BLAST on NCBI transcript from alignment at sc0000284:154842..182387+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018048 ID=TCONS_00018048|Name=TCONS_00018048|organism=Clytia hemisphaerica|type=transcript|length=27546bp|location=Sequence derived from alignment at sc0000284:154842..182387+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018048 vs. Swiss-Prot (Human)
Match: ATP23 (Mitochondrial inner membrane protease ATP23 homolog OS=Homo sapiens GN=ATP23 PE=1 SV=3) HSP 1 Score: 114.005 bits (284), Expect = 4.529e-29 Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 142 KNICCEPCEPRLTAAFDTDRKEVIVCENQMRNQKFMDNVLTHELIHAYDVCRAKFDQ-KNLEHLACSSIRVANLTGDCFFWKENFLRLRFGWKAQHQECVRELAVKNMMCSKDISEQKARGVVDK 513
++ CE C ++ FD ++++C+N + NQ M+ V+THELIHA+D CRA D N+ HLACS +R ANL+GDC E F RL FG K HQ CVR+ A +++ ++IS++ A+ VD+
Sbjct: 84 RHFSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIF-RLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDE 207 The following BLAST results are available for this feature:
BLAST of TCONS_00018048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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