TCONS_00018042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018042
Unique NameTCONS_00018042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018042 ID=TCONS_00018042|Name=TCONS_00018042|organism=Clytia hemisphaerica|type=transcript|length=1706bp
tagcaTCCCCTTTGATATGTTTTCATATAGGGGCTGCTGATTGTGTACGA
AATTCTCGCCCAAGAGTTACCCccgtgtttttaattttttttaattttta
ttgtaaTAGACGATATTGGcttaacatgaaaactcagatttgatcccgag
aattccccacaattcTTTGCGCGGAAAATATTTCACCgcgaacttttttc
cgcgcaaagcattgtggggaattctcggggatcaaatctgagttttcatg
ttaagccgatatcgtctattcgtACATACGCAGATTTTTATTCTTCATAT
TTTAGAATTCTTGGCACAAGCATTGTATTTGAGTGTAGACCCTTACATGA
GACCATACTCACGCAACATGAAAGAAGGAACAAAAATGATTGGCGGAGGT
GTTGGCAGAGTTGTCGATagtaaaaatgaagaatttccAAAAGGTTGTTT
AGTGGTCGGCCCCTTTGGATGGTCCACACACGTGGTCTCGAATCAAGGTA
TTAtcaaaatgtttcgaaaaataCCAGAAATTGAAAACCCATCATTAGCA
CTCGGAGGTCTTGGTCTGACAGGAATGACGGCTTATTTTGGCTTATTGAA
TATCTGTGAACCAAAAGCTGGAGAAACTGTATTCGTTAATGCTGCTGCCG
GCGCCACAGGGTCGGTCGTCGGACAGATCGCCAAAATCAAGGGATGCAGG
GTCGTTGGATGTGCCGGTTCAGATGCTAAAGTAgaatatttaaaagaaat
tggtTTCGATGGTGCTTTTAATTACAAGACAGCCGATTTAGAAAAGGAGC
TCAAGAATCTTTGTCCGAAAGGAATCGATTGCTTCTTCGACAACgtGGGT
GGCAAAATGTATGATACAGTATTGAAACAAATGAATAGACATGGTCGTAT
TTCTTTATGTGGTTGTATTTCACTTTACAATGAAAATACCGATGGCTTTG
GAAACACCAAGGGTGAAAATACAGTTCACCCCAACAGTTTAAgtCCTTAC
GTTCATTTCGAGGCTAttccaaaagaattgaaaatccAAGGTTTCATCGT
CACATCATATTATGATAAAGGTTTTATGGACGCTTTCACGGAGCTCTCTC
AAtggataaaagagggCAAAATTGACGCTCGTGAACACGTGGTGGAAGGC
TTTGAATCAATGCCCAAAGCCTTTATCTCATTATTTCACGGTGAAAACAT
TGGTAAAATAGTTGTCAAGGTGTAAACAAGACTTTAAGAACTCGTAGGgt
atgaaatatctttcaatcgGTTACTTTGAGATTACTTGGGCTTTTCACTA
GGTCACAAGCCTTATAACCTAACTAATAGGCGAACAGCTCTCAGGTTTTA
TGATTTTCTATGTCACTTTGGTGCTACTGCAAAGAATACATTCGTTTTGG
TTTTCTATTGATTATGGGATAAACATCATAAtctgacatttttttccttt
tcgttttttggaattattttattttcgtcCATCTAGTTTGTGGTTAAATC
CTTATAATTATAAATATCTCTTTTTTTATCAtatgttttttcgattttat
ttttctaatccATCTACTTACTATATACATACGTACATACGTGAATAATT
TGTTAagattttacttttgaaatatgaagGACAACTGTAAATATATCTCA
AACTTTAGGTATTACtgttaaaaaaagataattgaACTGTTGATTTTAAA
TTCACC
Run BLAST on NCBI

protein sequence of TCONS_00018042-protein

>TCONS_00018042-protein ID=TCONS_00018042-protein|Name=TCONS_00018042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MLSRYRLFVHTQIFILHILEFLAQALYLSVDPYMRPYSRNMKEGTKMIGG
GVGRVVDSKNEEFPKGCLVVGPFGWSTHVVSNQGIIKMFRKIPEIENPSL
ALGGLGLTGMTAYFGLLNICEPKAGETVFVNAAAGATGSVVGQIAKIKGC
RVVGCAGSDAKVEYLKEIGFDGAFNYKTADLEKELKNLCPKGIDCFFDNV
GGKMYDTVLKQMNRHGRISLCGCISLYNENTDGFGNTKGENTVHPNSLSP
YVHFEAIPKELKIQGFIVTSYYDKGFMDAFTELSQWIKEGKIDAREHVVE
GFESMPKAFISLFHGENIGKIVVKV
Run BLAST on NCBI

transcript from alignment at sc0000284:116431..126869+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018042 ID=TCONS_00018042|Name=TCONS_00018042|organism=Clytia hemisphaerica|type=transcript|length=10439bp|location=Sequence derived from alignment at sc0000284:116431..126869+ (Clytia hemisphaerica)
tagcaTCCCCTTTGATATGTTTTCATATAGGGGCTGCTGATTGTGTACGA
AATTCTCGCCCAAGAGTTACCCccgtgtttttaattttttttaattttta
ttgtaaTAGACGATATTGGcttaacatgaaaactcagatttgatcccgag
aattccccacaattcTTTGCGCGGAAAATATTTCACCgcgaacttttttc
cgcgcaaagcattgtggggaattctcggggatcaaatctgagttttcatg
ttaagccgatatcgtctattcgtACATACGCAGATTTTTATTCTTCATAT
TTTAGAATTCTTGGCACAAGCATTGTATTTGAGTGTAGACCCTTACATGA
GGTAAAAACTCTTAATGTTAACGATTtatttgtctgtacacaaacccaat
atctacggctaatttcaaaattcattgccgtagagaactacgctacgata
atcgtgagatacactctggtacagagtaacgATTTATCAGACAATATCAA
AACAATATCTGGTACAAACTTACGAAAGGTAGAAGACTACAAATATCTTG
GTTCATATATCTCTTCTTctgaaaaagactttaaaattcgCAAAGGTTTA
GCTGGGAGTGCATGCAATAAGCTGCAAAGTATTTGGTCATCTTCCTTCAT
CGACTCTAGtctcaaagttaaaattttcaagtcaacTATTGAGCCAATTC
TTATGTATGGCTCAGAAACTTGGTCCCTtaccaaaaagtttgaaaaagca
aCTAGACGGTACCTATACCAGACttctgagaagggttaaaaatcTCTCTT
GGCGTGACCATCCAACAAAACGCACCATATATGGTTCCTTGAAACCAATC
TCTCTCCTCCTTAAAGCCAAGCGCGTTCAATTTGCTGGTCATTGTTTCGT
GCCTCTCCTGAGGTTATTTCNATCTCCTCCTTAAAGCCAAGCGCGTTCAA
TTTGCTGGTCATTGTTTTCGTGCCTCTCATGAGGTTATTTCCTTTGGAAA
CCTAAACGTGTGGCTCAGAGATCGAGAAAATTCACCTTTCCAGATGTGGT
AAACAGGGATACAGGCCTTGATCTTAGCGACCTGTGCACTGCTATGCGCA
ACCGCTACTCCTGGCGCTAGCGAGTGGAATCCAttgtctcgactgcggtc
gagcaatgatgatgatgatgaaagaATTAACATTATacgtaaaaaaaata
tttctcgaaTCTTTATTTCTTCcaattttttccttttcctaAGAACgtat
aaaaaaaattggaaagtaAATAAAATTGTGACAAGATTAATTGCTCTACG
ATATacctttttgcctttttttacGCCGCTCCTTATTGGTAAATCTTTTT
GTCTCTGACGTAAGAAAGGCTAGCGTTAAATTGGGACCGgcgtaaaaagg
cccaataagGTAGTATTATGTATCACCTGTGAGTGCACGAATCGCATAAC
GTAGGGTTATACttattatttttgtcaaataattACACCCTATCTCGAAT
CAAACCCCTTGTGGTATCAGTGTTTACAGGTGTGTACCCTATTTTATCAA
GGGTTATTATTTAGTTTTCCTCCTCATTATCCCAGAATGTTGTTTTTCCA
TTTTAGACCATACTCACGCAACATGAAAGAAGGAACAAAAATGATTGGCG
GAGGTGTTGGCAGGTAATCTTCACTTCCTATTTACTGCAATTATTTTCCC
TTAAATGCCAAAAACTTTATAATCTGATAAGGGCTCACGGGTTAATACAG
GTTAAGCATTAACCGTTTAATGCtgaagtgttttttataagaacaaacta
tcaaaacaataagaacaagttaagaatgttttaaggctttgtggactctc
tAAACGATGCCCCCAAGCGGTTtttgtgatggcgtgattggccTTTTTCA
AGTTCGTAATTTCGTAATGTAAGATTTAGTGCGTGATTGAAGGAACGATT
GTGATCAACATGATTGTGATAAAGGAAGTTTTActcgtgataacgtgatt
tggaaatttctttGGCGTGATTGTGTGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNaatttccaaccttggagaatgtcccacattttcaggttggattttcca
ttggattttatcttttttccaactaagaaaacttgaaatttccaaccttg
gaaaccgaaaattttttcctgtgtgaTTTGAAAGCTGATTTGGGGGCTTC
CTAAACCGCAAAATTCCTTAGGAAATGGTACAAAAATGgtgaaatgaaaa
acattttaagagaatttttaggcttagtattcaaaaagctaagaacatcc
aaaggcttaaaaaaacgtgtaggttaCCTTCTTTGGGTTACATTTACTCA
CCGATCCCTCATCAAGATTTAAAGATAATCTTTACATATGAAGTTGTTTG
CTGATTTTGCAAAAGCGAAGGAAAAAGATTTACATTGATCCATCAAAAAC
GTGGACCANCTGATTTTGCAAAAGCTAAGGAAAAAGATTTACATTGATCC
ATCAAAAACGTGGACCATTCTTTTCAAttcttattcaacatttttaatgT
CAAAGTTGCCCCTGAAAAATATCCTATAGAATCCAATTAGGAACATCGAG
TTTAAATCCCGAAAGGCtacagtagaatctctaacctttcgcAGGCTANC
ATTGAGgttaaagcccgaaaggctacagtagaatctctaacctttcgcag
gctagaaaaagtgaagccacttatttcccatccaaaacgtgcatagaacg
cgccgtaatcatggcGACggatctagcggttcctttgttttggagaacta
cattttttaaattctagcgatggattttagtttcaatccggcgtttgtgt
aaaaactaatgggaaataagtggtttcatttccaatccaggagtctcgcc
tctagcccttcgggtttgaaactcaatgattaGGAATGACttagcgaccg
tagtacagtggtagagcatccggctacggttcgcaaggttgtgggttcaa
cccccagccgggtcataccaaagattcccaaaatggtactNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNgagaaagagtggcgccctcacctaccttcgggta
gatagctatcgaaagaggagccttcgggtcgcctccgactgcggtcgcag
acttacttaacCTGTAAATACTATTTGGCTAGCTCGCCAAAATTCTATTA
AATACATTTATTTCGAAGGTAAGTGCAACTTATATTTCATTGTCCATTaa
atcttaaaatgttttaattgcCTCTTTAGAGTTGTCGATagtaaaaatga
agaatttccAAAAGGTTGTTTAGTGGTCGGCCCCTTTGGATGGTCCACAC
ACGTGGTCTCGAATCAAGGTATTAtcaaaatgtttcgaaaaataCCAGAA
ATTGAAAACCCATCATTAGCACTCGGAGGTCTTGGTCTGACAGGGTATGT
ATGATATATATTTTCTATCATAATAAATTTTTCAGTAAAaggtttttgtt
cttttgaaaataatttcttattCTTATTACGATACGTTCTTTCAAATGTA
TACTAGATTAGACTATGTTATGTCACCCCCCCCCCAAcggacgacatgga
atttccgtaacaaatttacaaaatacctatcaaaaccgTGGAATTCTGGT
ACTGTAACCTAAAAtaatcatggaattccaatacttaaatgcaaaattaa
gtaagattcatggaattccgatactttctctttaaagtttgctgaaattt
attttagaaattgatgtcgtccattagggggtaatgttttttttctggaa
tggcccaatgacAATTGTACACGATCAAAAGAAAGAACTTACTTATATGC
GATCGGTATGCGATCTGTCCAATTTTAGTTATCCGTGAAGTAAACTATTT
TGCTAATATTTGTTACTACCAATGCCTTCTTACATACAGAATTTAAACCA
TTCATTtgaattcttatttcttcaaaTTTATTTCATATATTTCAACACAA
CTTTTATCGAATTTGTTTCAGAATGACGGCTTATTTTGGCTTATTGAATA
TCTGTGAACCAAAAGCTGGAGAAACTGTATTCGTTAATGCTGCTGCCGGC
GCCACAGGGTCGGTCGTCGGACAGATCGCCAAAATCAAGGGATGCAGGGT
CGTTGGATGTGCCGGTTCAGATGCTAAAGTAgaatatttaaaagaaattg
gtTTCGATGGTGCTTTTAATTACAAGACAGCCGATTTAGAAAAGGAGCTC
AAGAATCTTTGTCCGAAAGGAATCGATTGCTTCTTCGACAACGTAAGTTA
ATTCCGGCCGTCTGTTGCGCGAGTTAGTGCTCGTAACGTTCattcatttc
tttcattttcctgtCTTGAAATGCCATATGTTGGGCGAAAAAAACAAACT
GAGGACCTTAATAATGATAATTTACATATAAAAAAGAAGCGTTTTTGGAT
GTACAAAGAATTTGGAAAAtactgttaatatttttttttggaaattaggG
GGGAANAGTTGGGCGAAACAAACAAACCGAGGACCTTAATAATGATAATT
TACATAataaacaagcgatacttttatggacctacctagttatcaaacta
atcagtgaacattgaaacaatgaaacacataagacataactggtcaaaat
aaaaaaaaataaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNataactggtcaaaatacaaaaaaataaagaaaatgaa
agcatatctattgagagaaactatcaacactattgaaaaagatttttgaa
aaagaaataaaaaagctaccaagcgcttttctttataaaaacaactatca
gaaaaatgcacagcttaataaataaggtttccagtaAAGTCAAACCgtcg
cactctaccgtgacattttcttctgttagaaaaataataataaaaaaaca
atttggctaataatattgatctatgctcataaataatgattcttatagat
aaagattcgtttttcagccaaaaaaataataagtgtttacagaaaactca
aatcattaccctccaccgtgacattttcNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCTTTAACTATaattgtaccctactttcatgctaaaaatcag
aaaaaattaatgatccaatttttcacaaagtccaaaaaacccgtttttaa
gccgttttttggccctaatttacccaaaaaaattttttttcgaaaatcgg
gctccgtcacattcgagggtttaaggtcatgcacctttgtgccaaaaatc
agaaaaaactaatgagccaatctcgagaaaagctggtaactaacacacta
actaactaactaacgaacgaacatgggttaatttataggacctccacccc
accggggtaggtccaaaaagaagcATTTTTGGATGTACAAAGAATTTGGA
AAAtactgttaatattttttttggaaattaggGGAAACCTTAGATTATGT
TATGGCgttttatgaaaatattcaaaaagcaATGTCTTTCGTCACAACAG
TTTTTATGACTTCGTCACAATAATTTTCCATCTCGACATTAAGACTTTAA
GACTGTTGACTTTTATATCATAATTTGGTATATGTATCGTAATGGTATAT
ATCCCCTATATAAATTAGACTGGGTTTCTTGAGATACTATAGGCTCTTTC
GAAAAACGTGTAAACAGTTCGATGCTATACTCTCCTGGAGTGGCAAACAA
AAGGTCAAATATATCTTGCTCTGGTTAGACGTAATTTTGCGGTGTTTTTC
NCAAACAAAAGGTCAAATATAGCTTGCTCTGGTTAGACGTAATTTTGCGG
TGTTTTTCCGTCCAGCAGGAAGAGGAAACTTATTGTCTAGAGAAGGTTTA
AGATCTTAACGAGgagatcttttaaaaaaaaggtgaccccctggattttt
ttccaatttttcaggccccccatggatttttttctcccatttctttggac
caccctggatttttgaccatgttatactgaccaccctgataattttcaac
ccgattttactgaccaaaaattttatcattcaaaaaaccagACCATCCTG
GAttctttattttccagaccgccctggacgtcacacctcctcaacatagg
gggtacagaccaatgaagtataagcccgaagggctagaagtcaatctcct
tggtaggagttgaagccaacaaatcctaccaaaattgCGCGgtcttgagc
ggctcgcctggtttttacacaaatggcaaattgaaactaaaatttaccgc
taaatttcgaaaaaaatatcaattgtaaacaaaggaattgctagattcaa
tctgtcgtcaaaaatgcggcgcattttttaagacttcactttttcttgcc
tgagaaaggttagagattgaactctagcccttcgggctttaaactcaatg
gtacagactatttctggaatagcccattatgttcgtcacccagtgtgaac
cttttttttttgtatggaAATCTCAATTCGAGCATGAAACACACGAAACT
CAATcttcatcttttgttttttaggtGGGTGGCAAAATGTATGATACAGT
ATTGAAACAAATGAATAGACATGGTCGTATTTCTTTATGTGGTTGTATTT
CACTTTACAATGAAAATACCGATGGCTTTGGAAACACCAAGGGTGAAAAT
ACAGTTCACCCCAACAGTTTAAGTAAGTTTCCTTTGCATTGTTGAGATAC
ATCtacatctttttttataagcataacgcttataatcATATGGGCCATAT
GATGgatcagatttgcagaattcctaagcataacataagcataaatgtca
gcctgaaatatttttcaagttgtcattttctatctgtttaaaaaggtttg
gaagAGGTCAAAATAAGacattccacggttAGCTAGATTCCACGTTCCac
aaatctgaacaaatttttgcaacaagaaatgttttttcaCTAAAagcttg
gctcggggtgaatcataagcatataataagcataagctaCTGTATGCCTG
GATACTTTGAGAACTTTGAGCATACACAAGCCTGACCAAGGgacatacac
ttgcttataaaaaaaacattgtaccaatgctttcgcagttgttGCTGGAG
ATATGACCTTTCAAATAATCCCGAAAATGGAAGGGctgaaaatgttttga
tttttaattttgtcgGGGATTCTGAAGCAACTAGGCTATTTTTCTCTTGG
AGGAAGAATGAGTGTTTTTGACTTTCTAATTTCTCAAATATAACTGCTTC
NGGGctgaaaatgttttgatttttaattttgtcgGGGATTCTGAAGCAAC
TAGGTTATTTTTCTCTTGGAGGGAGAATGAGTGTTTTTGACTTTCTAATT
TCTCAAATATAActgcttctttttttttaattcaggtCCTTACGTTCATT
TCGAGGCTAttccaaaagaattgaaaatccAAGGTTTCATCGTCACATCA
TATTATGATAAAGGTTTTATGGACGCTTTCACGGAGCTCTCTCAAtggat
aaaagaggtaagaatATTTCCTACGTGTTAAATGTAGATATTCTTTTTGC
TCTTAAGAAATTTTTCCGCTAATTAAGGTCTATGTCTCCCGTGGGATGGG
GGGGGGGTACCTAGGAAAAAGGAGGGTAGagatgtgccgcccttaagggt
cccttttaTGGGACATTCAAAATCTcactaagggtcgtaaaaatcaaaTT
GTCTAATTCCAGTCCCCCCTTAAGGGTTGTAAACACAGCTCAAATTCCAT
ATCATGACCCTCAAAAGCTTCAATTTATATGAaatagtcccaataagggt
cacaCAATTCACGTAAATTCGGGTTTTCTCCNTATGAaatagtcccaata
agggtcacaCAATTCATATAAATTTGGGTTTTCTCTCCATTTAAGTCCCT
TTATGGGTCCGTTTCGATACTTATAAGGGCCTGGCCACTAAAAGTCGGGC
GGCACTTACCCGTCATCCCGCAAACGCTCAGTTTTTAGAGCATTTACGAA
AATGGTATTGTCTTAAAACAATGGGTAATCTACTATTTAAATAATGTGTT
GGTTTATACAGTTGTGGAGATCACCCCTTTACTTCTCAAAGGTGATAGTC
ATCTTGCTGCCTCTTatgtttttttagcttttgagcCTCAAATAAAGAAG
GACTCCACCCATCCTGACTTAGGCTACTCGTGACTGTACGAGAAGTTCAT
TTCTCTCTTGATTTACAAATTATGacctttactttctttttctttagggC
AAAATTGACGCTCGTGAACACGTGGTGGAAGGCTTTGAATCAATGCCCAA
AGCCTTTATCTCATTATTTCACGGTGAAAACATTGGTAAAATAGTTGTCA
AGGTGTAAACAAGACTTTAAGAACTCGTAGGgtatgaaatatctttcaat
cgGTTACTTTGAGATTACTTGGGCTTTTCACTAGGTCACAAGCCTTATAA
CCTAACTAATAGGCGAACAGCTCTCAGGTTTTATGATTTTCTATGTCACT
TTGGTGCTACTGCAAAGAATACATTCGTTTTGGTTTTCTATTGATTATGG
GATAAACATCATAAtctgacatttttttccttttcgttttttggaattat
tttattttcgtcCATCTAGTTTGTGGTTAAATCCTTATAATTATAAATAT
CTCTTTTTTTATCAtatgttttttcgattttatttttctaatccATCTAC
TTACTATATACATACGTACATACGTGAATAATTTGTTAagattttacttt
tgaaatatgaagGACAACTGTAAATATATCTCAAACTTTAGGTATTACtg
ttaaaaaaagataattgaACTGTTGATTTTAAATTCACC

Coding sequence (CDS) from alignment at sc0000284:116431..126869+

>TCONS_00018042 ID=TCONS_00018042|Name=TCONS_00018042|organism=Clytia hemisphaerica|type=CDS|length=6846bp|location=Sequence derived from alignment at sc0000284:116431..126869+ (Clytia hemisphaerica)
atgttaagccgatatcgtctattcgtACATACGCAGATTTTTATTCTTCA
TATTTTAGAATTCTTGGCACAAGCATTGTATTTGAGTGTAGACCCTTACA
TGAGACCATACTCACGCAACATGAAAGAAGGAACAAAAATGATTGGCGGA
GGTGTTGGCAGAGTTGTCGATagtaaaaatgaagaatttccAAAAGGTTG
TTTAGTGGTCGGCCCCTTTGGATGGTCCACACACGTGGTCTCGAATCAAG
GTATTAtcaaaatgtttcgaaaaataCCAGAAATTGAAAACCCATCATTA
GCACTCGGAGGTCTTGGTCTGACAGGAATGACGGCTTATTTTGGCTTATT
GAATATCTGTGAACCAAAAGCTGGAGAAACTGTATTCGTTAATGCTGCTG
CCGGCGCCACAGGGTCGGTCGTCGGACAGATCGCCAAAATCAAGGGATGC
AGGGTCGTTGGATGTGCCGGTTCAGATGCTAAAGTAgaatatttaaaaga
aattggtTTCGATGGTGCTTTTAATTACAAGACAGCCGATTTAGAAAAGG
AGCTCAAGAATCTTTGTCCGAAAGGAATCGATTGCTTCTTCGACAACgtG
GGTGGCAAAATGTATGATACAGTATTGAAACAAATGAATAGACATGGTCG
TATTTCTTTATGTGGTTGTATTTCACTTTACAATGAAAATACCGATGGCT
TTGGAAACACCAAGGGTGAAAATACAGTTCACCCCAACAGTTTAAgtCCT
TACGTTCATTTCGAGGCTAttccaaaagaattgaaaatccAAGGTTTCAT
CGTCACATCATATTATGATAAAGGTTTTATGGACGCTTTCACGGAGCTCT
CTCAAtggataaaagagggCAAAATTGACGCTCGTGAACACGTGGTGGAA
GGCTTTGAATCAATGCCCAAAGCCTTTATCTCATTATTTCACGGTGAAAA
CATTGGTAAAATAGTTGTCAAGGTGTAAatgttaagccgatatcgtctat
tcgtACATACGCAGATTTTTATTCTTCATATTTTAGAATTCTTGGCACAA
GCATTGTATTTGAGTGTAGACCCTTACATGAGACCATACTCACGCAACAT
GAAAGAAGGAACAAAAATGATTGGCGGAGGTGTTGGCAGAGTTGTCGATa
gtaaaaatgaagaatttccAAAAGGTTGTTTAGTGGTCGGCCCCTTTGGA
TGGTCCACACACGTGGTCTCGAATCAAGGTATTAtcaaaatgtttcgaaa
aataCCAGAAATTGAAAACCCATCATTAGCACTCGGAGGTCTTGGTCTGA
CAGGAATGACGGCTTATTTTGGCTTATTGAATATCTGTGAACCAAAAGCT
GGAGAAACTGTATTCGTTAATGCTGCTGCCGGCGCCACAGGGTCGGTCGT
CGGACAGATCGCCAAAATCAAGGGATGCAGGGTCGTTGGATGTGCCGGTT
CAGATGCTAAAGTAgaatatttaaaagaaattggtTTCGATGGTGCTTTT
AATTACAAGACAGCCGATTTAGAAAAGGAGCTCAAGAATCTTTGTCCGAA
AGGAATCGATTGCTTCTTCGACAACgtGGGTGGCAAAATGTATGATACAG
TATTGAAACAAATGAATAGACATGGTCGTATTTCTTTATGTGGTTGTATT
TCACTTTACAATGAAAATACCGATGGCTTTGGAAACACCAAGGGTGAAAA
TACAGTTCACCCCAACAGTTTAAgtCCTTACGTTCATTTCGAGGCTAttc
caaaagaattgaaaatccAAGGTTTCATCGTCACATCATATTATGATAAA
GGTTTTATGGACGCTTTCACGGAGCTCTCTCAAtggataaaagagggCAA
AATTGACGCTCGTGAACACGTGGTGGAAGGCTTTGAATCAATGCCCAAAG
CCTTTATCTCATTATTTCACGGTGAAAACATTGGTAAAATAGTTGTCAAG
GTGTAAatgttaagccgatatcgtctattcgtACATACGCAGATTTTTAT
TCTTCATATTTTAGAATTCTTGGCACAAGCATTGTATTTGAGTGTAGACC
CTTACATGAGACCATACTCACGCAACATGAAAGAAGGAACAAAAATGATT
GGCGGAGGTGTTGGCAGAGTTGTCGATagtaaaaatgaagaatttccAAA
AGGTTGTTTAGTGGTCGGCCCCTTTGGATGGTCCACACACGTGGTCTCGA
ATCAAGGTATTAtcaaaatgtttcgaaaaataCCAGAAATTGAAAACCCA
TCATTAGCACTCGGAGGTCTTGGTCTGACAGGAATGACGGCTTATTTTGG
CTTATTGAATATCTGTGAACCAAAAGCTGGAGAAACTGTATTCGTTAATG
CTGCTGCCGGCGCCACAGGGTCGGTCGTCGGACAGATCGCCAAAATCAAG
GGATGCAGGGTCGTTGGATGTGCCGGTTCAGATGCTAAAGTAgaatattt
aaaagaaattggtTTCGATGGTGCTTTTAATTACAAGACAGCCGATTTAG
AAAAGGAGCTCAAGAATCTTTGTCCGAAAGGAATCGATTGCTTCTTCGAC
AACgtGGGTGGCAAAATGTATGATACAGTATTGAAACAAATGAATAGACA
TGGTCGTATTTCTTTATGTGGTTGTATTTCACTTTACAATGAAAATACCG
ATGGCTTTGGAAACACCAAGGGTGAAAATACAGTTCACCCCAACAGTTTA
AgtCCTTACGTTCATTTCGAGGCTAttccaaaagaattgaaaatccAAGG
TTTCATCGTCACATCATATTATGATAAAGGTTTTATGGACGCTTTCACGG
AGCTCTCTCAAtggataaaagagggCAAAATTGACGCTCGTGAACACGTG
GTGGAAGGCTTTGAATCAATGCCCAAAGCCTTTATCTCATTATTTCACGG
TGAAAACATTGGTAAAATAGTTGTCAAGGTGTAAatgttaagccgatatc
gtctattcgtACATACGCAGATTTTTATTCTTCATATTTTAGAATTCTTG
GCACAAGCATTGTATTTGAGTGTAGACCCTTACATGAGACCATACTCACG
CAACATGAAAGAAGGAACAAAAATGATTGGCGGAGGTGTTGGCAGAGTTG
TCGATagtaaaaatgaagaatttccAAAAGGTTGTTTAGTGGTCGGCCCC
TTTGGATGGTCCACACACGTGGTCTCGAATCAAGGTATTAtcaaaatgtt
tcgaaaaataCCAGAAATTGAAAACCCATCATTAGCACTCGGAGGTCTTG
GTCTGACAGGAATGACGGCTTATTTTGGCTTATTGAATATCTGTGAACCA
AAAGCTGGAGAAACTGTATTCGTTAATGCTGCTGCCGGCGCCACAGGGTC
GGTCGTCGGACAGATCGCCAAAATCAAGGGATGCAGGGTCGTTGGATGTG
CCGGTTCAGATGCTAAAGTAgaatatttaaaagaaattggtTTCGATGGT
GCTTTTAATTACAAGACAGCCGATTTAGAAAAGGAGCTCAAGAATCTTTG
TCCGAAAGGAATCGATTGCTTCTTCGACAACgtGGGTGGCAAAATGTATG
ATACAGTATTGAAACAAATGAATAGACATGGTCGTATTTCTTTATGTGGT
TGTATTTCACTTTACAATGAAAATACCGATGGCTTTGGAAACACCAAGGG
TGAAAATACAGTTCACCCCAACAGTTTAAgtCCTTACGTTCATTTCGAGG
CTAttccaaaagaattgaaaatccAAGGTTTCATCGTCACATCATATTAT
GATAAAGGTTTTATGGACGCTTTCACGGAGCTCTCTCAAtggataaaaga
gggCAAAATTGACGCTCGTGAACACGTGGTGGAAGGCTTTGAATCAATGC
CCAAAGCCTTTATCTCATTATTTCACGGTGAAAACATTGGTAAAATAGTT
GTCAAGGTGTAAatgttaagccgatatcgtctattcgtACATACGCAGAT
TTTTATTCTTCATATTTTAGAATTCTTGGCACAAGCATTGTATTTGAGTG
TAGACCCTTACATGAGACCATACTCACGCAACATGAAAGAAGGAACAAAA
ATGATTGGCGGAGGTGTTGGCAGAGTTGTCGATagtaaaaatgaagaatt
tccAAAAGGTTGTTTAGTGGTCGGCCCCTTTGGATGGTCCACACACGTGG
TCTCGAATCAAGGTATTAtcaaaatgtttcgaaaaataCCAGAAATTGAA
AACCCATCATTAGCACTCGGAGGTCTTGGTCTGACAGGAATGACGGCTTA
TTTTGGCTTATTGAATATCTGTGAACCAAAAGCTGGAGAAACTGTATTCG
TTAATGCTGCTGCCGGCGCCACAGGGTCGGTCGTCGGACAGATCGCCAAA
ATCAAGGGATGCAGGGTCGTTGGATGTGCCGGTTCAGATGCTAAAGTAga
atatttaaaagaaattggtTTCGATGGTGCTTTTAATTACAAGACAGCCG
ATTTAGAAAAGGAGCTCAAGAATCTTTGTCCGAAAGGAATCGATTGCTTC
TTCGACAACgtGGGTGGCAAAATGTATGATACAGTATTGAAACAAATGAA
TAGACATGGTCGTATTTCTTTATGTGGTTGTATTTCACTTTACAATGAAA
ATACCGATGGCTTTGGAAACACCAAGGGTGAAAATACAGTTCACCCCAAC
AGTTTAAgtCCTTACGTTCATTTCGAGGCTAttccaaaagaattgaaaat
ccAAGGTTTCATCGTCACATCATATTATGATAAAGGTTTTATGGACGCTT
TCACGGAGCTCTCTCAAtggataaaagagggCAAAATTGACGCTCGTGAA
CACGTGGTGGAAGGCTTTGAATCAATGCCCAAAGCCTTTATCTCATTATT
TCACGGTGAAAACATTGGTAAAATAGTTGTCAAGGTGTAAatgttaagcc
gatatcgtctattcgtACATACGCAGATTTTTATTCTTCATATTTTAGAA
TTCTTGGCACAAGCATTGTATTTGAGTGTAGACCCTTACATGAGACCATA
CTCACGCAACATGAAAGAAGGAACAAAAATGATTGGCGGAGGTGTTGGCA
GAGTTGTCGATagtaaaaatgaagaatttccAAAAGGTTGTTTAGTGGTC
GGCCCCTTTGGATGGTCCACACACGTGGTCTCGAATCAAGGTATTAtcaa
aatgtttcgaaaaataCCAGAAATTGAAAACCCATCATTAGCACTCGGAG
GTCTTGGTCTGACAGGAATGACGGCTTATTTTGGCTTATTGAATATCTGT
GAACCAAAAGCTGGAGAAACTGTATTCGTTAATGCTGCTGCCGGCGCCAC
AGGGTCGGTCGTCGGACAGATCGCCAAAATCAAGGGATGCAGGGTCGTTG
GATGTGCCGGTTCAGATGCTAAAGTAgaatatttaaaagaaattggtTTC
GATGGTGCTTTTAATTACAAGACAGCCGATTTAGAAAAGGAGCTCAAGAA
TCTTTGTCCGAAAGGAATCGATTGCTTCTTCGACAACgtGGGTGGCAAAA
TGTATGATACAGTATTGAAACAAATGAATAGACATGGTCGTATTTCTTTA
TGTGGTTGTATTTCACTTTACAATGAAAATACCGATGGCTTTGGAAACAC
CAAGGGTGAAAATACAGTTCACCCCAACAGTTTAAgtCCTTACGTTCATT
TCGAGGCTAttccaaaagaattgaaaatccAAGGTTTCATCGTCACATCA
TATTATGATAAAGGTTTTATGGACGCTTTCACGGAGCTCTCTCAAtggat
aaaagagggCAAAATTGACGCTCGTGAACACGTGGTGGAAGGCTTTGAAT
CAATGCCCAAAGCCTTTATCTCATTATTTCACGGTGAAAACATTGGTAAA
ATAGTTGTCAAGGTGTAAatgttaagccgatatcgtctattcgtACATAC
GCAGATTTTTATTCTTCATATTTTAGAATTCTTGGCACAAGCATTGTATT
TGAGTGTAGACCCTTACATGAGACCATACTCACGCAACATGAAAGAAGGA
ACAAAAATGATTGGCGGAGGTGTTGGCAGAGTTGTCGATagtaaaaatga
agaatttccAAAAGGTTGTTTAGTGGTCGGCCCCTTTGGATGGTCCACAC
ACGTGGTCTCGAATCAAGGTATTAtcaaaatgtttcgaaaaataCCAGAA
ATTGAAAACCCATCATTAGCACTCGGAGGTCTTGGTCTGACAGGAATGAC
GGCTTATTTTGGCTTATTGAATATCTGTGAACCAAAAGCTGGAGAAACTG
TATTCGTTAATGCTGCTGCCGGCGCCACAGGGTCGGTCGTCGGACAGATC
GCCAAAATCAAGGGATGCAGGGTCGTTGGATGTGCCGGTTCAGATGCTAA
AGTAgaatatttaaaagaaattggtTTCGATGGTGCTTTTAATTACAAGA
CAGCCGATTTAGAAAAGGAGCTCAAGAATCTTTGTCCGAAAGGAATCGAT
TGCTTCTTCGACAACgtGGGTGGCAAAATGTATGATACAGTATTGAAACA
AATGAATAGACATGGTCGTATTTCTTTATGTGGTTGTATTTCACTTTACA
ATGAAAATACCGATGGCTTTGGAAACACCAAGGGTGAAAATACAGTTCAC
CCCAACAGTTTAAgtCCTTACGTTCATTTCGAGGCTAttccaaaagaatt
gaaaatccAAGGTTTCATCGTCACATCATATTATGATAAAGGTTTTATGG
ACGCTTTCACGGAGCTCTCTCAAtggataaaagagggCAAAATTGACGCT
CGTGAACACGTGGTGGAAGGCTTTGAATCAATGCCCAAAGCCTTTATCTC
ATTATTTCACGGTGAAAACATTGGTAAAATAGTTGTCAAGGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010116XLOC_010116Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018042-proteinTCONS_00018042-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018042-exon-sc0000284-1491911889:116431..116781TCONS_00018042-exon-sc0000284-1491911889:116431..116781Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1510915933:116431..116781TCONS_00018042-exon-sc0000284-1510915933:116431..116781Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1575043694:116431..116781TCONS_00018042-exon-sc0000284-1575043694:116431..116781Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1491911889:118037..118093TCONS_00018042-exon-sc0000284-1491911889:118037..118093Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1510915933:118037..118093TCONS_00018042-exon-sc0000284-1510915933:118037..118093Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1575043694:118037..118093TCONS_00018042-exon-sc0000284-1575043694:118037..118093Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1491911889:120910..121074TCONS_00018042-exon-sc0000284-1491911889:120910..121074Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1510915933:120910..121074TCONS_00018042-exon-sc0000284-1510915933:120910..121074Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1575043694:120910..121074TCONS_00018042-exon-sc0000284-1575043694:120910..121074Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1491911889:121652..121922TCONS_00018042-exon-sc0000284-1491911889:121652..121922Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1510915933:121652..121922TCONS_00018042-exon-sc0000284-1510915933:121652..121922Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1575043694:121652..121922TCONS_00018042-exon-sc0000284-1575043694:121652..121922Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1491911889:124555..124702TCONS_00018042-exon-sc0000284-1491911889:124555..124702Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1510915933:124555..124702TCONS_00018042-exon-sc0000284-1510915933:124555..124702Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1575043694:124555..124702TCONS_00018042-exon-sc0000284-1575043694:124555..124702Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1491911889:125416..125537TCONS_00018042-exon-sc0000284-1491911889:125416..125537Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1510915933:125416..125537TCONS_00018042-exon-sc0000284-1510915933:125416..125537Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1575043694:125416..125537TCONS_00018042-exon-sc0000284-1575043694:125416..125537Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1491911889:126278..126869TCONS_00018042-exon-sc0000284-1491911889:126278..126869Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1510915933:126278..126869TCONS_00018042-exon-sc0000284-1510915933:126278..126869Clytia hemisphaericaexon
TCONS_00018042-exon-sc0000284-1575043694:126278..126869TCONS_00018042-exon-sc0000284-1575043694:126278..126869Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000284supercontigsc0000284:116431..126869 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.4619	29.9782	133.266	161.374	17.6736	15.13	25.0548	27.337	40.839	36.9988	34.593	27.3265	55.269	46.9753	35.2539	33.5201	44.8583	41.1464	57.5059	56.096	49.5608	47.7468	28.0155	28.5105	28.7259	39.0019	92.853	71.5796	24.2308	22.5708
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020843PKS_ER
IPR013149ADH_C
IPR011032GroES-like
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00018042 vs. Swiss-Prot (Human)
Match: PTGR1 (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.726e-84
Identity = 145/307 (47.23%), Postives = 202/307 (65.80%), Query Frame = 2 
Query:  305 EFLAQALYLSVDPYMRPYSRNMKEGTKMIGGGVGRVVDSKNEEFPKGCLVVGPFGWSTHVVSN-QGIIKMFRKIPEIENPSXXXXXXXXXXXXXYFGLLNICEPKAGETVFVNAAAGATGSVVGQIAKIKGCRVVGCAGSDAKVEYLKEIGFDGAFNYKTAD-LEKELKNLCPKGIDCFFDNVGGKMYDTVLKQMNRHGRISLCGCISLYNENTDGFGNTKGENTVHPNSLSPYVHFEAIPKELKIQGFIVTSYYDKGFMDAFTELSQWIKEGKIDAREHVVEGFESMPKAFISLFHGENIGKIVVK 1219
            E L +AL+L+VDPYMR  ++ +KEG  M+G  V +VV+SKN   PKG +V+   GW+TH +S+ + + K+  + P+    SLALG +G+ G+TAYFGLL IC  K GETV VNAAAGA GSVVGQIAK+KGC+VVG  GSD KV YL+++GFD  FNYKT + LE+ LK   P G DC+FDNVGG+  +TV+ QM + GRI++CG IS YN           E  ++              +EL+++ F+V  +       A  +L +W+ EGKI  +E+++EGFE+MP AF+ +  G+N+GK +VK
Sbjct:   36 EVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIY--------------QELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVK 328
The following BLAST results are available for this feature:
BLAST of TCONS_00018042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTGR11.726e-8447.23Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
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