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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018022 ID=TCONS_00018022|Name=TCONS_00018022|organism=Clytia hemisphaerica|type=transcript|length=1085bp
TAGTGCTACACGACCCAAGGATTGGAGTTGACTCGTGTCACGGTAGTCGA
TTTCTATCTTGCACAAATCATCGATTTATTTGTCAAACCCGATAATCCGA
TTGTGGATTACAATACAAAGTTTAGCGGTGTAACGAAAGAGAATTTGAAG
AACGTTGATTACTCTTTGAAAGACATTCAAGAAATCTTCATGAATTTGTT
CGATAAAGATACCATACTGATGGGACACAGTCTGGAAAGTGATCTCAAAG
CTCTCAAGataaTTCACCGGCGGGTAATCGACACAGCTCTTGTTTTCCCT
CATCGTTTGGGATTACCGTTCAAAAGAGCTTTGAAAACATTAATGGCTGA
ACTCCTTCAAAAAATCATCCAAGATGGAGAGGGTGGTCACGACTCATGCG
AAGACGCCAGATCGTGCATGGAACTGATGAAATACAAATTCAACGAAGAC
GCGAAAGCCGCCAATCGTGGCTCTCACAAACATATCTCTTCCTCGTCttt
ttacaccaaagctccatTGATGAAATTCTGAGGTGTTTTACATTATGATA
TAGAAAGTATATTGTTTGGCGAGGTTTGTATACGGTGTTACGTTCAGTTT
TGTGATACAGTTAGTATGGGTATCgtcacagatttataaagctcaAAGAA
CTGTAGATGTCTTGCTTTGGgtgaaaagtgtgccgtagcTAGGTAGGAAA
TCCAACCTAGGTCATGTGATAttaaaatagaatttcagtgcttgaccaat
cagaagctttgtgggttttcgaaaacaatagcagaaatattttttgcgat
gaTTCACTTTCTTCTGACTGGAAGAGTTTAAAGCATGACATTTAGCCCTT
CAAGCTTTATAAATCTTTGGTATTGTGGGATATTAGGGTTGGAGGAATTT
CAGTTACAGTATGTGCTGACTGGACCTCAAAAAACTGTCCCTCAGAGAAA
CTAAtttcaaatcatcaaaaaaccGACGCTTACCATTCCcacacatacac
gttttttttttattagaacctagtttataagaacatataggctgaaattc
gtcgaaaaattaagaacatcttaagaacatgcgcA Run BLAST on NCBI protein sequence of TCONS_00018022-protein >TCONS_00018022-protein ID=TCONS_00018022-protein|Name=TCONS_00018022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MNLFDKDTILMGHSLESDLKALKIIHRRVIDTALVFPHRLGLPFKRALKT
LMAELLQKIIQDGEGGHDSCEDARSCMELMKYKFNEDAKAANRGSHKHIS
SSSFYTKAPLMKF Run BLAST on NCBI transcript from alignment at sc0000282:363925..368933- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018022 ID=TCONS_00018022|Name=TCONS_00018022|organism=Clytia hemisphaerica|type=transcript|length=5009bp|location=Sequence derived from alignment at sc0000282:363925..368933- (Clytia hemisphaerica)
TAGTGCTACACGACCCAAGGATTGGAGTTGACTCGTGTCACGGTAGTCGA
TTTCTATCTTGCACAAATCATCGATTTATTTGTCAAACCCGATAATCCGA
TTGTGGATTACAATACAAAGTAAGTAAACCGGTGAATGCCGCGTTTTCAG
TAAGCCACCATTATAATGTGTACTCATGTAATAGAATTTTTAAAAATTGG
ACTCTGGTCGGTTCAATACTGAGCCGGTCGGATCATGGTGTATTTGATGC
TTTGCAGCTGAGGAGAATAGAAAGGGGAGAAGAAGAGGCGTCCTACCTCC
CTTCAGTGACACATTTATTATAAATTTCGGTAAAGTTCAAAGTTGCATCA
GTACGACTCGACCCGTAAAGTGGGAAGTCTAATTCGGGTGCTGGCTTAAC
AACCAAATTAATACCCGGTGGATGTGTGAGACCGGACTACGAAAGCGACG
AGCTTAGAAACCAAGGGTGAAGCATTATGTAATGATGCCAAGATATTTGA
ACGGCAGTGAAATAAAGTATAACTCCCCTCTAATAGTGAAGACTTGGCGA
AAATCGAAGACGGAAGAAACAACGAAGAAACAGACCACCCCTTGTTTGCG
TCAATGCCGTTTATCTGGTACCAGATGTGGAAATATGCTACGACACGCTT
TGCTCTGAAGGTCGGGCATATTTTAACATCTGGAAGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCAAAGGGCCACTACTAA
ATCTCTCCGATGGTATATTGGTCCGCTCCTTTAGAGCTTTAGCGTGGGCG
GCCGCCAATACGCCATCGGAATATCAGATAACAATGCCGTAGACGGTTCG
ATGATTGGTCAACTCGTCGGCACTTTTCTTTAATCGAATTAGTTACAATC
TTGTTAATTTTAATTTAAAAAAAGCTCGAAATTTATAGGTTTGGCCTTTC
CAGTCTGCCCAGCAAGTAATTTGTCAAGTTTCAGAAGTAAGCACCATTCT
CTGATGTCCATTTTTAGGTTTAGCGGTGTAACGAAAGAGAATTTGAAGAA
CGTTGATTACTCTTTGAAAGACATTCAAGAAATCTTCATGAATTTGTTCG
ATAAAGATACCATACTGATGGGACACAGTCTGGAAAGTGATCTCAAAGCT
CTCAAGGTAACGCGTGGTTTATGCTTTTAATACACCTTTTCGACCGTAGT
CGCGTGGTCAAGCGCGTGCCACTTTATTATTTAATTATCCCCCTAAACTC
GATTCGATTTTTTTACACCTTTTTCTATTGTCTATAGGTGCGCTAAAAAG
ACTGGGTTGGTTTTATGGTGGTAAGACAAAAAAATGCTTGCGCGGCAGAC
CGTAAGCAACTACGGTCGAAAAGGTGTATTAAAAATTAGCCGTTGTATAA
TTGTATTGGATTGGAAATCCTTCACCTGAAATGCTTAGTTCGGCAAATTC
ACAGCATACATGTATGTCATTCGTCTTATCGCAAGACGTAATAAATAAAT
CAAATTGGTTGAGGTATTTACATAGAAGGTTTACTTTCTGAAACCTTTGC
ATTGATGAATTTTCATTTGGCGTATAGTTGAAAACCATTACCAGAAGTCG
TTGTAGAGAGCCATAAATAATGGCTCTAAAGTAGCGCGGCCTATTGATGT
TGAATATATAGAGAAGAGAAGAGAAGCTAACCCTCCGATATCATCGGACC
GGGCCCTATCCCGGGATTGTTTCCTACCCCTAGATAGGGAAATCACAGCG
CTTACCAGACATTGTACTCTGTGCTCGCGACACATCAGAGCCGTGCTGTA
TCGATGATGATACTCCAACAGTACGGGAGAACCTTGCGTTCTCGCAGGTA
CTGAACATATGAGTACCATCACCACACCACATTCAATGTCCAGCATATCT
CACCATGCTCTTGTATTAGAGTGATGGTACCCTATTCCCCTCACATAGTA
TGGGTTGACCCGGGCCAAGGTACATTCACTTGCCAAGTGAATCGCAACAC
CGAGTGGGAATCGAACCCTGACCTCTAGCACGGATCTCAAGAACGATGAC
CACTACACTACTGCGCCTTGAATATATAATTGAATATATAGTTAGTTTAT
TAACAAACCTGCCCACAATTTTCTTTTCAGATAATTCACCGGCGGGTAAT
CGACACAGCTCTTGTTTTCCCTCATCGTTTGGGATTACCGTTCAAAAGAG
CTTTGAAAACATTAATGGCTGAACTCCTTCAAAAAATCATCCAAGATGGA
GGTACTGTAACATAGAAAATGTTTTTAATTTTTCCCTTAAAAACTACGCT
TTCAACCATGTTTCTTCCTTCCAGAAGATGCATAGGCCGTTTCACAGTCG
AAATGGATCATGGGTAATCAAAACTGATTGTGCCTCCATAATGGCTTTCT
GTTGGCTCGATGTCATAGTCTTCAAAAAAATTTCAAAATTTTGGACCANT
TGTGCCTCCATAATGGCTTTCTGTTGGCTCGATGTCATAGTCTTCAAAAA
AAATTCAAAATTTTGGACCAATAGTAAGTCGTCATTAGTGTGTAGTGGTC
CTGATTACCCATTGCGCTTTGCGACTGTGAAATGGCCTATTTTTCACTAT
CGTGTCAAACCAGAACTTCTCACCATACCGAACCCTCTCCAAGGTTACGA
TGGTGTATTTGTTGTTGTCTTGTTCCATGTTACCGGTTATGATGTCAAAA
AAACATCTACAAAAAAGTTGTAGGTAAAATTGGCGATTTTTTCTTACCAT
ACTTGGCTTTCAATTCTATGCGTATTTTTCTCAGAATGAGGTTTTTCGAA
ATCATGTATATATCTATGCTCTGGTATCTTCACTAGATTAAGTAAAACCT
TATACACGCTTTTTTTTTTATAAGAATGGTGTTTTTTCATTTTATCATGG
ATATTCTTAACTTTTTGGCGAAAATCATCCAAAAATATTCTTACGGTATT
CTTAGGTTAAGATCGAAATTGGCAATCTACAGGTTAAAATGCATTAAAAA
TGGCATTCTTAGGCTCAGTTCCTAAATTCCATGATGGTGATATTCTTTTA
CCATATTCTTAATTTTTTGGCCATTTTCATCATGGGCATTCTTATAAAGT
GTATTCTTATAAAAAAAAAAGCGTCTATTTTAACTATCTCTATATCTTGA
CAGAGGGTGGTCACGACTCATGCGAAGACGCCAGATCGTGCATGGAACTG
ATGAAATACAAATTCAACGAAGACGCGAAAGCCGCCAATCGTGGCTCTCA
CAAACATATCTCTTCCTCGTCTTTTTACACCAAAGCTCCATTGATGAAAT
TCTGAGGTGTTTTACATTATGATATAGAAAGTATATTGTTTGGCGAGGTT
TGTATACGGTGTTACGTTCAGTTTTGTGATACAGTTAGTATGGGTATCGT
CACAGATTTATAAAGCTCAAAGAACTGTAGATGTCTTGCTTTGGGTGAAA
AGTGTGCCGTAGCTAGGTAGGAAATCCAACCTAGGTCATGTGATATTAAA
ATAGAATTTCAGTGCTTGACCAATCAGAAGCTTTGTGGGTTTTCGAAAAC
AATAGCAGAAATATTTTTTGCGATGATTCACTTTCTTCTGACTGGAAGAG
TTTAAAGCATGACATTTAGCCCTTCAAGCTTTATAAATCTTTGGTATTGT
GGGATATTAGGGTTGGAGGAATTTCAGTTACAGTATGTGCTGACTGGACC
TCAAAAAACTGTCCCTCAGAGAAACTAATTTCAAATCATCAAAAAACCGA
CGCTTACCATTCCCACACATACACGTTTTTTTTTTATTAGAACCTAGTTT
ATAAGAACATATAGGCTGAAATTCGTCGAAAAATTAAGAACATCTTAAGA
ACATGCGCA Coding sequence (CDS) from alignment at sc0000282:363925..368933- >TCONS_00018022 ID=TCONS_00018022|Name=TCONS_00018022|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0000282:363925..368933- (Clytia hemisphaerica)
AGGGTGGTCACGACTCATGCGAAGACGCCAGATCGTGCATGGAACTGATG
AAATACAAATTCAACGAAGACGCGAAAGCCGCCAATCGTGGCTCTCACAA
ACATATCTCTTCCTCGTCTTTTTACACCAAAGCTCCATTGATGAAATTCT
GAATAATTCACCGGCGGGTAATCGACACAGCTCTTGTTTTCCCTCATCGT
TTGGGATTACCGTTCAAAAGAGCTTTGAAAACATTAATGGCTGAACTCCT
TCAAAAAATCATCCAAGATGGAGATGAATTTGTTCGATAAAGATACCATA
CTGATGGGACACAGTCTGGAAAGTGATCTCAAAGCTCTCAAGAGGGTGGT
CACGACTCATGCGAAGACGCCAGATCGTGCATGGAACTGATGAAATACAA
ATTCAACGAAGACGCGAAAGCCGCCAATCGTGGCTCTCACAAACATATCT
CTTCCTCGTCTTTTTACACCAAAGCTCCATTGATGAAATTCTGAATAATT
CACCGGCGGGTAATCGACACAGCTCTTGTTTTCCCTCATCGTTTGGGATT
ACCGTTCAAAAGAGCTTTGAAAACATTAATGGCTGAACTCCTTCAAAAAA
TCATCCAAGATGGAGATGAATTTGTTCGATAAAGATACCATACTGATGGG
ACACAGTCTGGAAAGTGATCTCAAAGCTCTCAAGAGGGTGGTCACGACTC
ATGCGAAGACGCCAGATCGTGCATGGAACTGATGAAATACAAATTCAACG
AAGACGCGAAAGCCGCCAATCGTGGCTCTCACAAACATATCTCTTCCTCG
TCTTTTTACACCAAAGCTCCATTGATGAAATTCTGAATAATTCACCGGCG
GGTAATCGACACAGCTCTTGTTTTCCCTCATCGTTTGGGATTACCGTTCA
AAAGAGCTTTGAAAACATTAATGGCTGAACTCCTTCAAAAAATCATCCAA
GATGGAGATGAATTTGTTCGATAAAGATACCATACTGATGGGACACAGTC
TGGAAAGTGATCTCAAAGCTCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018022-exon-sc0000282-1575043694:368815..368933 | TCONS_00018022-exon-sc0000282-1575043694:368815..368933 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1575043694:366628..366766 | TCONS_00018022-exon-sc0000282-1575043694:366628..366766 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1575043694:365533..365653 | TCONS_00018022-exon-sc0000282-1575043694:365533..365653 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1575043694:363925..364630 | TCONS_00018022-exon-sc0000282-1575043694:363925..364630 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1510915933:368815..368933 | TCONS_00018022-exon-sc0000282-1510915933:368815..368933 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1510915933:366628..366766 | TCONS_00018022-exon-sc0000282-1510915933:366628..366766 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1510915933:365533..365653 | TCONS_00018022-exon-sc0000282-1510915933:365533..365653 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1510915933:363925..364630 | TCONS_00018022-exon-sc0000282-1510915933:363925..364630 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1491911889:368815..368933 | TCONS_00018022-exon-sc0000282-1491911889:368815..368933 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1491911889:366628..366766 | TCONS_00018022-exon-sc0000282-1491911889:366628..366766 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1491911889:365533..365653 | TCONS_00018022-exon-sc0000282-1491911889:365533..365653 | Clytia hemisphaerica | exon |
| TCONS_00018022-exon-sc0000282-1491911889:363925..364630 | TCONS_00018022-exon-sc0000282-1491911889:363925..364630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000282 | supercontig | sc0000282:363925..368933 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00018022 vs. Swiss-Prot (Human)
Match: GOR (Putative exonuclease GOR OS=Homo sapiens GN=REXO1L1P PE=5 SV=2) HSP 1 Score: 184.496 bits (467), Expect = 6.797e-52 Identity = 86/166 (51.81%), Postives = 118/166 (71.08%), Query Frame = 1
Query: 4 CYTTQGLELTRVTVVDFYLAQIIDLFVKPDNPIVDYNTKFSGVTKENLKNVDYSLKDIQEIFMNLFDKDTILMGHSLESDLKALKIIHRRVIDTALVFPHRLGLPFKRALKTLMAELLQKIIQDGEGGHDSCEDARSCMELMKYKFNEDAKAANRGSHKHISSSSF 501
CYTT GLELTRVTVVD + + D FVKPDN IVDYNT+FSGVT+ ++ +L +Q I ++ F TIL+GHSLESDL ALK+IH V+DTA++FPH LG P+KR+L+ L A+ L +IIQD + GH+S EDA +C++L+ +K + A+ R H+ S ++
Sbjct: 509 CYTTHGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKTSITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIHSTVVDTAVLFPHYLGFPYKRSLRNLAADYLAQIIQDSQDGHNSSEDASACLQLVMWKVRQRAQIQPR--HRSASPAAL 672
The following BLAST results are available for this feature:
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